RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 ZNF853P0CG23 659 aa17■□□□□ 0.31
CPNE3-205ENST00000522240 GNAI1P63096 354 aa17■□□□□ 0.31
CPNE3-205ENST00000522240 DCTN1Q14203 1278 aa17■□□□□ 0.31
CPNE3-205ENST00000522240 MCM10Q7L590 875 aa17■□□□□ 0.31
CPNE3-205ENST00000522240 THUMPD2Q9BTF0 503 aaKnown RBP17■□□□□ 0.31
CPNE3-205ENST00000522240 EP400Q96L91 3159 aa17■□□□□ 0.31
CPNE3-205ENST00000522240 FANCIQ9NVI1 1328 aa16.99■□□□□ 0.31
CPNE3-205ENST00000522240 CYP27B1O15528 508 aa16.99■□□□□ 0.31
CPNE3-205ENST00000522240 MKRN4PQ13434 485 aaPredicted RBP16.99■□□□□ 0.31
CPNE3-205ENST00000522240 CCDC125Q86Z20 511 aa16.99■□□□□ 0.31
CPNE3-205ENST00000522240 CFAP44Q96MT7 982 aa16.99■□□□□ 0.31
CPNE3-205ENST00000522240 KDM3BQ7LBC6 1761 aa16.99■□□□□ 0.31
CPNE3-205ENST00000522240 RNMTO43148 476 aaKnown RBP16.98■□□□□ 0.31
CPNE3-205ENST00000522240 IL17REQ8NFR9 667 aa16.98■□□□□ 0.31
CPNE3-205ENST00000522240 BABAM1Q9NWV8 329 aa16.98■□□□□ 0.31
CPNE3-205ENST00000522240 CCDC9Q9Y3X0 531 aaKnown RBP16.98■□□□□ 0.31
CPNE3-205ENST00000522240 TOGARAM1Q9Y4F4 1720 aa16.97■□□□□ 0.31
CPNE3-205ENST00000522240 POLA2Q14181 598 aa16.97■□□□□ 0.31
CPNE3-205ENST00000522240 DCAF5Q96JK2 942 aa16.97■□□□□ 0.31
CPNE3-205ENST00000522240 NKX1-1Q15270 411 aaPredicted RBP16.96■□□□□ 0.31
CPNE3-205ENST00000522240 CHL1O00533 1208 aa16.95■□□□□ 0.3
CPNE3-205ENST00000522240 CT47B1P0C2W7 299 aaPredicted RBP16.95■□□□□ 0.3
CPNE3-205ENST00000522240 EXOC5O00471 708 aa16.94■□□□□ 0.3
CPNE3-205ENST00000522240 TEFQ10587 303 aa16.94■□□□□ 0.3
CPNE3-205ENST00000522240 MPRIPQ6WCQ1 1025 aa16.94■□□□□ 0.3
CPNE3-205ENST00000522240 GJD4Q96KN9 370 aaPredicted RBP16.94■□□□□ 0.3
CPNE3-205ENST00000522240 MBIPQ9NS73 344 aa16.94■□□□□ 0.3
CPNE3-205ENST00000522240 FBXO3Q9UK99 471 aa16.94■□□□□ 0.3
CPNE3-205ENST00000522240 PAPPAQ13219 1627 aa16.94■□□□□ 0.3
CPNE3-205ENST00000522240 C1QBPQ07021 282 aaKnown RBP16.93■□□□□ 0.3
CPNE3-205ENST00000522240 TAF7Q15545 349 aaPredicted RBP16.93■□□□□ 0.3
CPNE3-205ENST00000522240 DDB1Q16531 1140 aa16.93■□□□□ 0.3
CPNE3-205ENST00000522240 TSR2Q969E8 191 aaKnown RBP16.93■□□□□ 0.3
CPNE3-205ENST00000522240 LGR6Q9HBX8 967 aa16.93■□□□□ 0.3
CPNE3-205ENST00000522240 DOT1LQ8TEK3 1739 aa16.93■□□□□ 0.3
CPNE3-205ENST00000522240 FAM98CQ17RN3 349 aaKnown RBP16.92■□□□□ 0.3
CPNE3-205ENST00000522240 LAS1LQ9Y4W2 734 aaKnown RBP16.92■□□□□ 0.3
CPNE3-205ENST00000522240 SLC52A2Q9HAB3 445 aa16.91■□□□□ 0.3
CPNE3-205ENST00000522240 TSPYL4Q9UJ04 414 aa16.91■□□□□ 0.3
CPNE3-205ENST00000522240 ERVV-2B6SEH9 535 aa16.9■□□□□ 0.3
CPNE3-205ENST00000522240 DDX54Q8TDD1 881 aaKnown RBP16.9■□□□□ 0.3
CPNE3-205ENST00000522240 RCAN3Q9UKA8 241 aa16.9■□□□□ 0.3
CPNE3-205ENST00000522240 ONECUT3O60422 494 aaPredicted RBP16.89■□□□□ 0.29
CPNE3-205ENST00000522240 EXOSC9Q06265 439 aaKnown RBP16.89■□□□□ 0.29
CPNE3-205ENST00000522240 SOS1Q07889 1333 aaPredicted RBP16.89■□□□□ 0.29
CPNE3-205ENST00000522240 UBR2Q8IWV8 1755 aa16.88■□□□□ 0.29
CPNE3-205ENST00000522240 ZNF428Q96B54 188 aa16.88■□□□□ 0.29
CPNE3-205ENST00000522240 ITGB4P16144 1822 aa16.88■□□□□ 0.29
CPNE3-205ENST00000522240 BCL9O00512 1426 aa16.87■□□□□ 0.29
CPNE3-205ENST00000522240 BTBD11A6QL63 1104 aa16.86■□□□□ 0.29
CPNE3-205ENST00000522240 CABP4P57796 275 aa16.86■□□□□ 0.29
CPNE3-205ENST00000522240 RNF123Q5XPI4 1314 aa16.86■□□□□ 0.29
CPNE3-205ENST00000522240 MARCH10Q8NA82 808 aaPredicted RBP16.85■□□□□ 0.29
CPNE3-205ENST00000522240 TWISTNBQ3B726 338 aaPredicted RBP16.84■□□□□ 0.29
CPNE3-205ENST00000522240 NHSQ6T4R5 1651 aa16.84■□□□□ 0.29
CPNE3-205ENST00000522240 LAMB4A4D0S4 1761 aa16.84■□□□□ 0.29
CPNE3-205ENST00000522240 A0A0G2JS52 829 aa16.83■□□□□ 0.28
CPNE3-205ENST00000522240 HOXB7P09629 217 aa16.83■□□□□ 0.28
CPNE3-205ENST00000522240 MYT1Q01538 1121 aa16.83■□□□□ 0.28
CPNE3-205ENST00000522240 KCPQ6ZWJ8 1503 aa16.83■□□□□ 0.28
CPNE3-205ENST00000522240 NFATC2IPQ8NCF5 419 aa16.83■□□□□ 0.28
CPNE3-205ENST00000522240 MIS18AQ9NYP9 233 aa16.83■□□□□ 0.28
CPNE3-205ENST00000522240 HEG1Q9ULI3 1381 aa16.83■□□□□ 0.28
CPNE3-205ENST00000522240 VAMP4O75379 141 aa16.82■□□□□ 0.28
CPNE3-205ENST00000522240 RARSP54136 660 aaKnown RBP16.82■□□□□ 0.28
CPNE3-205ENST00000522240 EIF4A1P60842 406 aaKnown RBP16.82■□□□□ 0.28
CPNE3-205ENST00000522240 ALDH1L2Q3SY69 923 aa16.82■□□□□ 0.28
CPNE3-205ENST00000522240 ZNF790Q6PG37 636 aa16.82■□□□□ 0.28
CPNE3-205ENST00000522240 C8orf58Q8NAV2 365 aa16.82■□□□□ 0.28
CPNE3-205ENST00000522240 TMOD3Q9NYL9 352 aa16.82■□□□□ 0.28
CPNE3-205ENST00000522240 C5P01031 1676 aa16.81■□□□□ 0.28
CPNE3-205ENST00000522240 SEPT12Q8IYM1 358 aa16.81■□□□□ 0.28
CPNE3-205ENST00000522240 TSPYL6Q8N831 410 aa16.81■□□□□ 0.28
CPNE3-205ENST00000522240 SUPT16HQ9Y5B9 1047 aaKnown RBP16.81■□□□□ 0.28
CPNE3-205ENST00000522240 BRWD3Q6RI45 1802 aa16.81■□□□□ 0.28
CPNE3-205ENST00000522240 CICQ96RK0 1608 aaPredicted RBP16.81■□□□□ 0.28
CPNE3-205ENST00000522240 RRP1P56182 461 aaKnown RBP16.8■□□□□ 0.28
CPNE3-205ENST00000522240 TTC5Q8N0Z6 440 aa16.8■□□□□ 0.28
CPNE3-205ENST00000522240 CHMP4AQ9BY43 222 aa16.8■□□□□ 0.28
CPNE3-205ENST00000522240 BRPF1P55201 1214 aaPredicted RBP16.79■□□□□ 0.28
CPNE3-205ENST00000522240 KRT24Q2M2I5 525 aa16.79■□□□□ 0.28
CPNE3-205ENST00000522240 KIF16BQ96L93 1317 aa16.78■□□□□ 0.28
CPNE3-205ENST00000522240 SBF2Q86WG5 1849 aa16.78■□□□□ 0.28
CPNE3-205ENST00000522240 KCNQ3O43525 872 aa16.78■□□□□ 0.28
CPNE3-205ENST00000522240 PROM2Q8N271 834 aa16.78■□□□□ 0.28
CPNE3-205ENST00000522240 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.78■□□□□ 0.28
CPNE3-205ENST00000522240 CACNA1FO60840 1977 aa16.77■□□□□ 0.28
CPNE3-205ENST00000522240 SLC39A6Q13433 755 aa16.77■□□□□ 0.28
CPNE3-205ENST00000522240 SF3B2Q13435 895 aaKnown RBP16.77■□□□□ 0.28
CPNE3-205ENST00000522240 POTEDQ86YR6 584 aa16.77■□□□□ 0.28
CPNE3-205ENST00000522240 SSH1Q8WYL5 1049 aa16.77■□□□□ 0.28
CPNE3-205ENST00000522240 PIGBQ92521 554 aa16.77■□□□□ 0.28
CPNE3-205ENST00000522240 FMNL2Q96PY5 1086 aa16.77■□□□□ 0.28
CPNE3-205ENST00000522240 SMC4Q9NTJ3 1288 aa16.77■□□□□ 0.28
CPNE3-205ENST00000522240 ZNF831Q5JPB2 1677 aa16.76■□□□□ 0.27
CPNE3-205ENST00000522240 ELL2O00472 640 aaPredicted RBP16.76■□□□□ 0.27
CPNE3-205ENST00000522240 ZBTB12Q9Y330 459 aaPredicted RBP16.76■□□□□ 0.27
CPNE3-205ENST00000522240 GIGYF1O75420 1035 aaPredicted RBP16.75■□□□□ 0.27
CPNE3-205ENST00000522240 BCAR3O75815 825 aa16.75■□□□□ 0.27
CPNE3-205ENST00000522240 NEFLP07196 543 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms