RNA–Protein interactions for RNA: ENST00000513769.5

TPM3-221, Transcript of tropomyosin 3, humanhuman

TSL 3

Gene TPM3, Length 539 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-221ENST00000513769 EYA1Q99502 592 aa12.85□□□□□ -0.35
TPM3-221ENST00000513769 KDRP35968 1356 aa12.84□□□□□ -0.35
TPM3-221ENST00000513769 RIMBP2O15034 1052 aa12.84□□□□□ -0.35
TPM3-221ENST00000513769 HOXB1P14653 301 aaPredicted RBP12.84□□□□□ -0.35
TPM3-221ENST00000513769 LMOD2Q6P5Q4 547 aa12.84□□□□□ -0.35
TPM3-221ENST00000513769 HS6ST3Q8IZP7 471 aa12.84□□□□□ -0.35
TPM3-221ENST00000513769 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.84□□□□□ -0.35
TPM3-221ENST00000513769 ZNF428Q96B54 188 aa12.84□□□□□ -0.35
TPM3-221ENST00000513769 PHACTR3Q96KR7 559 aa12.84□□□□□ -0.35
TPM3-221ENST00000513769 IGSF1Q8N6C5 1336 aa12.84□□□□□ -0.35
TPM3-221ENST00000513769 NUTM2BA6NNL0 878 aaPredicted RBP12.83□□□□□ -0.36
TPM3-221ENST00000513769 NUTM2EB1AL46 878 aaPredicted RBP12.83□□□□□ -0.36
TPM3-221ENST00000513769 HMOX1P09601 288 aa12.83□□□□□ -0.36
TPM3-221ENST00000513769 RXRBP28702 533 aa12.83□□□□□ -0.36
TPM3-221ENST00000513769 NUTM2AQ8IVF1 878 aaPredicted RBP12.83□□□□□ -0.36
TPM3-221ENST00000513769 UPF1Q92900 1129 aaKnown RBP eCLIP12.83□□□□□ -0.36
TPM3-221ENST00000513769 LRRC59Q96AG4 307 aaKnown RBP12.83□□□□□ -0.36
TPM3-221ENST00000513769 HS3ST6Q96QI5 342 aa12.83□□□□□ -0.36
TPM3-221ENST00000513769 GAS2L2Q8NHY3 880 aa12.82□□□□□ -0.36
TPM3-221ENST00000513769 SLIT3O75094 1523 aa12.82□□□□□ -0.36
TPM3-221ENST00000513769 POTEB3A0JP26 581 aa12.81□□□□□ -0.36
TPM3-221ENST00000513769 HAP1P54257 671 aaPredicted RBP12.81□□□□□ -0.36
TPM3-221ENST00000513769 GNAI1P63096 354 aa12.81□□□□□ -0.36
TPM3-221ENST00000513769 XPCQ01831 940 aaPredicted RBP12.81□□□□□ -0.36
TPM3-221ENST00000513769 POTEBQ6S5H4 581 aa12.81□□□□□ -0.36
TPM3-221ENST00000513769 BABAM1Q9NWV8 329 aa12.81□□□□□ -0.36
TPM3-221ENST00000513769 RRP7AQ9Y3A4 280 aaKnown RBP12.81□□□□□ -0.36
TPM3-221ENST00000513769 TRPM3Q9HCF6 1732 aaPredicted RBP12.81□□□□□ -0.36
TPM3-221ENST00000513769 COL16A1Q07092 1604 aaPredicted RBP12.8□□□□□ -0.36
TPM3-221ENST00000513769 PHRF1Q9P1Y6 1649 aaKnown RBP12.8□□□□□ -0.36
TPM3-221ENST00000513769 AMOTQ4VCS5 1084 aa12.8□□□□□ -0.36
TPM3-221ENST00000513769 CFAP44Q96MT7 982 aa12.8□□□□□ -0.36
TPM3-221ENST00000513769 LRP6O75581 1613 aa12.8□□□□□ -0.36
TPM3-221ENST00000513769 CPDO75976 1380 aa12.8□□□□□ -0.36
TPM3-221ENST00000513769 PLEKHG2Q9H7P9 1386 aa12.8□□□□□ -0.36
TPM3-221ENST00000513769 TNS3Q68CZ2 1445 aa12.79□□□□□ -0.36
TPM3-221ENST00000513769 PXDNQ92626 1479 aa12.79□□□□□ -0.36
TPM3-221ENST00000513769 PPP1R37O75864 691 aa12.79□□□□□ -0.36
TPM3-221ENST00000513769 ZNF853P0CG23 659 aa12.79□□□□□ -0.36
TPM3-221ENST00000513769 IFT57Q9NWB7 429 aa12.79□□□□□ -0.36
TPM3-221ENST00000513769 NFAT5O94916 1531 aa12.78□□□□□ -0.36
TPM3-221ENST00000513769 ALS2Q96Q42 1657 aa12.78□□□□□ -0.36
TPM3-221ENST00000513769 SENP3-EIF4A1A0A087X0R7 540 aa12.78□□□□□ -0.36
TPM3-221ENST00000513769 MARF1Q9Y4F3 1742 aaKnown RBP12.78□□□□□ -0.36
TPM3-221ENST00000513769 PEAK1Q9H792 1746 aa12.77□□□□□ -0.36
TPM3-221ENST00000513769 RRP1P56182 461 aaKnown RBP12.77□□□□□ -0.37
TPM3-221ENST00000513769 PLEKHO1Q53GL0 409 aaPredicted RBP12.77□□□□□ -0.37
TPM3-221ENST00000513769 RTF1Q92541 710 aaKnown RBP12.77□□□□□ -0.37
TPM3-221ENST00000513769 PPP4R2Q9NY27 417 aa12.77□□□□□ -0.37
TPM3-221ENST00000513769 RGPD1P0DJD0 1748 aa12.76□□□□□ -0.37
TPM3-221ENST00000513769 C2orf72A6NCS6 295 aa12.76□□□□□ -0.37
TPM3-221ENST00000513769 MS4A1P11836 297 aa12.76□□□□□ -0.37
TPM3-221ENST00000513769 BRPF1P55201 1214 aaPredicted RBP12.76□□□□□ -0.37
TPM3-221ENST00000513769 AAMPQ13685 434 aa12.76□□□□□ -0.37
TPM3-221ENST00000513769 NBPF6Q5VWK0 638 aa12.76□□□□□ -0.37
TPM3-221ENST00000513769 AEBP1Q8IUX7 1158 aa12.76□□□□□ -0.37
TPM3-221ENST00000513769 ANKRD24Q8TF21 1146 aa12.76□□□□□ -0.37
TPM3-221ENST00000513769 NBPF4Q96M43 638 aa12.76□□□□□ -0.37
TPM3-221ENST00000513769 CHMP4AQ9BY43 222 aa12.76□□□□□ -0.37
TPM3-221ENST00000513769 ZSWIM6Q9HCJ5 1215 aa12.76□□□□□ -0.37
TPM3-221ENST00000513769 ABCC6O95255 1503 aa12.76□□□□□ -0.37
TPM3-221ENST00000513769 AHDC1Q5TGY3 1603 aaPredicted RBP12.76□□□□□ -0.37
TPM3-221ENST00000513769 GNAT3A8MTJ3 354 aa12.75□□□□□ -0.37
TPM3-221ENST00000513769 CHL1O00533 1208 aa12.75□□□□□ -0.37
TPM3-221ENST00000513769 KIF3CO14782 793 aa12.75□□□□□ -0.37
TPM3-221ENST00000513769 AFF2P51816 1311 aa12.75□□□□□ -0.37
TPM3-221ENST00000513769 ZC3H6P61129 1189 aaKnown RBP12.75□□□□□ -0.37
TPM3-221ENST00000513769 PDE3AQ14432 1141 aa12.75□□□□□ -0.37
TPM3-221ENST00000513769 MTHFSDQ2M296 383 aaKnown RBP12.75□□□□□ -0.37
TPM3-221ENST00000513769 DDX17Q92841 729 aaKnown RBP12.75□□□□□ -0.37
TPM3-221ENST00000513769 AXIN2Q9Y2T1 843 aa12.75□□□□□ -0.37
TPM3-221ENST00000513769 ERBB3P21860 1342 aa12.74□□□□□ -0.37
TPM3-221ENST00000513769 ALDH1L2Q3SY69 923 aa12.74□□□□□ -0.37
TPM3-221ENST00000513769 NCAPD2Q15021 1401 aa12.73□□□□□ -0.37
TPM3-221ENST00000513769 SOS1Q07889 1333 aaPredicted RBP12.73□□□□□ -0.37
TPM3-221ENST00000513769 RARSP54136 660 aaKnown RBP12.73□□□□□ -0.37
TPM3-221ENST00000513769 GPR153Q6NV75 609 aa12.73□□□□□ -0.37
TPM3-221ENST00000513769 LTV1Q96GA3 475 aaPredicted RBP12.73□□□□□ -0.37
TPM3-221ENST00000513769 QTRT2Q9H974 415 aaKnown RBP12.73□□□□□ -0.37
TPM3-221ENST00000513769 C8orf37Q96NL8 207 aa12.72□□□□□ -0.37
TPM3-221ENST00000513769 LTN1O94822 1766 aa12.71□□□□□ -0.37
TPM3-221ENST00000513769 FANCIQ9NVI1 1328 aa12.71□□□□□ -0.37
TPM3-221ENST00000513769 IPO8O15397 1037 aaKnown RBP12.71□□□□□ -0.37
TPM3-221ENST00000513769 RBM6P78332 1123 aaKnown RBP12.71□□□□□ -0.37
TPM3-221ENST00000513769 EXOSC9Q06265 439 aaKnown RBP12.71□□□□□ -0.37
TPM3-221ENST00000513769 TAF7Q15545 349 aaPredicted RBP12.71□□□□□ -0.37
TPM3-221ENST00000513769 AKAP4Q5JQC9 854 aa12.71□□□□□ -0.37
TPM3-221ENST00000513769 KRTAP3-3Q9BYR6 98 aa12.71□□□□□ -0.37
TPM3-221ENST00000513769 KRTAP3-2Q9BYR7 98 aa12.71□□□□□ -0.37
TPM3-221ENST00000513769 VAMP4O75379 141 aa12.7□□□□□ -0.38
TPM3-221ENST00000513769 TMC2Q8TDI7 906 aa12.7□□□□□ -0.38
TPM3-221ENST00000513769 CABLES1Q8TDN4 633 aa12.7□□□□□ -0.38
TPM3-221ENST00000513769 ARHGAP45Q92619 1136 aa12.7□□□□□ -0.38
TPM3-221ENST00000513769 NGLY1Q96IV0 654 aa12.7□□□□□ -0.38
TPM3-221ENST00000513769 ARSIQ5FYB1 569 aa12.69□□□□□ -0.38
TPM3-221ENST00000513769 SPNS2Q8IVW8 549 aa12.69□□□□□ -0.38
TPM3-221ENST00000513769 RAPGEF4Q8WZA2 1011 aa12.69□□□□□ -0.38
TPM3-221ENST00000513769 PRDM11Q9NQV5 511 aa12.69□□□□□ -0.38
TPM3-221ENST00000513769 SPG7Q9UQ90 795 aa12.69□□□□□ -0.38
TPM3-221ENST00000513769 KIAA0232Q92628 1395 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms