RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 XIRP1Q702N8 1843 aaKnown RBP12.21□□□□□ -0.45
USP53-207ENST00000510852 LARGE2Q8N3Y3 721 aa12.21□□□□□ -0.46
USP53-207ENST00000510852 ARHGEF1Q92888 912 aaKnown RBP12.21□□□□□ -0.46
USP53-207ENST00000510852 ACEP12821 1306 aa12.21□□□□□ -0.46
USP53-207ENST00000510852 CPSF1Q10570 1443 aaKnown RBP12.21□□□□□ -0.46
USP53-207ENST00000510852 DHX16O60231 1041 aaKnown RBP12.2□□□□□ -0.46
USP53-207ENST00000510852 PSME1Q06323 249 aa12.2□□□□□ -0.46
USP53-207ENST00000510852 ESCO1Q5FWF5 840 aa12.2□□□□□ -0.46
USP53-207ENST00000510852 C1orf167Q5SNV9 1468 aa12.2□□□□□ -0.46
USP53-207ENST00000510852 MST1RQ04912 1400 aa12.19□□□□□ -0.46
USP53-207ENST00000510852 KTN1Q86UP2 1357 aaKnown RBP12.19□□□□□ -0.46
USP53-207ENST00000510852 ZNF16P17020 682 aaPredicted RBP12.19□□□□□ -0.46
USP53-207ENST00000510852 ZC3H6P61129 1189 aaKnown RBP12.19□□□□□ -0.46
USP53-207ENST00000510852 CC2D1BQ5T0F9 858 aaKnown RBP12.19□□□□□ -0.46
USP53-207ENST00000510852 NGDNQ8NEJ9 315 aaKnown RBP12.19□□□□□ -0.46
USP53-207ENST00000510852 PRKRIP1Q9H875 184 aaPredicted RBP12.19□□□□□ -0.46
USP53-207ENST00000510852 PHF8Q9UPP1 1060 aa12.19□□□□□ -0.46
USP53-207ENST00000510852 NAALADL2Q58DX5 795 aa12.19□□□□□ -0.46
USP53-207ENST00000510852 ORAI2Q96SN7 254 aa12.19□□□□□ -0.46
USP53-207ENST00000510852 RGPD8O14715 1765 aaPredicted RBP12.18□□□□□ -0.46
USP53-207ENST00000510852 POLR3AO14802 1390 aaPredicted RBP12.18□□□□□ -0.46
USP53-207ENST00000510852 BDNFP23560 247 aa12.18□□□□□ -0.46
USP53-207ENST00000510852 ITSN1Q15811 1721 aa12.18□□□□□ -0.46
USP53-207ENST00000510852 GOLGA6CA6NDK9 693 aa12.18□□□□□ -0.46
USP53-207ENST00000510852 GOLGA6BA6NDN3 693 aa12.18□□□□□ -0.46
USP53-207ENST00000510852 ZNF500O60304 480 aaPredicted RBP12.18□□□□□ -0.46
USP53-207ENST00000510852 APPP05067 770 aa12.18□□□□□ -0.46
USP53-207ENST00000510852 GOLGA6DP0CG33 693 aa12.18□□□□□ -0.46
USP53-207ENST00000510852 SEMA3FQ13275 785 aa12.18□□□□□ -0.46
USP53-207ENST00000510852 GNL3LQ9NVN8 582 aaKnown RBP12.18□□□□□ -0.46
USP53-207ENST00000510852 GOLGA6AQ9NYA3 693 aa12.18□□□□□ -0.46
USP53-207ENST00000510852 NPC1L1Q9UHC9 1359 aa12.17□□□□□ -0.46
USP53-207ENST00000510852 ERBB3P21860 1342 aa12.17□□□□□ -0.46
USP53-207ENST00000510852 CGNL1Q0VF96 1302 aa12.17□□□□□ -0.46
USP53-207ENST00000510852 PLCD3Q8N3E9 789 aa12.17□□□□□ -0.46
USP53-207ENST00000510852 NRDCO43847 1150 aa12.17□□□□□ -0.46
USP53-207ENST00000510852 C11orf96Q7Z7L8 435 aa12.17□□□□□ -0.46
USP53-207ENST00000510852 CREBRFQ8IUR6 639 aa12.17□□□□□ -0.46
USP53-207ENST00000510852 EGFL6Q8IUX8 553 aa12.17□□□□□ -0.46
USP53-207ENST00000510852 CEP120Q8N960 986 aa12.17□□□□□ -0.46
USP53-207ENST00000510852 EDC4Q6P2E9 1401 aaKnown RBP12.17□□□□□ -0.46
USP53-207ENST00000510852 GYS2P54840 703 aa12.16□□□□□ -0.46
USP53-207ENST00000510852 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.16□□□□□ -0.46
USP53-207ENST00000510852 EIF3JO75822 258 aaKnown RBP12.16□□□□□ -0.46
USP53-207ENST00000510852 USP6P35125 1406 aa12.16□□□□□ -0.46
USP53-207ENST00000510852 ZKSCAN2Q63HK3 967 aa12.16□□□□□ -0.46
USP53-207ENST00000510852 OTUD6BQ8N6M0 293 aa12.16□□□□□ -0.46
USP53-207ENST00000510852 ZNF830Q96NB3 372 aaPredicted RBP12.16□□□□□ -0.46
USP53-207ENST00000510852 SLAIN2Q9P270 581 aa12.16□□□□□ -0.46
USP53-207ENST00000510852 ARHGEF10LQ9HCE6 1279 aa12.15□□□□□ -0.46
USP53-207ENST00000510852 CHPF2Q9P2E5 772 aa12.15□□□□□ -0.46
USP53-207ENST00000510852 FYB1O15117 783 aa12.15□□□□□ -0.47
USP53-207ENST00000510852 WDHD1O75717 1129 aaPredicted RBP12.15□□□□□ -0.47
USP53-207ENST00000510852 PSEN1P49768 467 aa12.15□□□□□ -0.47
USP53-207ENST00000510852 CCDC184Q52MB2 194 aa12.15□□□□□ -0.47
USP53-207ENST00000510852 PARD3Q8TEW0 1356 aa12.14□□□□□ -0.47
USP53-207ENST00000510852 TTC21BQ7Z4L5 1316 aa12.14□□□□□ -0.47
USP53-207ENST00000510852 AKAP12Q02952 1782 aa12.14□□□□□ -0.47
USP53-207ENST00000510852 GOLIM4O00461 696 aa12.14□□□□□ -0.47
USP53-207ENST00000510852 FOXO3O43524 673 aa12.14□□□□□ -0.47
USP53-207ENST00000510852 C4orf46Q504U0 113 aa12.14□□□□□ -0.47
USP53-207ENST00000510852 NUB1Q9Y5A7 615 aa12.14□□□□□ -0.47
USP53-207ENST00000510852 COMMD10Q9Y6G5 202 aa12.14□□□□□ -0.47
USP53-207ENST00000510852 SSH2Q76I76 1423 aa12.14□□□□□ -0.47
USP53-207ENST00000510852 MON2Q7Z3U7 1717 aa12.14□□□□□ -0.47
USP53-207ENST00000510852 CSPP1Q1MSJ5 1256 aa12.13□□□□□ -0.47
USP53-207ENST00000510852 DNAJC14Q6Y2X3 702 aaPredicted RBP12.13□□□□□ -0.47
USP53-207ENST00000510852 DDRGK1Q96HY6 314 aa12.13□□□□□ -0.47
USP53-207ENST00000510852 GGNBP2Q9H3C7 697 aa12.13□□□□□ -0.47
USP53-207ENST00000510852 NSD2O96028 1365 aa12.13□□□□□ -0.47
USP53-207ENST00000510852 SCP2P22307 547 aa12.13□□□□□ -0.47
USP53-207ENST00000510852 NME9Q86XW9 330 aa12.13□□□□□ -0.47
USP53-207ENST00000510852 ATL2Q8NHH9 583 aa12.13□□□□□ -0.47
USP53-207ENST00000510852 CCDC85AQ96PX6 553 aaPredicted RBP12.13□□□□□ -0.47
USP53-207ENST00000510852 MKRN4PQ13434 485 aaPredicted RBP12.12□□□□□ -0.47
USP53-207ENST00000510852 BRINP3Q76B58 766 aa12.12□□□□□ -0.47
USP53-207ENST00000510852 DDX46Q7L014 1031 aaKnown RBP12.12□□□□□ -0.47
USP53-207ENST00000510852 MPNDQ8N594 471 aa12.12□□□□□ -0.47
USP53-207ENST00000510852 TMX4Q9H1E5 349 aaPredicted RBP12.12□□□□□ -0.47
USP53-207ENST00000510852 IRX3P78415 501 aaPredicted RBP12.12□□□□□ -0.47
USP53-207ENST00000510852 MORC1Q86VD1 984 aa12.12□□□□□ -0.47
USP53-207ENST00000510852 PPP4CP60510 307 aa12.11□□□□□ -0.47
USP53-207ENST00000510852 TTC21AQ8NDW8 1320 aa12.11□□□□□ -0.47
USP53-207ENST00000510852 KIF1AQ12756 1690 aa12.11□□□□□ -0.47
USP53-207ENST00000510852 NRKQ7Z2Y5 1582 aa12.11□□□□□ -0.47
USP53-207ENST00000510852 XPCQ01831 940 aaPredicted RBP12.11□□□□□ -0.47
USP53-207ENST00000510852 AMOTL1Q8IY63 956 aa12.11□□□□□ -0.47
USP53-207ENST00000510852 ZRANB1Q9UGI0 708 aa12.11□□□□□ -0.47
USP53-207ENST00000510852 FRMD4BQ9Y2L6 1034 aa12.11□□□□□ -0.47
USP53-207ENST00000510852 MYBBP1AQ9BQG0 1328 aaKnown RBP12.11□□□□□ -0.47
USP53-207ENST00000510852 BRD4O60885 1362 aaPredicted RBP12.11□□□□□ -0.47
USP53-207ENST00000510852 hCG_2014768A0A024R1R8 64 aa12.1□□□□□ -0.47
USP53-207ENST00000510852 PAK3O75914 559 aaPredicted RBP12.1□□□□□ -0.47
USP53-207ENST00000510852 IGBP1P78318 339 aa12.1□□□□□ -0.47
USP53-207ENST00000510852 KRT28Q7Z3Y7 464 aa12.1□□□□□ -0.47
USP53-207ENST00000510852 DDX17Q92841 729 aaKnown RBP12.1□□□□□ -0.47
USP53-207ENST00000510852 CARD10Q9BWT7 1032 aa12.1□□□□□ -0.47
USP53-207ENST00000510852 MSH5O43196 834 aa12.1□□□□□ -0.47
USP53-207ENST00000510852 RRP9O43818 475 aaKnown RBP12.1□□□□□ -0.47
USP53-207ENST00000510852 STK10O94804 968 aaKnown RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms