RNA–Protein interactions for RNA: ENST00000517824.5

SPIDR-204, Transcript of scaffold protein involved in DNA repair, human

TSL 5

Gene SPIDR, Length 849 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-204	ENST00000517824	CRB1	P82279	1406 aa		13.57	□□□□□ -0.24
SPIDR-204	ENST00000517824	HDAC1	Q13547	482 aa	Predicted RBP	13.57	□□□□□ -0.24
SPIDR-204	ENST00000517824	MTHFSD	Q2M296	383 aa	Known RBP	13.57	□□□□□ -0.24
SPIDR-204	ENST00000517824	C8orf58	Q8NAV2	365 aa		13.57	□□□□□ -0.24
SPIDR-204	ENST00000517824	IP6K1	Q92551	441 aa		13.57	□□□□□ -0.24
SPIDR-204	ENST00000517824	STK31	Q9BXU1	1019 aa		13.57	□□□□□ -0.24
SPIDR-204	ENST00000517824	ABCC4	O15439	1325 aa		13.57	□□□□□ -0.24
SPIDR-204	ENST00000517824	SLIT2	O94813	1529 aa		13.56	□□□□□ -0.24
SPIDR-204	ENST00000517824	CHL1	O00533	1208 aa		13.56	□□□□□ -0.24
SPIDR-204	ENST00000517824	PLEKHG5	O94827	1062 aa		13.56	□□□□□ -0.24
SPIDR-204	ENST00000517824	UNC5CL	Q8IV45	518 aa		13.56	□□□□□ -0.24
SPIDR-204	ENST00000517824	TSPYL6	Q8N831	410 aa		13.56	□□□□□ -0.24
SPIDR-204	ENST00000517824	PDZRN3	Q9UPQ7	1066 aa		13.56	□□□□□ -0.24
SPIDR-204	ENST00000517824	PTPRC	P08575	1304 aa		13.56	□□□□□ -0.24
SPIDR-204	ENST00000517824	CRYBG1	Q9Y4K1	1723 aa		13.56	□□□□□ -0.24
SPIDR-204	ENST00000517824	NCAPD2	Q15021	1401 aa		13.56	□□□□□ -0.24
SPIDR-204	ENST00000517824	ABCC6	O95255	1503 aa		13.55	□□□□□ -0.24
SPIDR-204	ENST00000517824	KRT28	Q7Z3Y7	464 aa		13.55	□□□□□ -0.24
SPIDR-204	ENST00000517824	SIPA1L3	O60292	1781 aa	Predicted RBP	13.54	□□□□□ -0.24
SPIDR-204	ENST00000517824	SCN11A	Q9UI33	1791 aa		13.54	□□□□□ -0.24
SPIDR-204	ENST00000517824	CHMP4A	Q9BY43	222 aa		13.54	□□□□□ -0.24
SPIDR-204	ENST00000517824	SOS1	Q07889	1333 aa	Predicted RBP	13.54	□□□□□ -0.24
SPIDR-204	ENST00000517824	GLI3	P10071	1580 aa		13.54	□□□□□ -0.24
SPIDR-204	ENST00000517824	PARP4	Q9UKK3	1724 aa	Known RBP	13.53	□□□□□ -0.24
SPIDR-204	ENST00000517824	C1orf141	Q5JVX7	400 aa		13.53	□□□□□ -0.24
SPIDR-204	ENST00000517824	CCDC125	Q86Z20	511 aa		13.53	□□□□□ -0.24
SPIDR-204	ENST00000517824	ZBTB40	Q9NUA8	1239 aa		13.53	□□□□□ -0.24
SPIDR-204	ENST00000517824	C8orf34	Q49A92	452 aa		13.52	□□□□□ -0.25
SPIDR-204	ENST00000517824	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.52	□□□□□ -0.25
SPIDR-204	ENST00000517824	USHBP1	Q8N6Y0	703 aa		13.52	□□□□□ -0.25
SPIDR-204	ENST00000517824	CABLES1	Q8TDN4	633 aa		13.52	□□□□□ -0.25
SPIDR-204	ENST00000517824	BABAM1	Q9NWV8	329 aa		13.52	□□□□□ -0.25
SPIDR-204	ENST00000517824	USP19	O94966	1318 aa		13.52	□□□□□ -0.25
SPIDR-204	ENST00000517824	TNS3	Q68CZ2	1445 aa		13.52	□□□□□ -0.25
SPIDR-204	ENST00000517824	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.52	□□□□□ -0.25
SPIDR-204	ENST00000517824	OVOS2	A0A0G2JMS6	1433 aa		13.51	□□□□□ -0.25
SPIDR-204	ENST00000517824	GCC1	Q96CN9	775 aa		13.51	□□□□□ -0.25
SPIDR-204	ENST00000517824	ABCA3	Q99758	1704 aa		13.5	□□□□□ -0.25
SPIDR-204	ENST00000517824	GC	P02774	474 aa		13.5	□□□□□ -0.25
SPIDR-204	ENST00000517824	CCDC30	Q5VVM6	783 aa		13.5	□□□□□ -0.25
SPIDR-204	ENST00000517824	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.5	□□□□□ -0.25
SPIDR-204	ENST00000517824	AK9	Q5TCS8	1911 aa		13.5	□□□□□ -0.25
SPIDR-204	ENST00000517824	PXDNL	A1KZ92	1463 aa		13.49	□□□□□ -0.25
SPIDR-204	ENST00000517824	TEF	Q10587	303 aa		13.49	□□□□□ -0.25
SPIDR-204	ENST00000517824	VPS72	Q15906	364 aa		13.49	□□□□□ -0.25
SPIDR-204	ENST00000517824	AMOT	Q4VCS5	1084 aa		13.49	□□□□□ -0.25
SPIDR-204	ENST00000517824	SEPT12	Q8IYM1	358 aa		13.49	□□□□□ -0.25
SPIDR-204	ENST00000517824	ANKRD24	Q8TF21	1146 aa		13.49	□□□□□ -0.25
SPIDR-204	ENST00000517824	COL18A1	P39060	1754 aa		13.48	□□□□□ -0.25
SPIDR-204	ENST00000517824	PKD1L3	Q7Z443	1732 aa		13.48	□□□□□ -0.25
SPIDR-204	ENST00000517824	CCT4	P50991	539 aa	Known RBP	13.48	□□□□□ -0.25
SPIDR-204	ENST00000517824	TAF7	Q15545	349 aa	Predicted RBP	13.48	□□□□□ -0.25
SPIDR-204	ENST00000517824	SMC5	Q8IY18	1101 aa		13.48	□□□□□ -0.25
SPIDR-204	ENST00000517824	ONECUT3	O60422	494 aa	Predicted RBP	13.47	□□□□□ -0.25
SPIDR-204	ENST00000517824	HMMR	O75330	724 aa		13.47	□□□□□ -0.25
SPIDR-204	ENST00000517824	SLC4A2	P04920	1241 aa		13.47	□□□□□ -0.25
SPIDR-204	ENST00000517824	KRT24	Q2M2I5	525 aa		13.47	□□□□□ -0.25
SPIDR-204	ENST00000517824	RTL5	Q5HYW3	569 aa	Predicted RBP	13.47	□□□□□ -0.25
SPIDR-204	ENST00000517824	DEFB132	Q7Z7B7	95 aa		13.47	□□□□□ -0.25
SPIDR-204	ENST00000517824	ARHGEF25	Q86VW2	580 aa		13.47	□□□□□ -0.25
SPIDR-204	ENST00000517824	C1orf115	Q9H7X2	142 aa		13.47	□□□□□ -0.25
SPIDR-204	ENST00000517824	MIS18A	Q9NYP9	233 aa		13.47	□□□□□ -0.25
SPIDR-204	ENST00000517824	ZBTB7B	O15156	539 aa	Predicted RBP	13.46	□□□□□ -0.25
SPIDR-204	ENST00000517824	EIF5B	O60841	1220 aa	Known RBP	13.46	□□□□□ -0.25
SPIDR-204	ENST00000517824	CSB-PGBD3	P0DP91	1061 aa		13.46	□□□□□ -0.25
SPIDR-204	ENST00000517824	BECN1	Q14457	450 aa		13.46	□□□□□ -0.25
SPIDR-204	ENST00000517824	AKAP4	Q5JQC9	854 aa		13.46	□□□□□ -0.25
SPIDR-204	ENST00000517824	INTS3	Q68E01	1043 aa	Known RBP	13.46	□□□□□ -0.25
SPIDR-204	ENST00000517824	LAMB4	A4D0S4	1761 aa		13.45	□□□□□ -0.26
SPIDR-204	ENST00000517824	ADAMTS7	Q9UKP4	1686 aa		13.45	□□□□□ -0.26
SPIDR-204	ENST00000517824	NUCB1	Q02818	461 aa		13.45	□□□□□ -0.26
SPIDR-204	ENST00000517824	FKBP5	Q13451	457 aa	Predicted RBP	13.45	□□□□□ -0.26
SPIDR-204	ENST00000517824	NBPF6	Q5VWK0	638 aa		13.45	□□□□□ -0.26
SPIDR-204	ENST00000517824	SLC4A10	Q6U841	1118 aa		13.45	□□□□□ -0.26
SPIDR-204	ENST00000517824	CHD1L	Q86WJ1	897 aa		13.45	□□□□□ -0.26
SPIDR-204	ENST00000517824	RAPGEF4	Q8WZA2	1011 aa		13.45	□□□□□ -0.26
SPIDR-204	ENST00000517824	NBPF4	Q96M43	638 aa		13.45	□□□□□ -0.26
SPIDR-204	ENST00000517824	AFDN	P55196	1824 aa	Known RBP	13.44	□□□□□ -0.26
SPIDR-204	ENST00000517824	BRWD3	Q6RI45	1802 aa		13.44	□□□□□ -0.26
SPIDR-204	ENST00000517824	HDGFL1	Q5TGJ6	251 aa		13.44	□□□□□ -0.26
SPIDR-204	ENST00000517824	ANKRD45	Q5TZF3	282 aa		13.44	□□□□□ -0.26
SPIDR-204	ENST00000517824	LNPK	Q9C0E8	428 aa		13.44	□□□□□ -0.26
SPIDR-204	ENST00000517824	TAT	P17735	454 aa	Predicted RBP	13.43	□□□□□ -0.26
SPIDR-204	ENST00000517824	ZC3H6	P61129	1189 aa	Known RBP	13.43	□□□□□ -0.26
SPIDR-204	ENST00000517824	KRT27	Q7Z3Y8	459 aa		13.43	□□□□□ -0.26
SPIDR-204	ENST00000517824	NLRP2	Q9NX02	1062 aa		13.43	□□□□□ -0.26
SPIDR-204	ENST00000517824	CCDC9	Q9Y3X0	531 aa	Known RBP	13.43	□□□□□ -0.26
SPIDR-204	ENST00000517824	C5	P01031	1676 aa		13.43	□□□□□ -0.26
SPIDR-204	ENST00000517824	PLCH1	Q4KWH8	1693 aa		13.43	□□□□□ -0.26
SPIDR-204	ENST00000517824	CEMIP	Q8WUJ3	1361 aa		13.43	□□□□□ -0.26
SPIDR-204	ENST00000517824	NWD2	Q9ULI1	1742 aa		13.42	□□□□□ -0.26
SPIDR-204	ENST00000517824	HOXB7	P09629	217 aa		13.42	□□□□□ -0.26
SPIDR-204	ENST00000517824	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.42	□□□□□ -0.26
SPIDR-204	ENST00000517824	ERBB3	P21860	1342 aa		13.41	□□□□□ -0.26
SPIDR-204	ENST00000517824	BTBD11	A6QL63	1104 aa		13.41	□□□□□ -0.26
SPIDR-204	ENST00000517824	GNAI3	P08754	354 aa		13.41	□□□□□ -0.26
SPIDR-204	ENST00000517824	FLII	Q13045	1269 aa		13.41	□□□□□ -0.26
SPIDR-204	ENST00000517824	IL17RE	Q8NFR9	667 aa		13.41	□□□□□ -0.26
SPIDR-204	ENST00000517824	NECTIN2	Q92692	538 aa		13.41	□□□□□ -0.26
SPIDR-204	ENST00000517824	SPG7	Q9UQ90	795 aa		13.41	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 53 ms