RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 AIMP1Q12904 312 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-218ENST00000513024 STK38Q15208 465 aa10.2□□□□□ -0.78
LIMCH1-218ENST00000513024 TSR2Q969E8 191 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-218ENST00000513024 KIAA1107Q9UPP5 1409 aa10.2□□□□□ -0.78
LIMCH1-218ENST00000513024 SYCE3A1L190 88 aa10.2□□□□□ -0.78
LIMCH1-218ENST00000513024 ARID4AP29374 1257 aaPredicted RBP10.2□□□□□ -0.78
LIMCH1-218ENST00000513024 NLRP6P59044 892 aa10.2□□□□□ -0.78
LIMCH1-218ENST00000513024 WDR33Q9C0J8 1336 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-218ENST00000513024 CEP57Q86XR8 500 aa10.2□□□□□ -0.78
LIMCH1-218ENST00000513024 MICALL1Q8N3F8 863 aa10.2□□□□□ -0.78
LIMCH1-218ENST00000513024 STK3Q13188 491 aa10.19□□□□□ -0.78
LIMCH1-218ENST00000513024 SPECC1LQ69YQ0 1117 aa10.19□□□□□ -0.78
LIMCH1-218ENST00000513024 KIF6Q6ZMV9 814 aa10.19□□□□□ -0.78
LIMCH1-218ENST00000513024 CCDC43Q96MW1 224 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-218ENST00000513024 DHX29Q7Z478 1369 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-218ENST00000513024 GOLGA6L9A6NEM1 432 aa10.19□□□□□ -0.78
LIMCH1-218ENST00000513024 GOLIM4O00461 696 aa10.19□□□□□ -0.78
LIMCH1-218ENST00000513024 EPS15P42566 896 aa10.19□□□□□ -0.78
LIMCH1-218ENST00000513024 RNF123Q5XPI4 1314 aa10.19□□□□□ -0.78
LIMCH1-218ENST00000513024 PPP2R1AP30153 589 aa10.19□□□□□ -0.78
LIMCH1-218ENST00000513024 GCC1Q96CN9 775 aa10.19□□□□□ -0.78
LIMCH1-218ENST00000513024 RSPH14Q9UHP6 348 aa10.19□□□□□ -0.78
LIMCH1-218ENST00000513024 NOB1Q9ULX3 412 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-218ENST00000513024 A0A1B0GUL7 405 aa10.19□□□□□ -0.78
LIMCH1-218ENST00000513024 ME1P48163 572 aa10.19□□□□□ -0.78
LIMCH1-218ENST00000513024 RSRC1Q96IZ7 334 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-218ENST00000513024 CCDC94Q9BW85 323 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-218ENST00000513024 KIF3CO14782 793 aa10.18□□□□□ -0.78
LIMCH1-218ENST00000513024 CBFA2T2O43439 604 aa10.18□□□□□ -0.78
LIMCH1-218ENST00000513024 KRT85P78386 507 aa10.18□□□□□ -0.78
LIMCH1-218ENST00000513024 C10orf67Q8IYJ2 551 aa10.18□□□□□ -0.78
LIMCH1-218ENST00000513024 BEGAINQ9BUH8 593 aa10.18□□□□□ -0.78
LIMCH1-218ENST00000513024 TEX14Q8IWB6 1497 aa10.18□□□□□ -0.78
LIMCH1-218ENST00000513024 ARHGEF11O15085 1522 aa10.18□□□□□ -0.78
LIMCH1-218ENST00000513024 NAA25Q14CX7 972 aa10.18□□□□□ -0.78
LIMCH1-218ENST00000513024 PLEKHO1Q53GL0 409 aaPredicted RBP10.18□□□□□ -0.78
LIMCH1-218ENST00000513024 GIGYF2Q6Y7W6 1299 aaKnown RBP10.18□□□□□ -0.78
LIMCH1-218ENST00000513024 TCHPQ9BT92 498 aa10.18□□□□□ -0.78
LIMCH1-218ENST00000513024 CIZ1Q9ULV3 898 aaPredicted RBP10.18□□□□□ -0.78
LIMCH1-218ENST00000513024 MTMR7Q9Y216 660 aa10.18□□□□□ -0.78
LIMCH1-218ENST00000513024 TARBP1Q13395 1621 aaKnown RBP10.18□□□□□ -0.78
LIMCH1-218ENST00000513024 ANKRD50Q9ULJ7 1429 aa10.18□□□□□ -0.78
LIMCH1-218ENST00000513024 NINLQ9Y2I6 1382 aa10.18□□□□□ -0.78
LIMCH1-218ENST00000513024 ZFP91Q96JP5 570 aaPredicted RBP10.18□□□□□ -0.78
LIMCH1-218ENST00000513024 ABTB2Q8N961 1025 aa10.18□□□□□ -0.78
LIMCH1-218ENST00000513024 KDM6BO15054 1643 aa10.17□□□□□ -0.78
LIMCH1-218ENST00000513024 URI1O94763 535 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-218ENST00000513024 ARHGAP29Q52LW3 1261 aa10.17□□□□□ -0.78
LIMCH1-218ENST00000513024 LARP1BQ659C4 914 aaKnown RBP10.17□□□□□ -0.78
LIMCH1-218ENST00000513024 CCDC148Q8NFR7 591 aa10.17□□□□□ -0.78
LIMCH1-218ENST00000513024 TMOD2Q9NZR1 351 aa10.17□□□□□ -0.78
LIMCH1-218ENST00000513024 POTEB2H3BUK9 544 aa10.17□□□□□ -0.78
LIMCH1-218ENST00000513024 GNAI3P08754 354 aa10.17□□□□□ -0.78
LIMCH1-218ENST00000513024 IQGAP2Q13576 1575 aa10.17□□□□□ -0.78
LIMCH1-218ENST00000513024 RIC3Q7Z5B4 369 aa10.17□□□□□ -0.78
LIMCH1-218ENST00000513024 FBF1Q8TES7 1133 aa10.17□□□□□ -0.78
LIMCH1-218ENST00000513024 SPG7Q9UQ90 795 aa10.17□□□□□ -0.78
LIMCH1-218ENST00000513024 ZNF608Q9ULD9 1512 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-218ENST00000513024 STAMBPO95630 424 aa10.17□□□□□ -0.78
LIMCH1-218ENST00000513024 KIF5BP33176 963 aa10.17□□□□□ -0.78
LIMCH1-218ENST00000513024 MIPOL1Q8TD10 442 aa10.17□□□□□ -0.78
LIMCH1-218ENST00000513024 ZNF396Q96N95 335 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-218ENST00000513024 RBM42Q9BTD8 480 aaKnown RBP10.17□□□□□ -0.78
LIMCH1-218ENST00000513024 CCDC160A6NGH7 325 aa10.16□□□□□ -0.78
LIMCH1-218ENST00000513024 FYB1O15117 783 aa10.16□□□□□ -0.78
LIMCH1-218ENST00000513024 C6orf163Q5TEZ5 329 aa10.16□□□□□ -0.78
LIMCH1-218ENST00000513024 PSMD1Q99460 953 aa10.16□□□□□ -0.78
LIMCH1-218ENST00000513024 CYP46A1Q9Y6A2 500 aa10.16□□□□□ -0.78
LIMCH1-218ENST00000513024 ZFYP08048 801 aaPredicted RBP10.16□□□□□ -0.78
LIMCH1-218ENST00000513024 CADPS2Q86UW7 1296 aa10.16□□□□□ -0.78
LIMCH1-218ENST00000513024 ZNF622Q969S3 477 aaKnown RBP eCLIP10.16□□□□□ -0.78
LIMCH1-218ENST00000513024 ZSCAN12O43309 604 aa10.16□□□□□ -0.78
LIMCH1-218ENST00000513024 MYCBPQ99417 103 aaPredicted RBP10.16□□□□□ -0.78
LIMCH1-218ENST00000513024 MAGEC2Q9UBF1 373 aaPredicted RBP10.16□□□□□ -0.78
LIMCH1-218ENST00000513024 TWISTNBQ3B726 338 aaPredicted RBP10.16□□□□□ -0.78
LIMCH1-218ENST00000513024 ZNF710Q8N1W2 664 aa10.16□□□□□ -0.78
LIMCH1-218ENST00000513024 TROQ12816 1431 aaPredicted RBP10.15□□□□□ -0.78
LIMCH1-218ENST00000513024 CCDC6Q16204 474 aa10.15□□□□□ -0.78
LIMCH1-218ENST00000513024 DNAJC5Q9H3Z4 198 aa10.15□□□□□ -0.78
LIMCH1-218ENST00000513024 BRMS1Q9HCU9 246 aa10.15□□□□□ -0.78
LIMCH1-218ENST00000513024 XBP1P17861 261 aa10.15□□□□□ -0.78
LIMCH1-218ENST00000513024 LRCH2Q5VUJ6 765 aa10.15□□□□□ -0.78
LIMCH1-218ENST00000513024 CHD1LQ86WJ1 897 aa10.15□□□□□ -0.78
LIMCH1-218ENST00000513024 NUP62CLQ9H1M0 184 aa10.15□□□□□ -0.78
LIMCH1-218ENST00000513024 MAP4K4O95819 1239 aaPredicted RBP10.15□□□□□ -0.78
LIMCH1-218ENST00000513024 PRKAR2BP31323 418 aa10.15□□□□□ -0.79
LIMCH1-218ENST00000513024 AP1ARQ63HQ0 302 aa10.15□□□□□ -0.79
LIMCH1-218ENST00000513024 SAMD1Q6SPF0 538 aaPredicted RBP10.15□□□□□ -0.79
LIMCH1-218ENST00000513024 CABP2Q9NPB3 220 aa10.15□□□□□ -0.79
LIMCH1-218ENST00000513024 SFPQP23246 707 aaKnown RBP eCLIP10.14□□□□□ -0.79
LIMCH1-218ENST00000513024 SEPT14Q6ZU15 432 aa10.14□□□□□ -0.79
LIMCH1-218ENST00000513024 PAF1Q8N7H5 531 aa10.14□□□□□ -0.79
LIMCH1-218ENST00000513024 SPATA32Q96LK8 384 aa10.14□□□□□ -0.79
LIMCH1-218ENST00000513024 MVPQ14764 893 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-218ENST00000513024 ATF7IPQ6VMQ6 1270 aa10.14□□□□□ -0.79
LIMCH1-218ENST00000513024 FMNL3Q8IVF7 1028 aa10.14□□□□□ -0.79
LIMCH1-218ENST00000513024 CEP57L1Q8IYX8 460 aa10.14□□□□□ -0.79
LIMCH1-218ENST00000513024 CCDC113Q9H0I3 377 aa10.14□□□□□ -0.79
LIMCH1-218ENST00000513024 EBAG9O00559 213 aa10.14□□□□□ -0.79
LIMCH1-218ENST00000513024 EPB41L2O43491 1005 aaKnown RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms