RNA–Protein interactions for RNA: ENST00000512027.1

DDX41-213, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-213ENST00000512027 ITPK1Q13572 414 aa22.17■■□□□ 1.14
DDX41-213ENST00000512027 AKAP4Q5JQC9 854 aa22.17■■□□□ 1.14
DDX41-213ENST00000512027 AMIGO3Q86WK7 504 aa22.17■■□□□ 1.14
DDX41-213ENST00000512027 LINC00116Q8NCU8 138 aa22.17■■□□□ 1.14
DDX41-213ENST00000512027 LGR6Q9HBX8 967 aa22.17■■□□□ 1.14
DDX41-213ENST00000512027 NFATC2IPQ8NCF5 419 aa22.16■■□□□ 1.14
DDX41-213ENST00000512027 SLC4A9Q96Q91 983 aa22.16■■□□□ 1.14
DDX41-213ENST00000512027 SGIP1Q9BQI5 828 aa22.16■■□□□ 1.14
DDX41-213ENST00000512027 COL5A3P25940 1745 aaPredicted RBP22.16■■□□□ 1.14
DDX41-213ENST00000512027 MSH5O43196 834 aa22.15■■□□□ 1.14
DDX41-213ENST00000512027 ATP6V1AP38606 617 aa22.15■■□□□ 1.14
DDX41-213ENST00000512027 COL23A1Q86Y22 540 aaPredicted RBP22.15■■□□□ 1.14
DDX41-213ENST00000512027 RBM42Q9BTD8 480 aaKnown RBP22.15■■□□□ 1.14
DDX41-213ENST00000512027 MRC1P22897 1456 aa22.14■■□□□ 1.13
DDX41-213ENST00000512027 ZNF831Q5JPB2 1677 aa22.14■■□□□ 1.13
DDX41-213ENST00000512027 AK7Q96M32 723 aa22.13■■□□□ 1.13
DDX41-213ENST00000512027 RSPH6AQ9H0K4 717 aa22.13■■□□□ 1.13
DDX41-213ENST00000512027 TJP1Q07157 1748 aa22.13■■□□□ 1.13
DDX41-213ENST00000512027 RNMTO43148 476 aaKnown RBP22.12■■□□□ 1.13
DDX41-213ENST00000512027 PHF14O94880 888 aa22.12■■□□□ 1.13
DDX41-213ENST00000512027 PRKAR2BP31323 418 aa22.12■■□□□ 1.13
DDX41-213ENST00000512027 U2AF1L5P0DN76 240 aaPredicted RBP22.11■■□□□ 1.13
DDX41-213ENST00000512027 U2AF1Q01081 240 aaKnown RBP eCLIP22.11■■□□□ 1.13
DDX41-213ENST00000512027 MSL1Q68DK7 614 aa22.11■■□□□ 1.13
DDX41-213ENST00000512027 PHACTR3Q96KR7 559 aa22.11■■□□□ 1.13
DDX41-213ENST00000512027 PTCD1O75127 700 aaKnown RBP22.1■■□□□ 1.13
DDX41-213ENST00000512027 SLC16A10Q8TF71 515 aa22.1■■□□□ 1.13
DDX41-213ENST00000512027 SLC52A2Q9HAB3 445 aa22.1■■□□□ 1.13
DDX41-213ENST00000512027 NUDCQ9Y266 331 aa22.1■■□□□ 1.13
DDX41-213ENST00000512027 MYH14Q7Z406 1995 aaKnown RBP22.09■■□□□ 1.13
DDX41-213ENST00000512027 SIPA1L3O60292 1781 aaPredicted RBP22.09■■□□□ 1.13
DDX41-213ENST00000512027 MAP3K5Q99683 1374 aa22.09■■□□□ 1.13
DDX41-213ENST00000512027 GNPATO15228 680 aa22.08■■□□□ 1.13
DDX41-213ENST00000512027 ARXQ96QS3 562 aa22.08■■□□□ 1.13
DDX41-213ENST00000512027 FHDC1Q9C0D6 1143 aaPredicted RBP22.08■■□□□ 1.13
DDX41-213ENST00000512027 CICQ96RK0 1608 aaPredicted RBP22.07■■□□□ 1.12
DDX41-213ENST00000512027 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.07■■□□□ 1.12
DDX41-213ENST00000512027 SLC39A6Q13433 755 aa22.07■■□□□ 1.12
DDX41-213ENST00000512027 GAS2L2Q8NHY3 880 aa22.06■■□□□ 1.12
DDX41-213ENST00000512027 UBR2Q8IWV8 1755 aa22.06■■□□□ 1.12
DDX41-213ENST00000512027 KCPQ6ZWJ8 1503 aa22.06■■□□□ 1.12
DDX41-213ENST00000512027 KLHL34Q8N239 644 aa22.05■■□□□ 1.12
DDX41-213ENST00000512027 C4AP0C0L4 1744 aa22.04■■□□□ 1.12
DDX41-213ENST00000512027 GNAT3A8MTJ3 354 aa22.04■■□□□ 1.12
DDX41-213ENST00000512027 POLD1P28340 1107 aa22.04■■□□□ 1.12
DDX41-213ENST00000512027 IL17REQ8NFR9 667 aa22.04■■□□□ 1.12
DDX41-213ENST00000512027 DLG5Q8TDM6 1919 aa22.04■■□□□ 1.12
DDX41-213ENST00000512027 FLAD1Q8NFF5 587 aa22.03■■□□□ 1.12
DDX41-213ENST00000512027 SYT17Q9BSW7 474 aa22.03■■□□□ 1.12
DDX41-213ENST00000512027 HMGB2P26583 209 aaKnown RBP22.02■■□□□ 1.12
DDX41-213ENST00000512027 SSFA2P28290 1259 aa22.02■■□□□ 1.12
DDX41-213ENST00000512027 ZEB1P37275 1124 aaPredicted RBP22.02■■□□□ 1.12
DDX41-213ENST00000512027 FCHSD2O94868 740 aa22.01■■□□□ 1.11
DDX41-213ENST00000512027 RALBP1Q15311 655 aa22.01■■□□□ 1.11
DDX41-213ENST00000512027 CNTNAP4Q9C0A0 1308 aa22.01■■□□□ 1.11
DDX41-213ENST00000512027 DNAJC10Q8IXB1 793 aa22■■□□□ 1.11
DDX41-213ENST00000512027 CRKLP46109 303 aaKnown RBP21.99■■□□□ 1.11
DDX41-213ENST00000512027 TEFQ10587 303 aa21.99■■□□□ 1.11
DDX41-213ENST00000512027 RTCBQ9Y3I0 505 aaKnown RBP21.98■■□□□ 1.11
DDX41-213ENST00000512027 CEMIPQ8WUJ3 1361 aa21.98■■□□□ 1.11
DDX41-213ENST00000512027 DCTN1Q14203 1278 aa21.97■■□□□ 1.11
DDX41-213ENST00000512027 RC3H1Q5TC82 1133 aaKnown RBP21.97■■□□□ 1.11
DDX41-213ENST00000512027 MCM10Q7L590 875 aa21.97■■□□□ 1.11
DDX41-213ENST00000512027 MYBBP1AQ9BQG0 1328 aaKnown RBP21.96■■□□□ 1.11
DDX41-213ENST00000512027 RPS6KA4O75676 772 aa21.95■■□□□ 1.1
DDX41-213ENST00000512027 TRAPPC3LQ5T215 181 aa21.95■■□□□ 1.1
DDX41-213ENST00000512027 NLGN2Q8NFZ4 835 aa21.95■■□□□ 1.1
DDX41-213ENST00000512027 ARHGEF1Q92888 912 aaKnown RBP21.95■■□□□ 1.1
DDX41-213ENST00000512027 TTC5Q8N0Z6 440 aa21.94■■□□□ 1.1
DDX41-213ENST00000512027 PLEKHF1Q96S99 279 aa21.94■■□□□ 1.1
DDX41-213ENST00000512027 KCNQ3O43525 872 aa21.93■■□□□ 1.1
DDX41-213ENST00000512027 INTS5Q6P9B9 1019 aaKnown RBP21.93■■□□□ 1.1
DDX41-213ENST00000512027 CYP19A1P11511 503 aaPredicted RBP21.92■■□□□ 1.1
DDX41-213ENST00000512027 ZNF790Q6PG37 636 aa21.92■■□□□ 1.1
DDX41-213ENST00000512027 RTF1Q92541 710 aaKnown RBP21.92■■□□□ 1.1
DDX41-213ENST00000512027 ZNF496Q96IT1 587 aaPredicted RBP21.92■■□□□ 1.1
DDX41-213ENST00000512027 CCDC87Q9NVE4 849 aa21.91■■□□□ 1.1
DDX41-213ENST00000512027 SRP68Q9UHB9 627 aaKnown RBP21.91■■□□□ 1.1
DDX41-213ENST00000512027 UTRNP46939 3433 aa21.9■■□□□ 1.1
DDX41-213ENST00000512027 RFC4P35249 363 aa21.9■■□□□ 1.1
DDX41-213ENST00000512027 PRKRIP1Q9H875 184 aaPredicted RBP21.9■■□□□ 1.1
DDX41-213ENST00000512027 ZBTB1Q9Y2K1 713 aa21.9■■□□□ 1.1
DDX41-213ENST00000512027 HEG1Q9ULI3 1381 aa21.89■■□□□ 1.1
DDX41-213ENST00000512027 BTBD11A6QL63 1104 aa21.89■■□□□ 1.09
DDX41-213ENST00000512027 ADRA2BP18089 450 aa21.89■■□□□ 1.09
DDX41-213ENST00000512027 GOLGB1Q14789 3259 aaKnown RBP21.89■■□□□ 1.09
DDX41-213ENST00000512027 DCAF8L1A6NGE4 600 aa21.88■■□□□ 1.09
DDX41-213ENST00000512027 NEFMP07197 916 aa21.88■■□□□ 1.09
DDX41-213ENST00000512027 MMP10P09238 476 aa21.88■■□□□ 1.09
DDX41-213ENST00000512027 GYS1P13807 737 aa21.88■■□□□ 1.09
DDX41-213ENST00000512027 VSIG10Q8N0Z9 540 aa21.88■■□□□ 1.09
DDX41-213ENST00000512027 SOS1Q07889 1333 aaPredicted RBP21.87■■□□□ 1.09
DDX41-213ENST00000512027 MAPK8IP3Q9UPT6 1336 aa21.87■■□□□ 1.09
DDX41-213ENST00000512027 NFE2L2Q16236 605 aa21.87■■□□□ 1.09
DDX41-213ENST00000512027 THUMPD2Q9BTF0 503 aaKnown RBP21.87■■□□□ 1.09
DDX41-213ENST00000512027 PELP1Q8IZL8 1130 aaKnown RBP21.86■■□□□ 1.09
DDX41-213ENST00000512027 KDM3BQ7LBC6 1761 aa21.86■■□□□ 1.09
DDX41-213ENST00000512027 COL15A1P39059 1388 aa21.86■■□□□ 1.09
DDX41-213ENST00000512027 USP42Q9H9J4 1324 aaKnown RBP21.85■■□□□ 1.09
DDX41-213ENST00000512027 HTATSF1O43719 755 aaKnown RBP21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms