RNA–Protein interactions for RNA: ENST00000511424.5

LIMCH1-212, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-212ENST00000511424 TRERF1Q96PN7 1200 aa5.45□□□□□ -1.54
LIMCH1-212ENST00000511424 RBM19Q9Y4C8 960 aaKnown RBP5.45□□□□□ -1.54
LIMCH1-212ENST00000511424 USP17L5A8MUK1 530 aa5.44□□□□□ -1.54
LIMCH1-212ENST00000511424 F11P03951 625 aa5.44□□□□□ -1.54
LIMCH1-212ENST00000511424 INHAP05111 366 aa5.44□□□□□ -1.54
LIMCH1-212ENST00000511424 GTF2IP78347 998 aa5.44□□□□□ -1.54
LIMCH1-212ENST00000511424 WDR44Q5JSH3 913 aa5.44□□□□□ -1.54
LIMCH1-212ENST00000511424 TRIM22Q8IYM9 498 aa5.44□□□□□ -1.54
LIMCH1-212ENST00000511424 RHBDD1Q8TEB9 315 aa5.44□□□□□ -1.54
LIMCH1-212ENST00000511424 GTPBP3Q969Y2 492 aaKnown RBP5.44□□□□□ -1.54
LIMCH1-212ENST00000511424 CALR3Q96L12 384 aaKnown RBP5.44□□□□□ -1.54
LIMCH1-212ENST00000511424 CUEDC1Q9NWM3 386 aaPredicted RBP5.44□□□□□ -1.54
LIMCH1-212ENST00000511424 CHIC2Q9UKJ5 165 aa5.44□□□□□ -1.54
LIMCH1-212ENST00000511424 A0A1B0GTH6 734 aa5.43□□□□□ -1.54
LIMCH1-212ENST00000511424 SPATA31C2B4DYI2 1134 aa5.43□□□□□ -1.54
LIMCH1-212ENST00000511424 LZTS3O60299 673 aaPredicted RBP5.43□□□□□ -1.54
LIMCH1-212ENST00000511424 PLA2G4AP47712 749 aa5.43□□□□□ -1.54
LIMCH1-212ENST00000511424 DBN1Q16643 649 aa5.43□□□□□ -1.54
LIMCH1-212ENST00000511424 RNFT1Q5M7Z0 435 aa5.43□□□□□ -1.54
LIMCH1-212ENST00000511424 TRIM50Q86XT4 487 aa5.43□□□□□ -1.54
LIMCH1-212ENST00000511424 SVOPQ8N4V2 548 aa5.43□□□□□ -1.54
LIMCH1-212ENST00000511424 NFATC2IPQ8NCF5 419 aa5.43□□□□□ -1.54
LIMCH1-212ENST00000511424 GLMNQ92990 594 aa5.43□□□□□ -1.54
LIMCH1-212ENST00000511424 ZNF837Q96EG3 531 aaPredicted RBP5.43□□□□□ -1.54
LIMCH1-212ENST00000511424 GMCL1Q96IK5 515 aa5.43□□□□□ -1.54
LIMCH1-212ENST00000511424 NUCKS1Q9H1E3 243 aaKnown RBP5.43□□□□□ -1.54
LIMCH1-212ENST00000511424 USP17L3A6NCW0 530 aa5.42□□□□□ -1.54
LIMCH1-212ENST00000511424 USP17L4A6NCW7 530 aa5.42□□□□□ -1.54
LIMCH1-212ENST00000511424 BACH1O14867 736 aa5.42□□□□□ -1.54
LIMCH1-212ENST00000511424 SCNN1DP51172 638 aa5.42□□□□□ -1.54
LIMCH1-212ENST00000511424 C4orf17Q53FE4 359 aa5.42□□□□□ -1.54
LIMCH1-212ENST00000511424 EFHC2Q5JST6 749 aa5.42□□□□□ -1.54
LIMCH1-212ENST00000511424 USP17L2Q6R6M4 530 aa5.42□□□□□ -1.54
LIMCH1-212ENST00000511424 TBC1D9Q6ZT07 1266 aa5.42□□□□□ -1.54
LIMCH1-212ENST00000511424 USP17L1Q7RTZ2 530 aa5.42□□□□□ -1.54
LIMCH1-212ENST00000511424 PPARGC1BQ86YN6 1023 aaKnown RBP5.42□□□□□ -1.54
LIMCH1-212ENST00000511424 NIFKQ9BYG3 293 aaKnown RBP5.42□□□□□ -1.54
LIMCH1-212ENST00000511424 FHDC1Q9C0D6 1143 aaPredicted RBP5.42□□□□□ -1.54
LIMCH1-212ENST00000511424 RUBCNLQ9H714 662 aa5.42□□□□□ -1.54
LIMCH1-212ENST00000511424 CABP1Q9NZU7 370 aa5.42□□□□□ -1.54
LIMCH1-212ENST00000511424 ATP9BO43861 1147 aa5.41□□□□□ -1.54
LIMCH1-212ENST00000511424 ATP1A2P50993 1020 aa5.41□□□□□ -1.54
LIMCH1-212ENST00000511424 SMTNP53814 917 aa5.41□□□□□ -1.54
LIMCH1-212ENST00000511424 KRT76Q01546 638 aa5.41□□□□□ -1.54
LIMCH1-212ENST00000511424 MAP3K10Q02779 954 aa5.41□□□□□ -1.54
LIMCH1-212ENST00000511424 NBPF1Q3BBV0 1214 aa5.41□□□□□ -1.54
LIMCH1-212ENST00000511424 ARSJQ5FYB0 599 aaPredicted RBP5.41□□□□□ -1.54
LIMCH1-212ENST00000511424 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.41□□□□□ -1.54
LIMCH1-212ENST00000511424 ADAMTS19Q8TE59 1207 aa5.41□□□□□ -1.54
LIMCH1-212ENST00000511424 NSFL1CQ9UNZ2 370 aaKnown RBP5.41□□□□□ -1.54
LIMCH1-212ENST00000511424 A6NJY4 79 aa5.4□□□□□ -1.54
LIMCH1-212ENST00000511424 ADAMTS2O95450 1211 aa5.4□□□□□ -1.54
LIMCH1-212ENST00000511424 MX2P20592 715 aa5.4□□□□□ -1.54
LIMCH1-212ENST00000511424 MSX1P28360 303 aa5.4□□□□□ -1.54
LIMCH1-212ENST00000511424 TPCN2Q8NHX9 752 aa5.4□□□□□ -1.54
LIMCH1-212ENST00000511424 ZNF594Q96JF6 807 aaPredicted RBP5.4□□□□□ -1.54
LIMCH1-212ENST00000511424 MKRN1Q9UHC7 482 aaKnown RBP5.4□□□□□ -1.54
LIMCH1-212ENST00000511424 PHF24Q9UPV7 400 aa5.4□□□□□ -1.54
LIMCH1-212ENST00000511424 PCDHGA11Q9Y5H2 935 aa5.4□□□□□ -1.54
LIMCH1-212ENST00000511424 HRH3Q9Y5N1 445 aa5.4□□□□□ -1.54
LIMCH1-212ENST00000511424 GJA3Q9Y6H8 435 aa5.4□□□□□ -1.54
LIMCH1-212ENST00000511424 TMEM229AB2RXF0 380 aa5.39□□□□□ -1.55
LIMCH1-212ENST00000511424 TATP17735 454 aaPredicted RBP5.39□□□□□ -1.55
LIMCH1-212ENST00000511424 CCDC102BQ68D86 513 aa5.39□□□□□ -1.55
LIMCH1-212ENST00000511424 BICDL1Q6ZP65 573 aa5.39□□□□□ -1.55
LIMCH1-212ENST00000511424 OGFOD1Q8N543 542 aa5.39□□□□□ -1.55
LIMCH1-212ENST00000511424 MBIPQ9NS73 344 aa5.39□□□□□ -1.55
LIMCH1-212ENST00000511424 DNAAF2Q9NVR5 837 aaKnown RBP5.39□□□□□ -1.55
LIMCH1-212ENST00000511424 ZNF358Q9NW07 568 aa5.39□□□□□ -1.55
LIMCH1-212ENST00000511424 TFIP11Q9UBB9 837 aaKnown RBP5.39□□□□□ -1.55
LIMCH1-212ENST00000511424 ZNF232Q9UNY5 417 aa5.39□□□□□ -1.55
LIMCH1-212ENST00000511424 CHMP3Q9Y3E7 222 aa5.39□□□□□ -1.55
LIMCH1-212ENST00000511424 PARP3Q9Y6F1 533 aa5.39□□□□□ -1.55
LIMCH1-212ENST00000511424 A6NJR5 290 aa5.38□□□□□ -1.55
LIMCH1-212ENST00000511424 RASA1P20936 1047 aa5.38□□□□□ -1.55
LIMCH1-212ENST00000511424 SRSF11Q05519 484 aaKnown RBP5.38□□□□□ -1.55
LIMCH1-212ENST00000511424 UCN2Q96RP3 112 aa5.38□□□□□ -1.55
LIMCH1-212ENST00000511424 NEUROD4Q9HD90 331 aa5.38□□□□□ -1.55
LIMCH1-212ENST00000511424 ZNF777Q9ULD5 760 aaPredicted RBP5.38□□□□□ -1.55
LIMCH1-212ENST00000511424 CDK2AP1O14519 115 aa5.37□□□□□ -1.55
LIMCH1-212ENST00000511424 MARSP56192 900 aaKnown RBP5.37□□□□□ -1.55
LIMCH1-212ENST00000511424 GAS6Q14393 721 aa5.37□□□□□ -1.55
LIMCH1-212ENST00000511424 TBCELQ5QJ74 424 aa5.37□□□□□ -1.55
LIMCH1-212ENST00000511424 LARP1Q6PKG0 1096 aaKnown RBP5.37□□□□□ -1.55
LIMCH1-212ENST00000511424 PLEKHM2Q8IWE5 1019 aa5.37□□□□□ -1.55
LIMCH1-212ENST00000511424 TNS4Q8IZW8 715 aa5.37□□□□□ -1.55
LIMCH1-212ENST00000511424 FNBP4Q8N3X1 1017 aaPredicted RBP5.37□□□□□ -1.55
LIMCH1-212ENST00000511424 NEDD1Q8NHV4 660 aa5.37□□□□□ -1.55
LIMCH1-212ENST00000511424 ENAMQ9NRM1 1142 aa5.37□□□□□ -1.55
LIMCH1-212ENST00000511424 IGF1RP08069 1367 aa5.37□□□□□ -1.55
LIMCH1-212ENST00000511424 PALM3A6NDB9 673 aaPredicted RBP5.36□□□□□ -1.55
LIMCH1-212ENST00000511424 LORP23490 312 aaPredicted RBP5.36□□□□□ -1.55
LIMCH1-212ENST00000511424 LMOD1P29536 600 aaPredicted RBP5.36□□□□□ -1.55
LIMCH1-212ENST00000511424 CLDN10P78369 228 aa5.36□□□□□ -1.55
LIMCH1-212ENST00000511424 LBRQ14739 615 aaKnown RBP5.36□□□□□ -1.55
LIMCH1-212ENST00000511424 FIGNL1Q6PIW4 674 aa5.36□□□□□ -1.55
LIMCH1-212ENST00000511424 LARGE2Q8N3Y3 721 aa5.36□□□□□ -1.55
LIMCH1-212ENST00000511424 C1orf216Q8TAB5 229 aa5.36□□□□□ -1.55
LIMCH1-212ENST00000511424 WHAMMQ8TF30 809 aa5.36□□□□□ -1.55
LIMCH1-212ENST00000511424 ABHD17AQ96GS6 310 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms