RNA–Protein interactions for RNA: ENST00000519219.1

TRIM35-202, Transcript of tripartite motif containing 35, humanhuman

TSL 2

Gene TRIM35, Length 423 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35-202ENST00000519219 ATG3Q9NT62 314 aa12.13□□□□□ -0.47
TRIM35-202ENST00000519219 TMOD3Q9NYL9 352 aa12.13□□□□□ -0.47
TRIM35-202ENST00000519219 C4AP0C0L4 1744 aa12.13□□□□□ -0.47
TRIM35-202ENST00000519219 KDRP35968 1356 aa12.13□□□□□ -0.47
TRIM35-202ENST00000519219 CICQ96RK0 1608 aaPredicted RBP12.12□□□□□ -0.47
TRIM35-202ENST00000519219 SSFA2P28290 1259 aa12.12□□□□□ -0.47
TRIM35-202ENST00000519219 TRIM26Q12899 539 aaPredicted RBP12.12□□□□□ -0.47
TRIM35-202ENST00000519219 BRCA1P38398 1863 aaKnown RBP12.12□□□□□ -0.47
TRIM35-202ENST00000519219 ZNF831Q5JPB2 1677 aa12.11□□□□□ -0.47
TRIM35-202ENST00000519219 PXDNLA1KZ92 1463 aa12.11□□□□□ -0.47
TRIM35-202ENST00000519219 ATP6V1AP38606 617 aa12.11□□□□□ -0.47
TRIM35-202ENST00000519219 IFNL2Q8IZJ0 200 aa12.11□□□□□ -0.47
TRIM35-202ENST00000519219 KDM6AO15550 1401 aaPredicted RBP12.11□□□□□ -0.47
TRIM35-202ENST00000519219 MMP10P09238 476 aa12.1□□□□□ -0.47
TRIM35-202ENST00000519219 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.1□□□□□ -0.47
TRIM35-202ENST00000519219 VIRMAQ69YN4 1812 aaKnown RBP12.09□□□□□ -0.47
TRIM35-202ENST00000519219 TJP1Q07157 1748 aa12.09□□□□□ -0.47
TRIM35-202ENST00000519219 GPBP1L1Q9HC44 474 aaPredicted RBP12.09□□□□□ -0.47
TRIM35-202ENST00000519219 AEBP1Q8IUX7 1158 aa12.08□□□□□ -0.48
TRIM35-202ENST00000519219 SCN11AQ9UI33 1791 aa12.07□□□□□ -0.48
TRIM35-202ENST00000519219 C10orf71Q711Q0 1435 aa12.07□□□□□ -0.48
TRIM35-202ENST00000519219 RBM42Q9BTD8 480 aaKnown RBP12.07□□□□□ -0.48
TRIM35-202ENST00000519219 PANK3Q9H999 370 aa12.07□□□□□ -0.48
TRIM35-202ENST00000519219 ADAMTS7Q9UKP4 1686 aa12.06□□□□□ -0.48
TRIM35-202ENST00000519219 A0A0G2JLW4 131 aa12.06□□□□□ -0.48
TRIM35-202ENST00000519219 HSPA5P11021 654 aaKnown RBP12.06□□□□□ -0.48
TRIM35-202ENST00000519219 ZNF530Q6P9A1 599 aaPredicted RBP12.06□□□□□ -0.48
TRIM35-202ENST00000519219 ARHGEF1Q92888 912 aaKnown RBP12.06□□□□□ -0.48
TRIM35-202ENST00000519219 ARFGEF1Q9Y6D6 1849 aa12.05□□□□□ -0.48
TRIM35-202ENST00000519219 KIF3CO14782 793 aa12.05□□□□□ -0.48
TRIM35-202ENST00000519219 GYS1P13807 737 aa12.05□□□□□ -0.48
TRIM35-202ENST00000519219 PCGF6Q9BYE7 350 aa12.05□□□□□ -0.48
TRIM35-202ENST00000519219 ERVV-2B6SEH9 535 aa12.04□□□□□ -0.48
TRIM35-202ENST00000519219 DPEP1P16444 411 aa12.04□□□□□ -0.48
TRIM35-202ENST00000519219 HMGB2P26583 209 aaKnown RBP12.04□□□□□ -0.48
TRIM35-202ENST00000519219 SRP68Q9UHB9 627 aaKnown RBP12.04□□□□□ -0.48
TRIM35-202ENST00000519219 RTCBQ9Y3I0 505 aaKnown RBP12.04□□□□□ -0.48
TRIM35-202ENST00000519219 CNTNAP4Q9C0A0 1308 aa12.04□□□□□ -0.48
TRIM35-202ENST00000519219 PTCD1O75127 700 aaKnown RBP12.03□□□□□ -0.48
TRIM35-202ENST00000519219 HSPA6P17066 643 aa12.03□□□□□ -0.48
TRIM35-202ENST00000519219 TRAPPC3LQ5T215 181 aa12.03□□□□□ -0.48
TRIM35-202ENST00000519219 DCAF5Q96JK2 942 aa12.03□□□□□ -0.48
TRIM35-202ENST00000519219 BCS1LQ9Y276 419 aa12.03□□□□□ -0.48
TRIM35-202ENST00000519219 PLEKHG2Q9H7P9 1386 aa12.03□□□□□ -0.48
TRIM35-202ENST00000519219 RPS6KA4O75676 772 aa12.02□□□□□ -0.49
TRIM35-202ENST00000519219 CRKLP46109 303 aaKnown RBP12.02□□□□□ -0.49
TRIM35-202ENST00000519219 CABP4P57796 275 aa12.02□□□□□ -0.49
TRIM35-202ENST00000519219 PLEKHO1Q53GL0 409 aaPredicted RBP12.02□□□□□ -0.49
TRIM35-202ENST00000519219 RC3H1Q5TC82 1133 aaKnown RBP12.02□□□□□ -0.49
TRIM35-202ENST00000519219 TIMELESSQ9UNS1 1208 aa12.02□□□□□ -0.49
TRIM35-202ENST00000519219 AFDNP55196 1824 aaKnown RBP12.02□□□□□ -0.49
TRIM35-202ENST00000519219 SBF1O95248 1867 aa12.02□□□□□ -0.49
TRIM35-202ENST00000519219 KCNA3P22001 575 aa12.01□□□□□ -0.49
TRIM35-202ENST00000519219 DDR1Q08345 913 aa12.01□□□□□ -0.49
TRIM35-202ENST00000519219 SULT6B1Q6IMI4 303 aa12.01□□□□□ -0.49
TRIM35-202ENST00000519219 NLGN1Q8N2Q7 840 aa12.01□□□□□ -0.49
TRIM35-202ENST00000519219 NFATC2IPQ8NCF5 419 aa12.01□□□□□ -0.49
TRIM35-202ENST00000519219 HSP90AB1P08238 724 aaKnown RBP12□□□□□ -0.49
TRIM35-202ENST00000519219 ADRA2BP18089 450 aa12□□□□□ -0.49
TRIM35-202ENST00000519219 RFC4P35249 363 aa12□□□□□ -0.49
TRIM35-202ENST00000519219 MTHFSP49914 203 aa12□□□□□ -0.49
TRIM35-202ENST00000519219 TGFB2P61812 414 aa12□□□□□ -0.49
TRIM35-202ENST00000519219 EIF4G2P78344 907 aaKnown RBP eCLIP12□□□□□ -0.49
TRIM35-202ENST00000519219 FKBP8Q14318 412 aa12□□□□□ -0.49
TRIM35-202ENST00000519219 ARHGAP27Q6ZUM4 889 aa12□□□□□ -0.49
TRIM35-202ENST00000519219 MORC1Q86VD1 984 aa12□□□□□ -0.49
TRIM35-202ENST00000519219 NMRK2Q9NPI5 230 aa12□□□□□ -0.49
TRIM35-202ENST00000519219 FCHSD2O94868 740 aa11.99□□□□□ -0.49
TRIM35-202ENST00000519219 IL13P35225 146 aa11.99□□□□□ -0.49
TRIM35-202ENST00000519219 AMOTQ4VCS5 1084 aa11.99□□□□□ -0.49
TRIM35-202ENST00000519219 INTS5Q6P9B9 1019 aaKnown RBP11.99□□□□□ -0.49
TRIM35-202ENST00000519219 CCDC87Q9NVE4 849 aa11.99□□□□□ -0.49
TRIM35-202ENST00000519219 PARP3Q9Y6F1 533 aa11.99□□□□□ -0.49
TRIM35-202ENST00000519219 KCPQ6ZWJ8 1503 aa11.98□□□□□ -0.49
TRIM35-202ENST00000519219 USP42Q9H9J4 1324 aaKnown RBP11.98□□□□□ -0.49
TRIM35-202ENST00000519219 C1orf141Q5JVX7 400 aa11.98□□□□□ -0.49
TRIM35-202ENST00000519219 LGR6Q9HBX8 967 aa11.98□□□□□ -0.49
TRIM35-202ENST00000519219 CCDC88AQ3V6T2 1871 aa11.97□□□□□ -0.49
TRIM35-202ENST00000519219 MRC1P22897 1456 aa11.97□□□□□ -0.49
TRIM35-202ENST00000519219 CLSPNQ9HAW4 1339 aa11.97□□□□□ -0.49
TRIM35-202ENST00000519219 CHRNA5P30532 468 aa11.97□□□□□ -0.49
TRIM35-202ENST00000519219 DNAJC10Q8IXB1 793 aa11.97□□□□□ -0.49
TRIM35-202ENST00000519219 UBR2Q8IWV8 1755 aa11.97□□□□□ -0.49
TRIM35-202ENST00000519219 WDR90Q96KV7 1748 aa11.97□□□□□ -0.49
TRIM35-202ENST00000519219 SLC39A6Q13433 755 aa11.96□□□□□ -0.49
TRIM35-202ENST00000519219 AMER1Q5JTC6 1135 aaPredicted RBP11.96□□□□□ -0.49
TRIM35-202ENST00000519219 C9orf131Q5VYM1 1079 aa11.96□□□□□ -0.49
TRIM35-202ENST00000519219 DLEC1Q9Y238 1755 aa11.96□□□□□ -0.49
TRIM35-202ENST00000519219 NRXN2Q9P2S2 1712 aa11.96□□□□□ -0.49
TRIM35-202ENST00000519219 POLRMTO00411 1230 aaKnown RBP11.95□□□□□ -0.5
TRIM35-202ENST00000519219 HMOX1P09601 288 aa11.95□□□□□ -0.5
TRIM35-202ENST00000519219 SOS1Q07889 1333 aaPredicted RBP11.94□□□□□ -0.5
TRIM35-202ENST00000519219 ANKRD31Q8N7Z5 1873 aa11.94□□□□□ -0.5
TRIM35-202ENST00000519219 RNMTO43148 476 aaKnown RBP11.94□□□□□ -0.5
TRIM35-202ENST00000519219 TM4SF1P30408 202 aa11.94□□□□□ -0.5
TRIM35-202ENST00000519219 HTRA3P83110 453 aa11.94□□□□□ -0.5
TRIM35-202ENST00000519219 USPL1Q5W0Q7 1092 aa11.94□□□□□ -0.5
TRIM35-202ENST00000519219 SLC52A2Q9HAB3 445 aa11.94□□□□□ -0.5
TRIM35-202ENST00000519219 KIF7Q2M1P5 1343 aa11.93□□□□□ -0.5
TRIM35-202ENST00000519219 CYP19A1P11511 503 aaPredicted RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms