RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 CABP4P57796 275 aa40.03■■■■■ 4
SYNPO-203ENST00000518872 CNGB1Q14028 1251 aaPredicted RBP40.02■■■■■ 4
SYNPO-203ENST00000518872 ADAMTS7Q9UKP4 1686 aa40.01■■■■■ 4
SYNPO-203ENST00000518872 AK7Q96M32 723 aa40■■■■□ 3.99
SYNPO-203ENST00000518872 FHDC1Q9C0D6 1143 aaPredicted RBP40■■■■□ 3.99
SYNPO-203ENST00000518872 POLD1P28340 1107 aa39.99■■■■□ 3.99
SYNPO-203ENST00000518872 ATP6V1AP38606 617 aa39.99■■■■□ 3.99
SYNPO-203ENST00000518872 LINC00116Q8NCU8 138 aa39.99■■■■□ 3.99
SYNPO-203ENST00000518872 SYT17Q9BSW7 474 aa39.99■■■■□ 3.99
SYNPO-203ENST00000518872 ITPK1Q13572 414 aa39.98■■■■□ 3.99
SYNPO-203ENST00000518872 COL5A3P25940 1745 aaPredicted RBP39.96■■■■□ 3.99
SYNPO-203ENST00000518872 MRC1P22897 1456 aa39.96■■■■□ 3.99
SYNPO-203ENST00000518872 CFAP53Q96M91 514 aa39.96■■■■□ 3.99
SYNPO-203ENST00000518872 CICQ96RK0 1608 aaPredicted RBP39.94■■■■□ 3.99
SYNPO-203ENST00000518872 PPP2R1AP30153 589 aa39.94■■■■□ 3.98
SYNPO-203ENST00000518872 NFATC2IPQ8NCF5 419 aa39.94■■■■□ 3.98
SYNPO-203ENST00000518872 SSFA2P28290 1259 aa39.93■■■■□ 3.98
SYNPO-203ENST00000518872 MTHFSDQ2M296 383 aaKnown RBP39.93■■■■□ 3.98
SYNPO-203ENST00000518872 SLC4A9Q96Q91 983 aa39.93■■■■□ 3.98
SYNPO-203ENST00000518872 U2SURPO15042 1029 aaKnown RBP39.92■■■■□ 3.98
SYNPO-203ENST00000518872 MSH5O43196 834 aa39.92■■■■□ 3.98
SYNPO-203ENST00000518872 AMIGO3Q86WK7 504 aa39.91■■■■□ 3.98
SYNPO-203ENST00000518872 DCAF8L1A6NGE4 600 aa39.9■■■■□ 3.98
SYNPO-203ENST00000518872 SLC52A2Q9HAB3 445 aa39.89■■■■□ 3.98
SYNPO-203ENST00000518872 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP39.88■■■■□ 3.97
SYNPO-203ENST00000518872 RNMTO43148 476 aaKnown RBP39.88■■■■□ 3.97
SYNPO-203ENST00000518872 RBM42Q9BTD8 480 aaKnown RBP39.88■■■■□ 3.97
SYNPO-203ENST00000518872 LGR6Q9HBX8 967 aa39.87■■■■□ 3.97
SYNPO-203ENST00000518872 RC3H1Q5TC82 1133 aaKnown RBP39.86■■■■□ 3.97
SYNPO-203ENST00000518872 NUDCQ9Y266 331 aa39.85■■■■□ 3.97
SYNPO-203ENST00000518872 CNTNAP4Q9C0A0 1308 aa39.85■■■■□ 3.97
SYNPO-203ENST00000518872 MYH14Q7Z406 1995 aaKnown RBP39.84■■■■□ 3.97
SYNPO-203ENST00000518872 GNPATO15228 680 aa39.84■■■■□ 3.97
SYNPO-203ENST00000518872 GAS2L2Q8NHY3 880 aa39.83■■■■□ 3.97
SYNPO-203ENST00000518872 TJP1Q07157 1748 aa39.82■■■■□ 3.97
SYNPO-203ENST00000518872 PHF14O94880 888 aa39.81■■■■□ 3.96
SYNPO-203ENST00000518872 RSPH6AQ9H0K4 717 aa39.81■■■■□ 3.96
SYNPO-203ENST00000518872 MSL1Q68DK7 614 aa39.79■■■■□ 3.96
SYNPO-203ENST00000518872 PTCD1O75127 700 aaKnown RBP39.78■■■■□ 3.96
SYNPO-203ENST00000518872 ADRA2BP18089 450 aa39.77■■■■□ 3.96
SYNPO-203ENST00000518872 RTCBQ9Y3I0 505 aaKnown RBP39.77■■■■□ 3.96
SYNPO-203ENST00000518872 SMIM5Q71RC9 77 aa39.76■■■■□ 3.96
SYNPO-203ENST00000518872 SIPA1L3O60292 1781 aaPredicted RBP39.75■■■■□ 3.95
SYNPO-203ENST00000518872 UBR2Q8IWV8 1755 aa39.75■■■■□ 3.95
SYNPO-203ENST00000518872 PRKAR2BP31323 418 aa39.75■■■■□ 3.95
SYNPO-203ENST00000518872 GNAT3A8MTJ3 354 aa39.74■■■■□ 3.95
SYNPO-203ENST00000518872 RPS6KA4O75676 772 aa39.73■■■■□ 3.95
SYNPO-203ENST00000518872 FCHSD2O94868 740 aa39.73■■■■□ 3.95
SYNPO-203ENST00000518872 KCPQ6ZWJ8 1503 aa39.73■■■■□ 3.95
SYNPO-203ENST00000518872 U2AF1L5P0DN76 240 aaPredicted RBP39.71■■■■□ 3.95
SYNPO-203ENST00000518872 U2AF1Q01081 240 aaKnown RBP eCLIP39.71■■■■□ 3.95
SYNPO-203ENST00000518872 TRAPPC3LQ5T215 181 aa39.71■■■■□ 3.95
SYNPO-203ENST00000518872 PHACTR3Q96KR7 559 aa39.71■■■■□ 3.95
SYNPO-203ENST00000518872 C4AP0C0L4 1744 aa39.7■■■■□ 3.95
SYNPO-203ENST00000518872 KLHL34Q8N239 644 aa39.69■■■■□ 3.94
SYNPO-203ENST00000518872 IL17REQ8NFR9 667 aa39.69■■■■□ 3.94
SYNPO-203ENST00000518872 CEMIPQ8WUJ3 1361 aa39.69■■■■□ 3.94
SYNPO-203ENST00000518872 CRKLP46109 303 aaKnown RBP39.68■■■■□ 3.94
SYNPO-203ENST00000518872 CD2APQ9Y5K6 639 aa39.67■■■■□ 3.94
SYNPO-203ENST00000518872 SLC39A6Q13433 755 aa39.66■■■■□ 3.94
SYNPO-203ENST00000518872 CHD4Q14839 1912 aa39.65■■■■□ 3.94
SYNPO-203ENST00000518872 VSIG10Q8N0Z9 540 aa39.65■■■■□ 3.94
SYNPO-203ENST00000518872 NLGN2Q8NFZ4 835 aa39.65■■■■□ 3.94
SYNPO-203ENST00000518872 ARHGEF1Q92888 912 aaKnown RBP39.65■■■■□ 3.94
SYNPO-203ENST00000518872 UTRNP46939 3433 aa39.63■■■■□ 3.93
SYNPO-203ENST00000518872 TEFQ10587 303 aa39.63■■■■□ 3.93
SYNPO-203ENST00000518872 RALBP1Q15311 655 aa39.62■■■■□ 3.93
SYNPO-203ENST00000518872 DNAJC10Q8IXB1 793 aa39.62■■■■□ 3.93
SYNPO-203ENST00000518872 YY1P25490 414 aa39.6■■■■□ 3.93
SYNPO-203ENST00000518872 INTS5Q6P9B9 1019 aaKnown RBP39.6■■■■□ 3.93
SYNPO-203ENST00000518872 NLGN1Q8N2Q7 840 aa39.6■■■■□ 3.93
SYNPO-203ENST00000518872 RFC4P35249 363 aa39.59■■■■□ 3.93
SYNPO-203ENST00000518872 CYP19A1P11511 503 aaPredicted RBP39.57■■■■□ 3.93
SYNPO-203ENST00000518872 DDX10Q13206 875 aaKnown RBP39.57■■■■□ 3.93
SYNPO-203ENST00000518872 TTC5Q8N0Z6 440 aa39.57■■■■□ 3.93
SYNPO-203ENST00000518872 CCDC87Q9NVE4 849 aa39.57■■■■□ 3.93
SYNPO-203ENST00000518872 GYS1P13807 737 aa39.56■■■■□ 3.92
SYNPO-203ENST00000518872 ZNF790Q6PG37 636 aa39.56■■■■□ 3.92
SYNPO-203ENST00000518872 KIF13BQ9NQT8 1826 aa39.56■■■■□ 3.92
SYNPO-203ENST00000518872 HTATSF1O43719 755 aaKnown RBP39.54■■■■□ 3.92
SYNPO-203ENST00000518872 GPR162Q16538 588 aa39.54■■■■□ 3.92
SYNPO-203ENST00000518872 MMP10P09238 476 aa39.53■■■■□ 3.92
SYNPO-203ENST00000518872 SOS1Q07889 1333 aaPredicted RBP39.52■■■■□ 3.92
SYNPO-203ENST00000518872 USP42Q9H9J4 1324 aaKnown RBP39.51■■■■□ 3.92
SYNPO-203ENST00000518872 GOLGB1Q14789 3259 aaKnown RBP39.5■■■■□ 3.91
SYNPO-203ENST00000518872 DLG5Q8TDM6 1919 aa39.5■■■■□ 3.91
SYNPO-203ENST00000518872 HEG1Q9ULI3 1381 aa39.5■■■■□ 3.91
SYNPO-203ENST00000518872 RTF1Q92541 710 aaKnown RBP39.5■■■■□ 3.91
SYNPO-203ENST00000518872 ZNF496Q96IT1 587 aaPredicted RBP39.49■■■■□ 3.91
SYNPO-203ENST00000518872 PLEKHF1Q96S99 279 aa39.47■■■■□ 3.91
SYNPO-203ENST00000518872 TEX13AQ9BXU3 409 aaPredicted RBP39.47■■■■□ 3.91
SYNPO-203ENST00000518872 NEFMP07197 916 aa39.46■■■■□ 3.91
SYNPO-203ENST00000518872 ZBTB1Q9Y2K1 713 aa39.46■■■■□ 3.91
SYNPO-203ENST00000518872 STARD3NLO95772 234 aa39.45■■■■□ 3.91
SYNPO-203ENST00000518872 FMNL2Q96PY5 1086 aa39.45■■■■□ 3.91
SYNPO-203ENST00000518872 BTBD11A6QL63 1104 aa39.44■■■■□ 3.9
SYNPO-203ENST00000518872 PNNQ9H307 717 aaKnown RBP39.44■■■■□ 3.9
SYNPO-203ENST00000518872 COL15A1P39059 1388 aa39.44■■■■□ 3.9
SYNPO-203ENST00000518872 C10orf71Q711Q0 1435 aa39.43■■■■□ 3.9
SYNPO-203ENST00000518872 GRIN3BO60391 1043 aa39.43■■■■□ 3.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms