RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 FCHSD2O94868 740 aa21.74■■□□□ 1.07
LSM1-205ENST00000523511 DDX10Q13206 875 aaKnown RBP21.74■■□□□ 1.07
LSM1-205ENST00000523511 SLC52A2Q9HAB3 445 aa21.74■■□□□ 1.07
LSM1-205ENST00000523511 PAPPAQ13219 1627 aa21.73■■□□□ 1.07
LSM1-205ENST00000523511 RNMTO43148 476 aaKnown RBP21.73■■□□□ 1.07
LSM1-205ENST00000523511 COL23A1Q86Y22 540 aaPredicted RBP21.73■■□□□ 1.07
LSM1-205ENST00000523511 PNNQ9H307 717 aaKnown RBP21.73■■□□□ 1.07
LSM1-205ENST00000523511 LY75O60449 1722 aa21.72■■□□□ 1.07
LSM1-205ENST00000523511 GNAT3A8MTJ3 354 aa21.72■■□□□ 1.07
LSM1-205ENST00000523511 SSFA2P28290 1259 aa21.72■■□□□ 1.07
LSM1-205ENST00000523511 PRKAR2BP31323 418 aa21.71■■□□□ 1.07
LSM1-205ENST00000523511 LGR6Q9HBX8 967 aa21.71■■□□□ 1.07
LSM1-205ENST00000523511 KDM6AO15550 1401 aaPredicted RBP21.71■■□□□ 1.07
LSM1-205ENST00000523511 PTCD1O75127 700 aaKnown RBP21.7■■□□□ 1.06
LSM1-205ENST00000523511 TEFQ10587 303 aa21.7■■□□□ 1.06
LSM1-205ENST00000523511 RC3H1Q5TC82 1133 aaKnown RBP21.7■■□□□ 1.06
LSM1-205ENST00000523511 SGIP1Q9BQI5 828 aa21.7■■□□□ 1.06
LSM1-205ENST00000523511 RTCBQ9Y3I0 505 aaKnown RBP21.7■■□□□ 1.06
LSM1-205ENST00000523511 CASZ1Q86V15 1759 aa21.69■■□□□ 1.06
LSM1-205ENST00000523511 GNPATO15228 680 aa21.69■■□□□ 1.06
LSM1-205ENST00000523511 LINC00116Q8NCU8 138 aa21.69■■□□□ 1.06
LSM1-205ENST00000523511 RTF1Q92541 710 aaKnown RBP21.69■■□□□ 1.06
LSM1-205ENST00000523511 COL3A1P02461 1466 aaPredicted RBP21.69■■□□□ 1.06
LSM1-205ENST00000523511 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.68■■□□□ 1.06
LSM1-205ENST00000523511 PHF14O94880 888 aa21.68■■□□□ 1.06
LSM1-205ENST00000523511 ITPK1Q13572 414 aa21.68■■□□□ 1.06
LSM1-205ENST00000523511 TRAPPC3LQ5T215 181 aa21.68■■□□□ 1.06
LSM1-205ENST00000523511 RSPH6AQ9H0K4 717 aa21.68■■□□□ 1.06
LSM1-205ENST00000523511 TOGARAM1Q9Y4F4 1720 aa21.68■■□□□ 1.06
LSM1-205ENST00000523511 TTC5Q8N0Z6 440 aa21.67■■□□□ 1.06
LSM1-205ENST00000523511 FHDC1Q9C0D6 1143 aaPredicted RBP21.67■■□□□ 1.06
LSM1-205ENST00000523511 ITGB4P16144 1822 aa21.66■■□□□ 1.06
LSM1-205ENST00000523511 MAP3K5Q99683 1374 aa21.66■■□□□ 1.06
LSM1-205ENST00000523511 ADRA2BP18089 450 aa21.66■■□□□ 1.06
LSM1-205ENST00000523511 SYT17Q9BSW7 474 aa21.66■■□□□ 1.06
LSM1-205ENST00000523511 PHACTR3Q96KR7 559 aa21.64■■□□□ 1.05
LSM1-205ENST00000523511 CNTNAP4Q9C0A0 1308 aa21.63■■□□□ 1.05
LSM1-205ENST00000523511 HTATSF1O43719 755 aaKnown RBP21.63■■□□□ 1.05
LSM1-205ENST00000523511 RPS6KA4O75676 772 aa21.63■■□□□ 1.05
LSM1-205ENST00000523511 VSIG10Q8N0Z9 540 aa21.63■■□□□ 1.05
LSM1-205ENST00000523511 KLHL34Q8N239 644 aa21.63■■□□□ 1.05
LSM1-205ENST00000523511 RFC4P35249 363 aa21.62■■□□□ 1.05
LSM1-205ENST00000523511 IL17REQ8NFR9 667 aa21.62■■□□□ 1.05
LSM1-205ENST00000523511 SLC4A9Q96Q91 983 aa21.62■■□□□ 1.05
LSM1-205ENST00000523511 C5P01031 1676 aa21.61■■□□□ 1.05
LSM1-205ENST00000523511 MSL1Q68DK7 614 aa21.61■■□□□ 1.05
LSM1-205ENST00000523511 NLGN1Q8N2Q7 840 aa21.61■■□□□ 1.05
LSM1-205ENST00000523511 TEX13AQ9BXU3 409 aaPredicted RBP21.61■■□□□ 1.05
LSM1-205ENST00000523511 QSER1Q2KHR3 1735 aa21.6■■□□□ 1.05
LSM1-205ENST00000523511 SLC39A6Q13433 755 aa21.6■■□□□ 1.05
LSM1-205ENST00000523511 C4BP0C0L5 1744 aa21.6■■□□□ 1.05
LSM1-205ENST00000523511 MYBBP1AQ9BQG0 1328 aaKnown RBP21.59■■□□□ 1.05
LSM1-205ENST00000523511 STARD3NLO95772 234 aa21.59■■□□□ 1.05
LSM1-205ENST00000523511 MAPK8IP3Q9UPT6 1336 aa21.58■■□□□ 1.05
LSM1-205ENST00000523511 BTBD11A6QL63 1104 aa21.58■■□□□ 1.05
LSM1-205ENST00000523511 CRKLP46109 303 aaKnown RBP21.58■■□□□ 1.05
LSM1-205ENST00000523511 ARHGEF1Q92888 912 aaKnown RBP21.58■■□□□ 1.05
LSM1-205ENST00000523511 ZNF790Q6PG37 636 aa21.57■■□□□ 1.04
LSM1-205ENST00000523511 CD2APQ9Y5K6 639 aa21.56■■□□□ 1.04
LSM1-205ENST00000523511 NPM2Q86SE8 214 aaKnown RBP21.55■■□□□ 1.04
LSM1-205ENST00000523511 DNAJC10Q8IXB1 793 aa21.55■■□□□ 1.04
LSM1-205ENST00000523511 FMNL2Q96PY5 1086 aa21.55■■□□□ 1.04
LSM1-205ENST00000523511 CCDC87Q9NVE4 849 aa21.55■■□□□ 1.04
LSM1-205ENST00000523511 MRC1P22897 1456 aa21.54■■□□□ 1.04
LSM1-205ENST00000523511 GPR162Q16538 588 aa21.54■■□□□ 1.04
LSM1-205ENST00000523511 AMIGO3Q86WK7 504 aa21.54■■□□□ 1.04
LSM1-205ENST00000523511 ZNF831Q5JPB2 1677 aa21.53■■□□□ 1.04
LSM1-205ENST00000523511 CEMIPQ8WUJ3 1361 aa21.53■■□□□ 1.04
LSM1-205ENST00000523511 ZPR1O75312 459 aa21.53■■□□□ 1.04
LSM1-205ENST00000523511 CYP19A1P11511 503 aaPredicted RBP21.53■■□□□ 1.04
LSM1-205ENST00000523511 WDR43Q15061 677 aaKnown RBP eCLIP21.53■■□□□ 1.04
LSM1-205ENST00000523511 SMIM5Q71RC9 77 aa21.53■■□□□ 1.04
LSM1-205ENST00000523511 SCN11AQ9UI33 1791 aa21.52■■□□□ 1.04
LSM1-205ENST00000523511 MCM10Q7L590 875 aa21.52■■□□□ 1.04
LSM1-205ENST00000523511 PNISRQ8TF01 805 aaKnown RBP21.52■■□□□ 1.04
LSM1-205ENST00000523511 TAF1LQ8IZX4 1826 aa21.52■■□□□ 1.04
LSM1-205ENST00000523511 TAF7Q15545 349 aaPredicted RBP21.51■■□□□ 1.03
LSM1-205ENST00000523511 NFE2L2Q16236 605 aa21.51■■□□□ 1.03
LSM1-205ENST00000523511 INTS5Q6P9B9 1019 aaKnown RBP21.51■■□□□ 1.03
LSM1-205ENST00000523511 PLEKHF1Q96S99 279 aa21.51■■□□□ 1.03
LSM1-205ENST00000523511 MMP10P09238 476 aa21.5■■□□□ 1.03
LSM1-205ENST00000523511 ZNF496Q96IT1 587 aaPredicted RBP21.5■■□□□ 1.03
LSM1-205ENST00000523511 PRKRIP1Q9H875 184 aaPredicted RBP21.5■■□□□ 1.03
LSM1-205ENST00000523511 PARP3Q9Y6F1 533 aa21.5■■□□□ 1.03
LSM1-205ENST00000523511 A0A087WZG4 1122 aa21.49■■□□□ 1.03
LSM1-205ENST00000523511 ZNF316A6NFI3 1004 aaPredicted RBP21.49■■□□□ 1.03
LSM1-205ENST00000523511 HEG1Q9ULI3 1381 aa21.48■■□□□ 1.03
LSM1-205ENST00000523511 GYS1P13807 737 aa21.48■■□□□ 1.03
LSM1-205ENST00000523511 LMOD3Q0VAK6 560 aa21.48■■□□□ 1.03
LSM1-205ENST00000523511 PELP1Q8IZL8 1130 aaKnown RBP21.48■■□□□ 1.03
LSM1-205ENST00000523511 GRIN3BO60391 1043 aa21.47■■□□□ 1.03
LSM1-205ENST00000523511 CANXP27824 592 aaKnown RBP21.47■■□□□ 1.03
LSM1-205ENST00000523511 ADAMTS7Q9UKP4 1686 aa21.47■■□□□ 1.03
LSM1-205ENST00000523511 SNRPA1P09661 255 aaKnown RBP21.46■■□□□ 1.03
LSM1-205ENST00000523511 YY1P25490 414 aa21.46■■□□□ 1.03
LSM1-205ENST00000523511 DCTN1Q14203 1278 aa21.46■■□□□ 1.03
LSM1-205ENST00000523511 TUBGCP6Q96RT7 1819 aa21.45■■□□□ 1.03
LSM1-205ENST00000523511 SOS1Q07889 1333 aaPredicted RBP21.45■■□□□ 1.02
LSM1-205ENST00000523511 USP42Q9H9J4 1324 aaKnown RBP21.45■■□□□ 1.02
LSM1-205ENST00000523511 RIPK4P57078 832 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms