RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 SPATA31A5Q5VU36 1347 aa9.41□□□□□ -0.9
CLIP1-205ENST00000514271 SPATA31A7Q8IWB4 1347 aa9.41□□□□□ -0.9
CLIP1-205ENST00000514271 ONECUT3O60422 494 aaPredicted RBP9.4□□□□□ -0.9
CLIP1-205ENST00000514271 WDR63Q8IWG1 891 aa9.4□□□□□ -0.9
CLIP1-205ENST00000514271 PDLIM2Q96JY6 352 aa9.4□□□□□ -0.9
CLIP1-205ENST00000514271 CCDC9Q9Y3X0 531 aaKnown RBP9.4□□□□□ -0.9
CLIP1-205ENST00000514271 C8orf37Q96NL8 207 aa9.4□□□□□ -0.9
CLIP1-205ENST00000514271 RGPD3A6NKT7 1758 aaPredicted RBP9.4□□□□□ -0.9
CLIP1-205ENST00000514271 RGPD4Q7Z3J3 1758 aa9.4□□□□□ -0.9
CLIP1-205ENST00000514271 AMPHP49418 695 aa9.4□□□□□ -0.91
CLIP1-205ENST00000514271 FAM83GA6ND36 823 aa9.39□□□□□ -0.91
CLIP1-205ENST00000514271 MCM4P33991 863 aa9.39□□□□□ -0.91
CLIP1-205ENST00000514271 PNNQ9H307 717 aaKnown RBP9.39□□□□□ -0.91
CLIP1-205ENST00000514271 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.39□□□□□ -0.91
CLIP1-205ENST00000514271 ERBB3P21860 1342 aa9.39□□□□□ -0.91
CLIP1-205ENST00000514271 HOXC9P31274 260 aa9.39□□□□□ -0.91
CLIP1-205ENST00000514271 EVA1CP58658 441 aa9.39□□□□□ -0.91
CLIP1-205ENST00000514271 DISP2A7MBM2 1401 aa9.39□□□□□ -0.91
CLIP1-205ENST00000514271 MAP3K19Q56UN5 1328 aa9.39□□□□□ -0.91
CLIP1-205ENST00000514271 SPATA31A1Q5TZJ5 1347 aa9.39□□□□□ -0.91
CLIP1-205ENST00000514271 RRP9O43818 475 aaKnown RBP9.39□□□□□ -0.91
CLIP1-205ENST00000514271 RXRBP28702 533 aa9.39□□□□□ -0.91
CLIP1-205ENST00000514271 GGNBP2Q9H3C7 697 aa9.39□□□□□ -0.91
CLIP1-205ENST00000514271 POTEHQ6S545 545 aa9.38□□□□□ -0.91
CLIP1-205ENST00000514271 GJD4Q96KN9 370 aaPredicted RBP9.38□□□□□ -0.91
CLIP1-205ENST00000514271 ADAMTS2O95450 1211 aa9.38□□□□□ -0.91
CLIP1-205ENST00000514271 CT47B1P0C2W7 299 aaPredicted RBP9.38□□□□□ -0.91
CLIP1-205ENST00000514271 GAS2L3Q86XJ1 694 aa9.38□□□□□ -0.91
CLIP1-205ENST00000514271 BTG4Q9NY30 223 aa9.38□□□□□ -0.91
CLIP1-205ENST00000514271 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.38□□□□□ -0.911e-6■■■■□ 25.9
CLIP1-205ENST00000514271 RAB3GAP1Q15042 981 aa9.37□□□□□ -0.91
CLIP1-205ENST00000514271 TCP11L2Q8N4U5 519 aa9.37□□□□□ -0.91
CLIP1-205ENST00000514271 BCCIPQ9P287 314 aaKnown RBP eCLIP9.37□□□□□ -0.91
CLIP1-205ENST00000514271 PANK2Q9BZ23 570 aa9.37□□□□□ -0.91
CLIP1-205ENST00000514271 TNS2Q63HR2 1409 aa9.37□□□□□ -0.91
CLIP1-205ENST00000514271 QTRT2Q9H974 415 aaKnown RBP9.37□□□□□ -0.91
CLIP1-205ENST00000514271 ADAMTS7Q9UKP4 1686 aa9.36□□□□□ -0.91
CLIP1-205ENST00000514271 IL16Q14005 1332 aa9.36□□□□□ -0.91
CLIP1-205ENST00000514271 OVOS2A0A0G2JMS6 1433 aa9.36□□□□□ -0.91
CLIP1-205ENST00000514271 CABLES1Q8TDN4 633 aa9.36□□□□□ -0.91
CLIP1-205ENST00000514271 POLKQ9UBT6 870 aa9.36□□□□□ -0.91
CLIP1-205ENST00000514271 ATP10DQ9P241 1426 aa9.36□□□□□ -0.91
CLIP1-205ENST00000514271 SIPA1L3O60292 1781 aaPredicted RBP9.36□□□□□ -0.91
CLIP1-205ENST00000514271 ZC3H6P61129 1189 aaKnown RBP9.36□□□□□ -0.91
CLIP1-205ENST00000514271 CCDC125Q86Z20 511 aa9.36□□□□□ -0.91
CLIP1-205ENST00000514271 ANKRD24Q8TF21 1146 aa9.36□□□□□ -0.91
CLIP1-205ENST00000514271 KDRP35968 1356 aa9.35□□□□□ -0.91
CLIP1-205ENST00000514271 TNNQ9UQP3 1299 aa9.35□□□□□ -0.91
CLIP1-205ENST00000514271 A0A0U1RQG5 324 aaPredicted RBP9.35□□□□□ -0.91
CLIP1-205ENST00000514271 IGSF1Q8N6C5 1336 aa9.35□□□□□ -0.91
CLIP1-205ENST00000514271 RIPK4P57078 832 aa9.35□□□□□ -0.91
CLIP1-205ENST00000514271 L1TD1Q5T7N2 865 aaKnown RBP9.35□□□□□ -0.91
CLIP1-205ENST00000514271 NUTM2GQ5VZR2 741 aa9.35□□□□□ -0.91
CLIP1-205ENST00000514271 KIF16BQ96L93 1317 aa9.34□□□□□ -0.91
CLIP1-205ENST00000514271 KDM3BQ7LBC6 1761 aa9.34□□□□□ -0.91
CLIP1-205ENST00000514271 CSB-PGBD3P0DP91 1061 aa9.33□□□□□ -0.92
CLIP1-205ENST00000514271 CC2D1BQ5T0F9 858 aaKnown RBP9.33□□□□□ -0.92
CLIP1-205ENST00000514271 TOM1L2Q6ZVM7 507 aa9.33□□□□□ -0.92
CLIP1-205ENST00000514271 NHSQ6T4R5 1651 aa9.33□□□□□ -0.92
CLIP1-205ENST00000514271 AMOTQ4VCS5 1084 aa9.33□□□□□ -0.92
CLIP1-205ENST00000514271 ZBTB40Q9NUA8 1239 aa9.33□□□□□ -0.92
CLIP1-205ENST00000514271 CIZ1Q9ULV3 898 aaPredicted RBP9.33□□□□□ -0.92
CLIP1-205ENST00000514271 TRIM35Q9UPQ4 493 aa9.33□□□□□ -0.92
CLIP1-205ENST00000514271 DIAPH1O60610 1272 aaKnown RBP9.33□□□□□ -0.92
CLIP1-205ENST00000514271 IL2RBP14784 551 aa9.33□□□□□ -0.92
CLIP1-205ENST00000514271 ZRANB1Q9UGI0 708 aa9.33□□□□□ -0.92
CLIP1-205ENST00000514271 SHANK3Q9BYB0 1731 aa9.33□□□□□ -0.92
CLIP1-205ENST00000514271 BRWD3Q6RI45 1802 aa9.33□□□□□ -0.92
CLIP1-205ENST00000514271 RGPD2P0DJD1 1756 aa9.32□□□□□ -0.92
CLIP1-205ENST00000514271 HSP90AB1P08238 724 aaKnown RBP9.32□□□□□ -0.92
CLIP1-205ENST00000514271 HS1BP3Q53T59 392 aa9.32□□□□□ -0.92
CLIP1-205ENST00000514271 RGS17Q9UGC6 210 aaPredicted RBP9.32□□□□□ -0.92
CLIP1-205ENST00000514271 ZNF831Q5JPB2 1677 aa9.32□□□□□ -0.92
CLIP1-205ENST00000514271 TATP17735 454 aaPredicted RBP9.32□□□□□ -0.92
CLIP1-205ENST00000514271 MVPQ14764 893 aaKnown RBP9.32□□□□□ -0.92
CLIP1-205ENST00000514271 PDZRN3Q9UPQ7 1066 aa9.32□□□□□ -0.92
CLIP1-205ENST00000514271 ZNF500O60304 480 aaPredicted RBP9.32□□□□□ -0.92
CLIP1-205ENST00000514271 MRE11P49959 708 aa9.32□□□□□ -0.92
CLIP1-205ENST00000514271 ZNF445P59923 1031 aa9.32□□□□□ -0.92
CLIP1-205ENST00000514271 NUCB1Q02818 461 aa9.31□□□□□ -0.92
CLIP1-205ENST00000514271 CD2BP2O95400 341 aaKnown RBP9.31□□□□□ -0.92
CLIP1-205ENST00000514271 CHRNA2Q15822 529 aa9.31□□□□□ -0.92
CLIP1-205ENST00000514271 RAPGEF4Q8WZA2 1011 aa9.31□□□□□ -0.92
CLIP1-205ENST00000514271 ARID3AQ99856 593 aa9.31□□□□□ -0.92
CLIP1-205ENST00000514271 SPG7Q9UQ90 795 aa9.31□□□□□ -0.92
CLIP1-205ENST00000514271 CICQ96RK0 1608 aaPredicted RBP9.31□□□□□ -0.92
CLIP1-205ENST00000514271 PCDH11XQ9BZA7 1347 aa9.3□□□□□ -0.92
CLIP1-205ENST00000514271 PCDH11YQ9BZA8 1340 aa9.3□□□□□ -0.92
CLIP1-205ENST00000514271 APAF1O14727 1248 aa9.3□□□□□ -0.92
CLIP1-205ENST00000514271 IL13P35225 146 aa9.3□□□□□ -0.92
CLIP1-205ENST00000514271 NECTIN2Q92692 538 aa9.3□□□□□ -0.92
CLIP1-205ENST00000514271 TCHHQ07283 1943 aa9.3□□□□□ -0.92
CLIP1-205ENST00000514271 MTHFSP49914 203 aa9.3□□□□□ -0.92
CLIP1-205ENST00000514271 LARP1Q6PKG0 1096 aaKnown RBP9.3□□□□□ -0.92
CLIP1-205ENST00000514271 EMILIN1Q9Y6C2 1016 aa9.3□□□□□ -0.92
CLIP1-205ENST00000514271 SBF2Q86WG5 1849 aa9.3□□□□□ -0.92
CLIP1-205ENST00000514271 EIF4A2Q14240 407 aaKnown RBP9.29□□□□□ -0.92
CLIP1-205ENST00000514271 RRS1Q15050 365 aaKnown RBP9.29□□□□□ -0.92
CLIP1-205ENST00000514271 POTEAQ6S8J7 498 aa9.29□□□□□ -0.92
CLIP1-205ENST00000514271 NLRP2Q9NX02 1062 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms