RNA–Protein interactions for RNA: ENST00000509857.5

TRAPPC11-206, Transcript of trafficking protein particle complex 11, humanhuman

TSL 4

Gene TRAPPC11, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC11-206ENST00000509857 USP17L20D6RJB6 530 aa13.23□□□□□ -0.29
TRAPPC11-206ENST00000509857 USP17L24Q0WX57 530 aa13.23□□□□□ -0.29
TRAPPC11-206ENST00000509857 CCDC102BQ68D86 513 aa13.23□□□□□ -0.29
TRAPPC11-206ENST00000509857 TPCN2Q8NHX9 752 aa13.23□□□□□ -0.29
TRAPPC11-206ENST00000509857 NLRP3Q96P20 1036 aa13.23□□□□□ -0.29
TRAPPC11-206ENST00000509857 POLMQ9NP87 494 aaPredicted RBP13.23□□□□□ -0.29
TRAPPC11-206ENST00000509857 RNF217Q8TC41 542 aa13.22□□□□□ -0.29
TRAPPC11-206ENST00000509857 SLC4A9Q96Q91 983 aa13.22□□□□□ -0.29
TRAPPC11-206ENST00000509857 ZNF594Q96JF6 807 aaPredicted RBP13.21□□□□□ -0.29
TRAPPC11-206ENST00000509857 FHDC1Q9C0D6 1143 aaPredicted RBP13.21□□□□□ -0.29
TRAPPC11-206ENST00000509857 ZNF358Q9NW07 568 aa13.21□□□□□ -0.29
TRAPPC11-206ENST00000509857 C11orf95C9JLR9 678 aaPredicted RBP13.2□□□□□ -0.3
TRAPPC11-206ENST00000509857 PPP1R15AO75807 674 aaPredicted RBP13.2□□□□□ -0.3
TRAPPC11-206ENST00000509857 ATG7O95352 703 aa13.2□□□□□ -0.3
TRAPPC11-206ENST00000509857 SNRPBP14678 240 aaKnown RBP13.2□□□□□ -0.3
TRAPPC11-206ENST00000509857 ELOAQ14241 798 aaKnown RBP13.2□□□□□ -0.3
TRAPPC11-206ENST00000509857 GRIP2Q9C0E4 1043 aa13.2□□□□□ -0.3
TRAPPC11-206ENST00000509857 DNMT3LQ9UJW3 386 aa13.2□□□□□ -0.3
TRAPPC11-206ENST00000509857 M0R2N6 131 aa13.19□□□□□ -0.3
TRAPPC11-206ENST00000509857 CENPCQ03188 943 aa13.19□□□□□ -0.3
TRAPPC11-206ENST00000509857 CDCA8Q53HL2 280 aa13.19□□□□□ -0.3
TRAPPC11-206ENST00000509857 ANKMY2Q8IV38 441 aa13.19□□□□□ -0.3
TRAPPC11-206ENST00000509857 ARXQ96QS3 562 aa13.19□□□□□ -0.3
TRAPPC11-206ENST00000509857 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.18□□□□□ -0.3
TRAPPC11-206ENST00000509857 BACH1O14867 736 aa13.17□□□□□ -0.3
TRAPPC11-206ENST00000509857 MTFR1Q15390 333 aa13.17□□□□□ -0.3
TRAPPC11-206ENST00000509857 ARID3AQ99856 593 aa13.17□□□□□ -0.3
TRAPPC11-206ENST00000509857 MAN1A2O60476 641 aa13.16□□□□□ -0.3
TRAPPC11-206ENST00000509857 SMTNP53814 917 aa13.16□□□□□ -0.3
TRAPPC11-206ENST00000509857 TLR1Q15399 786 aa13.16□□□□□ -0.3
TRAPPC11-206ENST00000509857 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.16□□□□□ -0.3
TRAPPC11-206ENST00000509857 SPATA31C2B4DYI2 1134 aa13.15□□□□□ -0.3
TRAPPC11-206ENST00000509857 EPHA4P54764 986 aa13.15□□□□□ -0.3
TRAPPC11-206ENST00000509857 SEC13P55735 322 aa13.15□□□□□ -0.3
TRAPPC11-206ENST00000509857 DPYDQ12882 1025 aa13.15□□□□□ -0.3
TRAPPC11-206ENST00000509857 SERTAD1Q9UHV2 236 aa13.15□□□□□ -0.3
TRAPPC11-206ENST00000509857 NOVA2Q9UNW9 492 aaKnown RBP13.15□□□□□ -0.3
TRAPPC11-206ENST00000509857 A6NJY4 79 aa13.14□□□□□ -0.31
TRAPPC11-206ENST00000509857 SLC27A3Q5K4L6 730 aa13.14□□□□□ -0.31
TRAPPC11-206ENST00000509857 ZNF787Q6DD87 383 aa13.14□□□□□ -0.31
TRAPPC11-206ENST00000509857 LYSMD3Q7Z3D4 306 aa13.14□□□□□ -0.31
TRAPPC11-206ENST00000509857 ZMIZ1Q9ULJ6 1067 aa13.14□□□□□ -0.31
TRAPPC11-206ENST00000509857 RBM19Q9Y4C8 960 aaKnown RBP13.14□□□□□ -0.31
TRAPPC11-206ENST00000509857 SOBPA7XYQ1 873 aa13.13□□□□□ -0.31
TRAPPC11-206ENST00000509857 SFI1A8K8P3 1242 aa13.13□□□□□ -0.31
TRAPPC11-206ENST00000509857 PPARGC1BQ86YN6 1023 aaKnown RBP13.13□□□□□ -0.31
TRAPPC11-206ENST00000509857 ZSCAN10Q96SZ4 725 aaPredicted RBP13.13□□□□□ -0.31
TRAPPC11-206ENST00000509857 IQSEC3Q9UPP2 1182 aaPredicted RBP13.13□□□□□ -0.31
TRAPPC11-206ENST00000509857 FIGNL2A6NMB9 653 aa13.12□□□□□ -0.31
TRAPPC11-206ENST00000509857 FOXK2Q01167 660 aa13.11□□□□□ -0.31
TRAPPC11-206ENST00000509857 ZNF295-AS1Q8N0V1 137 aa13.11□□□□□ -0.31
TRAPPC11-206ENST00000509857 SCHIP1Q9P0W5 487 aaPredicted RBP13.11□□□□□ -0.31
TRAPPC11-206ENST00000509857 CDK2AP1O14519 115 aa13.1□□□□□ -0.31
TRAPPC11-206ENST00000509857 WDR44Q5JSH3 913 aa13.1□□□□□ -0.31
TRAPPC11-206ENST00000509857 FAM200AQ8TCP9 573 aa13.1□□□□□ -0.31
TRAPPC11-206ENST00000509857 PRICKLE2Q7Z3G6 844 aa13.09□□□□□ -0.31
TRAPPC11-206ENST00000509857 NBPF15Q8N660 670 aa13.09□□□□□ -0.31
TRAPPC11-206ENST00000509857 TSEN2Q8NCE0 465 aaKnown RBP13.09□□□□□ -0.31
TRAPPC11-206ENST00000509857 STK32AQ8WU08 396 aa13.09□□□□□ -0.31
TRAPPC11-206ENST00000509857 NBPF10Q6P3W6 841 aaKnown RBP13.08□□□□□ -0.32
TRAPPC11-206ENST00000509857 TNS4Q8IZW8 715 aa13.08□□□□□ -0.32
TRAPPC11-206ENST00000509857 RHBDD1Q8TEB9 315 aa13.08□□□□□ -0.32
TRAPPC11-206ENST00000509857 GNASQ5JWF2 1037 aa13.07□□□□□ -0.32
TRAPPC11-206ENST00000509857 TMEM214Q6NUQ4 689 aaKnown RBP13.07□□□□□ -0.32
TRAPPC11-206ENST00000509857 USP3Q9Y6I4 520 aa13.07□□□□□ -0.32
TRAPPC11-206ENST00000509857 ACIN1Q9UKV3 1341 aaKnown RBP13.07□□□□□ -0.32
TRAPPC11-206ENST00000509857 GTF2E1P29083 439 aaPredicted RBP13.06□□□□□ -0.32
TRAPPC11-206ENST00000509857 POU4F2Q12837 409 aa13.06□□□□□ -0.32
TRAPPC11-206ENST00000509857 TAS1R3Q7RTX0 852 aa13.06□□□□□ -0.32
TRAPPC11-206ENST00000509857 SENP3-EIF4A1A0A087X0R7 540 aa13.05□□□□□ -0.32
TRAPPC11-206ENST00000509857 PTSQ03393 145 aa13.05□□□□□ -0.32
TRAPPC11-206ENST00000509857 FAM69CQ0P6D2 419 aa13.05□□□□□ -0.32
TRAPPC11-206ENST00000509857 SWI5Q1ZZU3 235 aa13.05□□□□□ -0.32
TRAPPC11-206ENST00000509857 RHOQP17081 205 aa13.04□□□□□ -0.32
TRAPPC11-206ENST00000509857 C4orf17Q53FE4 359 aa13.04□□□□□ -0.32
TRAPPC11-206ENST00000509857 TMEM164Q5U3C3 297 aa13.04□□□□□ -0.32
TRAPPC11-206ENST00000509857 SLC9A9Q8IVB4 645 aa13.04□□□□□ -0.32
TRAPPC11-206ENST00000509857 SLC35F4A4IF30 521 aa13.03□□□□□ -0.32
TRAPPC11-206ENST00000509857 NIFKQ9BYG3 293 aaKnown RBP13.03□□□□□ -0.32
TRAPPC11-206ENST00000509857 TSPAN10Q9H1Z9 355 aaPredicted RBP13.03□□□□□ -0.32
TRAPPC11-206ENST00000509857 POTEAQ6S8J7 498 aa13.02□□□□□ -0.33
TRAPPC11-206ENST00000509857 C21orf2O43822 256 aa13□□□□□ -0.33
TRAPPC11-206ENST00000509857 TEAD4Q15561 434 aa13□□□□□ -0.33
TRAPPC11-206ENST00000509857 GAS2L2Q8NHY3 880 aa13□□□□□ -0.33
TRAPPC11-206ENST00000509857 DYRK1BQ9Y463 629 aa13□□□□□ -0.33
TRAPPC11-206ENST00000509857 WEE1P30291 646 aa12.99□□□□□ -0.33
TRAPPC11-206ENST00000509857 PSMA6P60900 246 aaKnown RBP12.99□□□□□ -0.33
TRAPPC11-206ENST00000509857 NPAS3Q8IXF0 933 aa12.99□□□□□ -0.33
TRAPPC11-206ENST00000509857 STAG2Q8N3U4 1231 aa12.99□□□□□ -0.33
TRAPPC11-206ENST00000509857 ZDHHC1Q8WTX9 485 aa12.99□□□□□ -0.33
TRAPPC11-206ENST00000509857 HINFPQ9BQA5 517 aa12.99□□□□□ -0.33
TRAPPC11-206ENST00000509857 TIMMDC1Q9NPL8 285 aa12.99□□□□□ -0.33
TRAPPC11-206ENST00000509857 TMEM88BA6NKF7 163 aa12.98□□□□□ -0.33
TRAPPC11-206ENST00000509857 IGFBP4P22692 258 aa12.98□□□□□ -0.33
TRAPPC11-206ENST00000509857 CCDC155Q8N6L0 562 aa12.98□□□□□ -0.33
TRAPPC11-206ENST00000509857 CLP1Q92989 425 aaKnown RBP12.98□□□□□ -0.33
TRAPPC11-206ENST00000509857 A0A1B0GTH6 734 aa12.97□□□□□ -0.33
TRAPPC11-206ENST00000509857 CSB-PGBD3P0DP91 1061 aa12.97□□□□□ -0.33
TRAPPC11-206ENST00000509857 PHKA2P46019 1235 aa12.97□□□□□ -0.33
TRAPPC11-206ENST00000509857 PLA2G4AP47712 749 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms