RNA–Protein interactions for RNA: ENST00000509101.1

CXCL1-202, Transcript of C-X-C motif chemokine ligand 1, humanhuman

TSL 3

Gene CXCL1, Length 574 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1-202ENST00000509101 ATP6V1AP38606 617 aa22.21■■□□□ 1.15
CXCL1-202ENST00000509101 PXDNLA1KZ92 1463 aa22.21■■□□□ 1.15
CXCL1-202ENST00000509101 C4AP0C0L4 1744 aa22.2■■□□□ 1.14
CXCL1-202ENST00000509101 PHKG2P15735 406 aa22.2■■□□□ 1.14
CXCL1-202ENST00000509101 IFNL2Q8IZJ0 200 aa22.19■■□□□ 1.14
CXCL1-202ENST00000509101 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.19■■□□□ 1.14
CXCL1-202ENST00000509101 KDRP35968 1356 aa22.19■■□□□ 1.14
CXCL1-202ENST00000509101 BRCA1P38398 1863 aaKnown RBP22.19■■□□□ 1.14
CXCL1-202ENST00000509101 MMP10P09238 476 aa22.18■■□□□ 1.14
CXCL1-202ENST00000509101 ATG3Q9NT62 314 aa22.17■■□□□ 1.14
CXCL1-202ENST00000509101 POLKQ9UBT6 870 aa22.16■■□□□ 1.14
CXCL1-202ENST00000509101 C10orf71Q711Q0 1435 aa22.15■■□□□ 1.14
CXCL1-202ENST00000509101 KIF3CO14782 793 aa22.15■■□□□ 1.14
CXCL1-202ENST00000509101 MYH14Q7Z406 1995 aaKnown RBP22.14■■□□□ 1.14
CXCL1-202ENST00000509101 EIF4A2Q14240 407 aaKnown RBP22.14■■□□□ 1.13
CXCL1-202ENST00000509101 ARFGEF1Q9Y6D6 1849 aa22.13■■□□□ 1.13
CXCL1-202ENST00000509101 TNNT2P45379 298 aaPredicted RBP22.12■■□□□ 1.13
CXCL1-202ENST00000509101 RBM42Q9BTD8 480 aaKnown RBP22.12■■□□□ 1.13
CXCL1-202ENST00000509101 BCS1LQ9Y276 419 aa22.12■■□□□ 1.13
CXCL1-202ENST00000509101 RTCBQ9Y3I0 505 aaKnown RBP22.12■■□□□ 1.13
CXCL1-202ENST00000509101 PLEKHG2Q9H7P9 1386 aa22.12■■□□□ 1.13
CXCL1-202ENST00000509101 TRAPPC3LQ5T215 181 aa22.11■■□□□ 1.13
CXCL1-202ENST00000509101 SLC4A9Q96Q91 983 aa22.11■■□□□ 1.13
CXCL1-202ENST00000509101 POLR3GLQ9BT43 218 aa22.1■■□□□ 1.13
CXCL1-202ENST00000509101 TJP1Q07157 1748 aa22.09■■□□□ 1.13
CXCL1-202ENST00000509101 KDM6AO15550 1401 aaPredicted RBP22.09■■□□□ 1.13
CXCL1-202ENST00000509101 A0A0G2JLW4 131 aa22.09■■□□□ 1.13
CXCL1-202ENST00000509101 TGFB2P61812 414 aa22.09■■□□□ 1.13
CXCL1-202ENST00000509101 NLGN1Q8N2Q7 840 aa22.08■■□□□ 1.13
CXCL1-202ENST00000509101 CCDC87Q9NVE4 849 aa22.08■■□□□ 1.13
CXCL1-202ENST00000509101 CNTNAP4Q9C0A0 1308 aa22.07■■□□□ 1.12
CXCL1-202ENST00000509101 ERVV-2B6SEH9 535 aa22.07■■□□□ 1.12
CXCL1-202ENST00000509101 ARHGEF1Q92888 912 aaKnown RBP22.07■■□□□ 1.12
CXCL1-202ENST00000509101 WDR90Q96KV7 1748 aa22.06■■□□□ 1.12
CXCL1-202ENST00000509101 GYS1P13807 737 aa22.06■■□□□ 1.12
CXCL1-202ENST00000509101 ADRA2BP18089 450 aa22.06■■□□□ 1.12
CXCL1-202ENST00000509101 DCAF5Q96JK2 942 aa22.06■■□□□ 1.12
CXCL1-202ENST00000509101 HSP90AB1P08238 724 aaKnown RBP22.05■■□□□ 1.12
CXCL1-202ENST00000509101 DPEP1P16444 411 aa22.05■■□□□ 1.12
CXCL1-202ENST00000509101 RFC4P35249 363 aa22.05■■□□□ 1.12
CXCL1-202ENST00000509101 RC3H1Q5TC82 1133 aaKnown RBP22.05■■□□□ 1.12
CXCL1-202ENST00000509101 ARHGAP27Q6ZUM4 889 aa22.05■■□□□ 1.12
CXCL1-202ENST00000509101 PARP3Q9Y6F1 533 aa22.05■■□□□ 1.12
CXCL1-202ENST00000509101 FCHSD2O94868 740 aa22.04■■□□□ 1.12
CXCL1-202ENST00000509101 ZNF530Q6P9A1 599 aaPredicted RBP22.04■■□□□ 1.12
CXCL1-202ENST00000509101 SCN11AQ9UI33 1791 aa22.04■■□□□ 1.12
CXCL1-202ENST00000509101 RPS6KA4O75676 772 aa22.03■■□□□ 1.12
CXCL1-202ENST00000509101 APLP1P51693 650 aa22.03■■□□□ 1.12
CXCL1-202ENST00000509101 VIRMAQ69YN4 1812 aaKnown RBP22.03■■□□□ 1.12
CXCL1-202ENST00000509101 TOMM70O94826 608 aa22.02■■□□□ 1.12
CXCL1-202ENST00000509101 CABP4P57796 275 aa22.02■■□□□ 1.12
CXCL1-202ENST00000509101 PLEKHO1Q53GL0 409 aaPredicted RBP22.02■■□□□ 1.12
CXCL1-202ENST00000509101 NMRK2Q9NPI5 230 aa22.02■■□□□ 1.12
CXCL1-202ENST00000509101 ADAMTS7Q9UKP4 1686 aa22.01■■□□□ 1.11
CXCL1-202ENST00000509101 PTCD1O75127 700 aaKnown RBP22■■□□□ 1.11
CXCL1-202ENST00000509101 SBF1O95248 1867 aa22■■□□□ 1.11
CXCL1-202ENST00000509101 AEBP1Q8IUX7 1158 aa21.99■■□□□ 1.11
CXCL1-202ENST00000509101 SRP68Q9UHB9 627 aaKnown RBP21.99■■□□□ 1.11
CXCL1-202ENST00000509101 TNRC6CQ9HCJ0 1690 aaKnown RBP21.98■■□□□ 1.11
CXCL1-202ENST00000509101 CRKLP46109 303 aaKnown RBP21.98■■□□□ 1.11
CXCL1-202ENST00000509101 AMOTQ4VCS5 1084 aa21.98■■□□□ 1.11
CXCL1-202ENST00000509101 C9orf131Q5VYM1 1079 aa21.98■■□□□ 1.11
CXCL1-202ENST00000509101 KCPQ6ZWJ8 1503 aa21.97■■□□□ 1.11
CXCL1-202ENST00000509101 KCNA3P22001 575 aa21.97■■□□□ 1.11
CXCL1-202ENST00000509101 MTHFSP49914 203 aa21.97■■□□□ 1.11
CXCL1-202ENST00000509101 C1orf141Q5JVX7 400 aa21.97■■□□□ 1.11
CXCL1-202ENST00000509101 AFDNP55196 1824 aaKnown RBP21.96■■□□□ 1.11
CXCL1-202ENST00000509101 FKBP8Q14318 412 aa21.96■■□□□ 1.11
CXCL1-202ENST00000509101 USP42Q9H9J4 1324 aaKnown RBP21.96■■□□□ 1.11
CXCL1-202ENST00000509101 DDR1Q08345 913 aa21.95■■□□□ 1.1
CXCL1-202ENST00000509101 PIM2Q9P1W9 311 aa21.95■■□□□ 1.1
CXCL1-202ENST00000509101 TRIM26Q12899 539 aaPredicted RBP21.94■■□□□ 1.1
CXCL1-202ENST00000509101 DNAJC5GQ8N7S2 189 aa21.94■■□□□ 1.1
CXCL1-202ENST00000509101 NFATC2IPQ8NCF5 419 aa21.94■■□□□ 1.1
CXCL1-202ENST00000509101 PANK3Q9H999 370 aa21.94■■□□□ 1.1
CXCL1-202ENST00000509101 DLEC1Q9Y238 1755 aa21.94■■□□□ 1.1
CXCL1-202ENST00000509101 DALRD3Q5D0E6 543 aaKnown RBP21.93■■□□□ 1.1
CXCL1-202ENST00000509101 C16orf71Q8IYS4 520 aaPredicted RBP21.93■■□□□ 1.1
CXCL1-202ENST00000509101 RBM46Q8TBY0 533 aaKnown RBP21.93■■□□□ 1.1
CXCL1-202ENST00000509101 TIMELESSQ9UNS1 1208 aa21.93■■□□□ 1.1
CXCL1-202ENST00000509101 CHRNA5P30532 468 aa21.92■■□□□ 1.1
CXCL1-202ENST00000509101 RNF181Q9P0P0 153 aa21.92■■□□□ 1.1
CXCL1-202ENST00000509101 SULT6B1Q6IMI4 303 aa21.91■■□□□ 1.1
CXCL1-202ENST00000509101 TIAM2Q8IVF5 1701 aa21.9■■□□□ 1.1
CXCL1-202ENST00000509101 NRXN2Q9P2S2 1712 aa21.9■■□□□ 1.1
CXCL1-202ENST00000509101 MORC1Q86VD1 984 aa21.9■■□□□ 1.1
CXCL1-202ENST00000509101 KDM2BQ8NHM5 1336 aa21.89■■□□□ 1.1
CXCL1-202ENST00000509101 POLRMTO00411 1230 aaKnown RBP21.89■■□□□ 1.09
CXCL1-202ENST00000509101 HTRA3P83110 453 aa21.89■■□□□ 1.09
CXCL1-202ENST00000509101 CCDC88AQ3V6T2 1871 aa21.89■■□□□ 1.09
CXCL1-202ENST00000509101 MRC1P22897 1456 aa21.89■■□□□ 1.09
CXCL1-202ENST00000509101 HSPA5P11021 654 aaKnown RBP21.88■■□□□ 1.09
CXCL1-202ENST00000509101 INTS5Q6P9B9 1019 aaKnown RBP21.88■■□□□ 1.09
CXCL1-202ENST00000509101 USPL1Q5W0Q7 1092 aa21.87■■□□□ 1.09
CXCL1-202ENST00000509101 DNAJC10Q8IXB1 793 aa21.87■■□□□ 1.09
CXCL1-202ENST00000509101 EIF4G2P78344 907 aaKnown RBP eCLIP21.86■■□□□ 1.09
CXCL1-202ENST00000509101 UBR2Q8IWV8 1755 aa21.86■■□□□ 1.09
CXCL1-202ENST00000509101 SOS1Q07889 1333 aaPredicted RBP21.85■■□□□ 1.09
CXCL1-202ENST00000509101 ZPR1O75312 459 aa21.85■■□□□ 1.09
CXCL1-202ENST00000509101 TM4SF1P30408 202 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms