RNA–Protein interactions for RNA: ENST00000519535.1

SCUBE2-205, Transcript of signal peptide, CUB domain and EGF like domain containing 2, human

TSL 3

Gene SCUBE2, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCUBE2-205	ENST00000519535	C5	P01031	1676 aa		18.3	■□□□□ 0.52
SCUBE2-205	ENST00000519535	C4B	P0C0L5	1744 aa		18.29	■□□□□ 0.52
SCUBE2-205	ENST00000519535	HSP90AB1	P08238	724 aa	Known RBP	18.29	■□□□□ 0.52
SCUBE2-205	ENST00000519535	ATP6V1A	P38606	617 aa		18.29	■□□□□ 0.52
SCUBE2-205	ENST00000519535	AKAP4	Q5JQC9	854 aa		18.29	■□□□□ 0.52
SCUBE2-205	ENST00000519535	RSPH6A	Q9H0K4	717 aa		18.29	■□□□□ 0.52
SCUBE2-205	ENST00000519535	RNMT	O43148	476 aa	Known RBP	18.28	■□□□□ 0.52
SCUBE2-205	ENST00000519535	C1orf141	Q5JVX7	400 aa		18.28	■□□□□ 0.52
SCUBE2-205	ENST00000519535	ARX	Q96QS3	562 aa		18.28	■□□□□ 0.52
SCUBE2-205	ENST00000519535	SYT17	Q9BSW7	474 aa		18.28	■□□□□ 0.52
SCUBE2-205	ENST00000519535	QSER1	Q2KHR3	1735 aa		18.27	■□□□□ 0.52
SCUBE2-205	ENST00000519535	PHF14	O94880	888 aa		18.27	■□□□□ 0.52
SCUBE2-205	ENST00000519535	TAF1L	Q8IZX4	1826 aa		18.27	■□□□□ 0.52
SCUBE2-205	ENST00000519535	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	18.26	■□□□□ 0.51
SCUBE2-205	ENST00000519535	PTCD1	O75127	700 aa	Known RBP	18.26	■□□□□ 0.51
SCUBE2-205	ENST00000519535	DDX10	Q13206	875 aa	Known RBP	18.26	■□□□□ 0.51
SCUBE2-205	ENST00000519535	SLC39A6	Q13433	755 aa		18.26	■□□□□ 0.51
SCUBE2-205	ENST00000519535	IL17RE	Q8NFR9	667 aa		18.26	■□□□□ 0.51
SCUBE2-205	ENST00000519535	RBM42	Q9BTD8	480 aa	Known RBP	18.26	■□□□□ 0.51
SCUBE2-205	ENST00000519535	MSH5	O43196	834 aa		18.25	■□□□□ 0.51
SCUBE2-205	ENST00000519535	PRKAR2B	P31323	418 aa		18.25	■□□□□ 0.51
SCUBE2-205	ENST00000519535	SLC16A10	Q8TF71	515 aa		18.25	■□□□□ 0.51
SCUBE2-205	ENST00000519535	AK7	Q96M32	723 aa		18.25	■□□□□ 0.51
SCUBE2-205	ENST00000519535	SLC52A2	Q9HAB3	445 aa		18.25	■□□□□ 0.51
SCUBE2-205	ENST00000519535	MRC1	P22897	1456 aa		18.25	■□□□□ 0.51
SCUBE2-205	ENST00000519535	COL24A1	Q17RW2	1714 aa		18.24	■□□□□ 0.51
SCUBE2-205	ENST00000519535	GNPAT	O15228	680 aa		18.24	■□□□□ 0.51
SCUBE2-205	ENST00000519535	ADAMTS7	Q9UKP4	1686 aa		18.23	■□□□□ 0.51
SCUBE2-205	ENST00000519535	NLGN2	Q8NFZ4	835 aa		18.23	■□□□□ 0.51
SCUBE2-205	ENST00000519535	UBR3	Q6ZT12	1888 aa		18.21	■□□□□ 0.51
SCUBE2-205	ENST00000519535	U2AF1L5	P0DN76	240 aa	Predicted RBP	18.21	■□□□□ 0.51
SCUBE2-205	ENST00000519535	U2AF1	Q01081	240 aa	Known RBP eCLIP	18.21	■□□□□ 0.51
SCUBE2-205	ENST00000519535	KCP	Q6ZWJ8	1503 aa		18.21	■□□□□ 0.51
SCUBE2-205	ENST00000519535	SCN11A	Q9UI33	1791 aa		18.2	■□□□□ 0.5
SCUBE2-205	ENST00000519535	DNAJC10	Q8IXB1	793 aa		18.2	■□□□□ 0.5
SCUBE2-205	ENST00000519535	CFAP53	Q96M91	514 aa		18.2	■□□□□ 0.5
SCUBE2-205	ENST00000519535	MAP3K5	Q99683	1374 aa		18.19	■□□□□ 0.5
SCUBE2-205	ENST00000519535	KCNQ3	O43525	872 aa		18.19	■□□□□ 0.5
SCUBE2-205	ENST00000519535	SSFA2	P28290	1259 aa		18.19	■□□□□ 0.5
SCUBE2-205	ENST00000519535	INTS5	Q6P9B9	1019 aa	Known RBP	18.19	■□□□□ 0.5
SCUBE2-205	ENST00000519535	TJP1	Q07157	1748 aa		18.18	■□□□□ 0.5
SCUBE2-205	ENST00000519535	KLHL34	Q8N239	644 aa		18.18	■□□□□ 0.5
SCUBE2-205	ENST00000519535	CNTNAP4	Q9C0A0	1308 aa		18.18	■□□□□ 0.5
SCUBE2-205	ENST00000519535	POLD1	P28340	1107 aa		18.17	■□□□□ 0.5
SCUBE2-205	ENST00000519535	CRKL	P46109	303 aa	Known RBP	18.17	■□□□□ 0.5
SCUBE2-205	ENST00000519535	DCTN1	Q14203	1278 aa		18.17	■□□□□ 0.5
SCUBE2-205	ENST00000519535	ARHGEF1	Q92888	912 aa	Known RBP	18.17	■□□□□ 0.5
SCUBE2-205	ENST00000519535	CEMIP	Q8WUJ3	1361 aa		18.17	■□□□□ 0.5
SCUBE2-205	ENST00000519535	COL5A3	P25940	1745 aa	Predicted RBP	18.16	■□□□□ 0.5
SCUBE2-205	ENST00000519535	GNAT3	A8MTJ3	354 aa		18.16	■□□□□ 0.5
SCUBE2-205	ENST00000519535	RC3H1	Q5TC82	1133 aa	Known RBP	18.16	■□□□□ 0.5
SCUBE2-205	ENST00000519535	FLAD1	Q8NFF5	587 aa		18.16	■□□□□ 0.5
SCUBE2-205	ENST00000519535	GAS2L2	Q8NHY3	880 aa		18.16	■□□□□ 0.5
SCUBE2-205	ENST00000519535	MYH14	Q7Z406	1995 aa	Known RBP	18.16	■□□□□ 0.5
SCUBE2-205	ENST00000519535	RPS6KA4	O75676	772 aa		18.15	■□□□□ 0.5
SCUBE2-205	ENST00000519535	PLEKHF1	Q96S99	279 aa		18.15	■□□□□ 0.5
SCUBE2-205	ENST00000519535	SRP68	Q9UHB9	627 aa	Known RBP	18.15	■□□□□ 0.5
SCUBE2-205	ENST00000519535	ZNF831	Q5JPB2	1677 aa		18.15	■□□□□ 0.5
SCUBE2-205	ENST00000519535	FCHSD2	O94868	740 aa		18.14	■□□□□ 0.49
SCUBE2-205	ENST00000519535	CYP19A1	P11511	503 aa	Predicted RBP	18.14	■□□□□ 0.49
SCUBE2-205	ENST00000519535	MCM10	Q7L590	875 aa		18.14	■□□□□ 0.49
SCUBE2-205	ENST00000519535	NUDC	Q9Y266	331 aa		18.14	■□□□□ 0.49
SCUBE2-205	ENST00000519535	ZNF496	Q96IT1	587 aa	Predicted RBP	18.13	■□□□□ 0.49
SCUBE2-205	ENST00000519535	RTCB	Q9Y3I0	505 aa	Known RBP	18.13	■□□□□ 0.49
SCUBE2-205	ENST00000519535	GYS1	P13807	737 aa		18.12	■□□□□ 0.49
SCUBE2-205	ENST00000519535	TRAPPC3L	Q5T215	181 aa		18.12	■□□□□ 0.49
SCUBE2-205	ENST00000519535	PRAMEF22	A3QJZ6	481 aa		18.11	■□□□□ 0.49
SCUBE2-205	ENST00000519535	YBX3	P16989	372 aa	Known RBP eCLIP	18.11	■□□□□ 0.49
SCUBE2-205	ENST00000519535	ZBTB1	Q9Y2K1	713 aa		18.11	■□□□□ 0.49
SCUBE2-205	ENST00000519535	CIC	Q96RK0	1608 aa	Predicted RBP	18.1	■□□□□ 0.49
SCUBE2-205	ENST00000519535	SOS1	Q07889	1333 aa	Predicted RBP	18.1	■□□□□ 0.49
SCUBE2-205	ENST00000519535	MMP10	P09238	476 aa		18.1	■□□□□ 0.49
SCUBE2-205	ENST00000519535	FKBP8	Q14318	412 aa		18.1	■□□□□ 0.49
SCUBE2-205	ENST00000519535	RALBP1	Q15311	655 aa		18.09	■□□□□ 0.49
SCUBE2-205	ENST00000519535	ZNF790	Q6PG37	636 aa		18.09	■□□□□ 0.49
SCUBE2-205	ENST00000519535	THUMPD2	Q9BTF0	503 aa	Known RBP	18.09	■□□□□ 0.49
SCUBE2-205	ENST00000519535	CCDC87	Q9NVE4	849 aa		18.09	■□□□□ 0.49
SCUBE2-205	ENST00000519535	MIS18A	Q9NYP9	233 aa		18.09	■□□□□ 0.49
SCUBE2-205	ENST00000519535	WWC3	Q9ULE0	1092 aa		18.09	■□□□□ 0.49
SCUBE2-205	ENST00000519535	TEF	Q10587	303 aa		18.08	■□□□□ 0.48
SCUBE2-205	ENST00000519535	BCL2L12	Q9HB09	334 aa		18.08	■□□□□ 0.48
SCUBE2-205	ENST00000519535	SIPA1L3	O60292	1781 aa	Predicted RBP	18.08	■□□□□ 0.48
SCUBE2-205	ENST00000519535	VIRMA	Q69YN4	1812 aa	Known RBP	18.07	■□□□□ 0.48
SCUBE2-205	ENST00000519535	UBR2	Q8IWV8	1755 aa		18.07	■□□□□ 0.48
SCUBE2-205	ENST00000519535	ADRA2B	P18089	450 aa		18.07	■□□□□ 0.48
SCUBE2-205	ENST00000519535	DDR1	Q08345	913 aa		18.07	■□□□□ 0.48
SCUBE2-205	ENST00000519535	HEG1	Q9ULI3	1381 aa		18.06	■□□□□ 0.48
SCUBE2-205	ENST00000519535	USP42	Q9H9J4	1324 aa	Known RBP	18.06	■□□□□ 0.48
SCUBE2-205	ENST00000519535	C4A	P0C0L4	1744 aa		18.06	■□□□□ 0.48
SCUBE2-205	ENST00000519535	MYBBP1A	Q9BQG0	1328 aa	Known RBP	18.05	■□□□□ 0.48
SCUBE2-205	ENST00000519535	BTBD11	A6QL63	1104 aa		18.05	■□□□□ 0.48
SCUBE2-205	ENST00000519535	RFC4	P35249	363 aa		18.05	■□□□□ 0.48
SCUBE2-205	ENST00000519535	PIP4K2A	P48426	406 aa	Predicted RBP	18.05	■□□□□ 0.48
SCUBE2-205	ENST00000519535	VSIG10	Q8N0Z9	540 aa		18.05	■□□□□ 0.48
SCUBE2-205	ENST00000519535	CD2AP	Q9Y5K6	639 aa		18.05	■□□□□ 0.48
SCUBE2-205	ENST00000519535	A1BG	P04217	495 aa		18.04	■□□□□ 0.48
SCUBE2-205	ENST00000519535	YY1	P25490	414 aa		18.04	■□□□□ 0.48
SCUBE2-205	ENST00000519535	HMGB2	P26583	209 aa	Known RBP	18.04	■□□□□ 0.48
SCUBE2-205	ENST00000519535	CANX	P27824	592 aa	Known RBP	18.04	■□□□□ 0.48
SCUBE2-205	ENST00000519535	PELP1	Q8IZL8	1130 aa	Known RBP	18.04	■□□□□ 0.48

Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms