RNA–Protein interactions for RNA: ENST00000508546.5

NEDD9-211, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5

Gene NEDD9, Length 581 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-211ENST00000508546 FYB1O15117 783 aa13.21□□□□□ -0.29
NEDD9-211ENST00000508546 CYP27B1O15528 508 aa13.21□□□□□ -0.29
NEDD9-211ENST00000508546 PHF14O94880 888 aa13.21□□□□□ -0.29
NEDD9-211ENST00000508546 C9orf131Q5VYM1 1079 aa13.21□□□□□ -0.29
NEDD9-211ENST00000508546 FLT4P35916 1363 aa13.2□□□□□ -0.3
NEDD9-211ENST00000508546 ST20-MTHFSA0A0A6YYL1 179 aa13.2□□□□□ -0.3
NEDD9-211ENST00000508546 SSFA2P28290 1259 aa13.2□□□□□ -0.3
NEDD9-211ENST00000508546 ARHGAP27Q6ZUM4 889 aa13.2□□□□□ -0.3
NEDD9-211ENST00000508546 KDM2BQ8NHM5 1336 aa13.19□□□□□ -0.3
NEDD9-211ENST00000508546 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.19□□□□□ -0.3
NEDD9-211ENST00000508546 HSP90AB2PQ58FF8 381 aa13.19□□□□□ -0.3
NEDD9-211ENST00000508546 GGNBP2Q9H3C7 697 aa13.19□□□□□ -0.3
NEDD9-211ENST00000508546 NCAPD2Q15021 1401 aa13.19□□□□□ -0.3
NEDD9-211ENST00000508546 ANKRD26Q9UPS8 1709 aa13.19□□□□□ -0.3
NEDD9-211ENST00000508546 SBF1O95248 1867 aa13.19□□□□□ -0.3
NEDD9-211ENST00000508546 NKX1-1Q15270 411 aaPredicted RBP13.18□□□□□ -0.3
NEDD9-211ENST00000508546 PIGBQ92521 554 aa13.18□□□□□ -0.3
NEDD9-211ENST00000508546 RRAGCQ9HB90 399 aa13.18□□□□□ -0.3
NEDD9-211ENST00000508546 TONSLQ96HA7 1378 aa13.18□□□□□ -0.3
NEDD9-211ENST00000508546 LOC102724428A0A0B4J2F2 783 aa13.17□□□□□ -0.3
NEDD9-211ENST00000508546 FOXN1O15353 648 aa13.17□□□□□ -0.3
NEDD9-211ENST00000508546 SIK1P57059 783 aa13.17□□□□□ -0.3
NEDD9-211ENST00000508546 C4AP0C0L4 1744 aa13.16□□□□□ -0.3
NEDD9-211ENST00000508546 TIAM2Q8IVF5 1701 aa13.16□□□□□ -0.3
NEDD9-211ENST00000508546 ZNF831Q5JPB2 1677 aa13.16□□□□□ -0.3
NEDD9-211ENST00000508546 A0A0G2JLW4 131 aa13.16□□□□□ -0.3
NEDD9-211ENST00000508546 FCHSD2O94868 740 aa13.15□□□□□ -0.3
NEDD9-211ENST00000508546 MMP10P09238 476 aa13.15□□□□□ -0.3
NEDD9-211ENST00000508546 LINC00116Q8NCU8 138 aa13.15□□□□□ -0.3
NEDD9-211ENST00000508546 PRDM10Q9NQV6 1147 aa13.14□□□□□ -0.31
NEDD9-211ENST00000508546 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.14□□□□□ -0.31
NEDD9-211ENST00000508546 RNF181Q9P0P0 153 aa13.14□□□□□ -0.31
NEDD9-211ENST00000508546 SPG7Q9UQ90 795 aa13.14□□□□□ -0.31
NEDD9-211ENST00000508546 GNPATO15228 680 aa13.13□□□□□ -0.31
NEDD9-211ENST00000508546 DPEP1P16444 411 aa13.13□□□□□ -0.31
NEDD9-211ENST00000508546 TGFB2P61812 414 aa13.13□□□□□ -0.31
NEDD9-211ENST00000508546 TMF1P82094 1093 aa13.13□□□□□ -0.31
NEDD9-211ENST00000508546 COL5A3P25940 1745 aaPredicted RBP13.13□□□□□ -0.31
NEDD9-211ENST00000508546 ITPK1Q13572 414 aa13.12□□□□□ -0.31
NEDD9-211ENST00000508546 ABHD8Q96I13 439 aa13.12□□□□□ -0.31
NEDD9-211ENST00000508546 TMOD3Q9NYL9 352 aa13.12□□□□□ -0.31
NEDD9-211ENST00000508546 ASAP1Q9ULH1 1129 aa13.12□□□□□ -0.31
NEDD9-211ENST00000508546 MYH14Q7Z406 1995 aaKnown RBP13.11□□□□□ -0.31
NEDD9-211ENST00000508546 ATP6V1AP38606 617 aa13.11□□□□□ -0.31
NEDD9-211ENST00000508546 MKRN1Q9UHC7 482 aaKnown RBP13.11□□□□□ -0.31
NEDD9-211ENST00000508546 EMILIN1Q9Y6C2 1016 aa13.11□□□□□ -0.31
NEDD9-211ENST00000508546 IFNL2Q8IZJ0 200 aa13.1□□□□□ -0.31
NEDD9-211ENST00000508546 NLGN1Q8N2Q7 840 aa13.1□□□□□ -0.31
NEDD9-211ENST00000508546 DCAF5Q96JK2 942 aa13.1□□□□□ -0.31
NEDD9-211ENST00000508546 KDM6AO15550 1401 aaPredicted RBP13.1□□□□□ -0.31
NEDD9-211ENST00000508546 WASHC2AQ641Q2 1341 aa13.1□□□□□ -0.31
NEDD9-211ENST00000508546 KDRP35968 1356 aa13.09□□□□□ -0.31
NEDD9-211ENST00000508546 VIRMAQ69YN4 1812 aaKnown RBP13.09□□□□□ -0.31
NEDD9-211ENST00000508546 PHKG2P15735 406 aa13.09□□□□□ -0.31
NEDD9-211ENST00000508546 ADRA2BP18089 450 aa13.09□□□□□ -0.31
NEDD9-211ENST00000508546 KCNA3P22001 575 aa13.09□□□□□ -0.31
NEDD9-211ENST00000508546 MLLT1Q03111 559 aaPredicted RBP13.09□□□□□ -0.31
NEDD9-211ENST00000508546 CDCA8Q53HL2 280 aa13.09□□□□□ -0.31
NEDD9-211ENST00000508546 ATG3Q9NT62 314 aa13.09□□□□□ -0.31
NEDD9-211ENST00000508546 RTCBQ9Y3I0 505 aaKnown RBP13.09□□□□□ -0.31
NEDD9-211ENST00000508546 TRAPPC3LQ5T215 181 aa13.08□□□□□ -0.32
NEDD9-211ENST00000508546 RC3H1Q5TC82 1133 aaKnown RBP13.08□□□□□ -0.32
NEDD9-211ENST00000508546 EYA1Q99502 592 aa13.08□□□□□ -0.32
NEDD9-211ENST00000508546 CARD14Q9BXL6 1004 aa13.08□□□□□ -0.32
NEDD9-211ENST00000508546 CTCFP49711 727 aaPredicted RBP13.07□□□□□ -0.32
NEDD9-211ENST00000508546 CCDC87Q9NVE4 849 aa13.07□□□□□ -0.32
NEDD9-211ENST00000508546 PDE4DIPQ5VU43 2346 aa13.07□□□□□ -0.32
NEDD9-211ENST00000508546 CNTNAP1P78357 1384 aa13.07□□□□□ -0.32
NEDD9-211ENST00000508546 PPM1GO15355 546 aaPredicted RBP13.06□□□□□ -0.32
NEDD9-211ENST00000508546 LBX1P52954 281 aa13.06□□□□□ -0.32
NEDD9-211ENST00000508546 RASSF7Q02833 373 aa13.06□□□□□ -0.32
NEDD9-211ENST00000508546 ARHGEF1Q92888 912 aaKnown RBP13.06□□□□□ -0.32
NEDD9-211ENST00000508546 SLC4A9Q96Q91 983 aa13.06□□□□□ -0.32
NEDD9-211ENST00000508546 CREBZFQ9NS37 354 aa13.06□□□□□ -0.32
NEDD9-211ENST00000508546 CNTNAP4Q9C0A0 1308 aa13.06□□□□□ -0.32
NEDD9-211ENST00000508546 ZC3H4Q9UPT8 1303 aaKnown RBP13.06□□□□□ -0.32
NEDD9-211ENST00000508546 ERVV-2B6SEH9 535 aa13.05□□□□□ -0.32
NEDD9-211ENST00000508546 GYS1P13807 737 aa13.05□□□□□ -0.32
NEDD9-211ENST00000508546 VEGFAP15692 232 aaPredicted RBP13.05□□□□□ -0.32
NEDD9-211ENST00000508546 CCDC88AQ3V6T2 1871 aa13.04□□□□□ -0.32
NEDD9-211ENST00000508546 RPS6KA4O75676 772 aa13.04□□□□□ -0.32
NEDD9-211ENST00000508546 AIDAQ96BJ3 306 aa13.04□□□□□ -0.32
NEDD9-211ENST00000508546 PARP3Q9Y6F1 533 aa13.04□□□□□ -0.32
NEDD9-211ENST00000508546 TNRC18O15417 2968 aaPredicted RBP13.03□□□□□ -0.32
NEDD9-211ENST00000508546 RFC4P35249 363 aa13.03□□□□□ -0.32
NEDD9-211ENST00000508546 RGS19P49795 217 aa13.03□□□□□ -0.32
NEDD9-211ENST00000508546 DALRD3Q5D0E6 543 aaKnown RBP13.03□□□□□ -0.32
NEDD9-211ENST00000508546 POLKQ9UBT6 870 aa13.03□□□□□ -0.32
NEDD9-211ENST00000508546 DLEC1Q9Y238 1755 aa13.02□□□□□ -0.32
NEDD9-211ENST00000508546 GLTPD2A6NH11 291 aa13.02□□□□□ -0.33
NEDD9-211ENST00000508546 HSP90AB1P08238 724 aaKnown RBP13.02□□□□□ -0.33
NEDD9-211ENST00000508546 HSPA8P11142 646 aaKnown RBP13.02□□□□□ -0.33
NEDD9-211ENST00000508546 RBM42Q9BTD8 480 aaKnown RBP13.02□□□□□ -0.33
NEDD9-211ENST00000508546 PIM2Q9P1W9 311 aa13.02□□□□□ -0.33
NEDD9-211ENST00000508546 POTECB2RU33 542 aa13.01□□□□□ -0.33
NEDD9-211ENST00000508546 EIF4A2Q14240 407 aaKnown RBP13.01□□□□□ -0.33
NEDD9-211ENST00000508546 TJP1Q07157 1748 aa13□□□□□ -0.33
NEDD9-211ENST00000508546 ADAMTS7Q9UKP4 1686 aa13□□□□□ -0.33
NEDD9-211ENST00000508546 THSD7BQ9C0I4 1608 aa13□□□□□ -0.33
NEDD9-211ENST00000508546 CCDC85CA6NKD9 419 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms