RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 MAP2K3P46734 347 aa8.24□□□□□ -1.09
NUP54-206ENST00000508465 GALNT6Q8NCL4 622 aa8.24□□□□□ -1.09
NUP54-206ENST00000508465 SPOCK3Q9BQ16 436 aa8.24□□□□□ -1.09
NUP54-206ENST00000508465 PCDHB11Q9Y5F2 797 aa8.24□□□□□ -1.09
NUP54-206ENST00000508465 WASLO00401 505 aaPredicted RBP8.23□□□□□ -1.09
NUP54-206ENST00000508465 OIP5O43482 229 aa8.23□□□□□ -1.09
NUP54-206ENST00000508465 NR1H3Q13133 447 aa8.23□□□□□ -1.09
NUP54-206ENST00000508465 CFHR5Q9BXR6 569 aa8.23□□□□□ -1.09
NUP54-206ENST00000508465 PHF24Q9UPV7 400 aa8.23□□□□□ -1.09
NUP54-206ENST00000508465 OXCT2Q9BYC2 517 aaPredicted RBP8.22□□□□□ -1.09
NUP54-206ENST00000508465 ARHGEF10LQ9HCE6 1279 aa8.22□□□□□ -1.09
NUP54-206ENST00000508465 ADAM23O75077 832 aa8.21□□□□□ -1.1
NUP54-206ENST00000508465 GNRH1P01148 92 aa8.21□□□□□ -1.1
NUP54-206ENST00000508465 GTF2E1P29083 439 aaPredicted RBP8.21□□□□□ -1.1
NUP54-206ENST00000508465 GJD4Q96KN9 370 aaPredicted RBP8.21□□□□□ -1.1
NUP54-206ENST00000508465 TRAK2O60296 914 aa8.2□□□□□ -1.1
NUP54-206ENST00000508465 SCTRP47872 440 aa8.2□□□□□ -1.1
NUP54-206ENST00000508465 ESYT1Q9BSJ8 1104 aa8.2□□□□□ -1.1
NUP54-206ENST00000508465 OSBPL3Q9H4L5 887 aa8.2□□□□□ -1.1
NUP54-206ENST00000508465 CADPSQ9ULU8 1353 aa8.2□□□□□ -1.1
NUP54-206ENST00000508465 ALYREFQ86V81 257 aaKnown RBP8.19□□□□□ -1.1
NUP54-206ENST00000508465 CNKSR1Q969H4 720 aa8.19□□□□□ -1.1
NUP54-206ENST00000508465 MKL2Q9ULH7 1088 aa8.19□□□□□ -1.1
NUP54-206ENST00000508465 A0A1B0GTH6 734 aa8.18□□□□□ -1.1
NUP54-206ENST00000508465 SUPT5HO00267 1087 aaKnown RBP8.18□□□□□ -1.1
NUP54-206ENST00000508465 MYCP01106 439 aaPredicted RBP8.18□□□□□ -1.1
NUP54-206ENST00000508465 CSB-PGBD3P0DP91 1061 aa8.18□□□□□ -1.1
NUP54-206ENST00000508465 CENPCQ03188 943 aa8.18□□□□□ -1.1
NUP54-206ENST00000508465 PGBD3Q8N328 593 aa8.18□□□□□ -1.1
NUP54-206ENST00000508465 ZSCAN10Q96SZ4 725 aaPredicted RBP8.18□□□□□ -1.1
NUP54-206ENST00000508465 GDF2Q9UK05 429 aaPredicted RBP8.18□□□□□ -1.1
NUP54-206ENST00000508465 LBRQ14739 615 aaKnown RBP8.17□□□□□ -1.1
NUP54-206ENST00000508465 GNASQ5JWF2 1037 aa8.17□□□□□ -1.1
NUP54-206ENST00000508465 RRAGCQ9HB90 399 aa8.17□□□□□ -1.1
NUP54-206ENST00000508465 GPAMQ9HCL2 828 aa8.17□□□□□ -1.1
NUP54-206ENST00000508465 RAB6BQ9NRW1 208 aa8.17□□□□□ -1.1
NUP54-206ENST00000508465 APBB1O00213 710 aa8.16□□□□□ -1.1
NUP54-206ENST00000508465 PROCP04070 461 aa8.16□□□□□ -1.1
NUP54-206ENST00000508465 ITGB2P05107 769 aa8.16□□□□□ -1.1
NUP54-206ENST00000508465 PHKA2P46019 1235 aa8.16□□□□□ -1.1
NUP54-206ENST00000508465 TMEM214Q6NUQ4 689 aaKnown RBP8.16□□□□□ -1.1
NUP54-206ENST00000508465 KLRG1Q96E93 195 aa8.16□□□□□ -1.1
NUP54-206ENST00000508465 PDS5BQ9NTI5 1447 aa8.16□□□□□ -1.1
NUP54-206ENST00000508465 LAMC3Q9Y6N6 1575 aa8.15□□□□□ -1.1
NUP54-206ENST00000508465 TOP2AP11388 1531 aaKnown RBP8.15□□□□□ -1.1
NUP54-206ENST00000508465 SNRPNP63162 240 aaKnown RBP8.15□□□□□ -1.1
NUP54-206ENST00000508465 ESCO1Q5FWF5 840 aa8.15□□□□□ -1.1
NUP54-206ENST00000508465 EFHC2Q5JST6 749 aa8.15□□□□□ -1.1
NUP54-206ENST00000508465 GOLGA6L1Q8N7Z2 621 aa8.15□□□□□ -1.1
NUP54-206ENST00000508465 BANK1Q8NDB2 785 aa8.15□□□□□ -1.1
NUP54-206ENST00000508465 EDARADDQ8WWZ3 215 aa8.15□□□□□ -1.1
NUP54-206ENST00000508465 CCDC88BA6NC98 1476 aa8.14□□□□□ -1.11
NUP54-206ENST00000508465 K7ELQ4 463 aaPredicted RBP8.14□□□□□ -1.11
NUP54-206ENST00000508465 PIK3R2O00459 728 aa8.14□□□□□ -1.11
NUP54-206ENST00000508465 IL2RAP01589 272 aa8.14□□□□□ -1.11
NUP54-206ENST00000508465 IL27Q8NEV9 243 aa8.14□□□□□ -1.11
NUP54-206ENST00000508465 XAGE2Q96GT9 111 aa8.14□□□□□ -1.11
NUP54-206ENST00000508465 NDUFB9Q9Y6M9 179 aa8.14□□□□□ -1.11
NUP54-206ENST00000508465 SHISA8B8ZZ34 492 aa8.13□□□□□ -1.11
NUP54-206ENST00000508465 SOCS7O14512 581 aa8.13□□□□□ -1.11
NUP54-206ENST00000508465 AMPD1P23109 780 aa8.13□□□□□ -1.11
NUP54-206ENST00000508465 BMP4P12644 408 aa8.12□□□□□ -1.11
NUP54-206ENST00000508465 CEP126Q9P2H0 1117 aa8.12□□□□□ -1.11
NUP54-206ENST00000508465 ATXN7L1Q9ULK2 861 aaPredicted RBP8.12□□□□□ -1.11
NUP54-206ENST00000508465 CUX2O14529 1486 aa8.12□□□□□ -1.11
NUP54-206ENST00000508465 KIF21AQ7Z4S6 1674 aa8.11□□□□□ -1.11
NUP54-206ENST00000508465 KRBA1A5PL33 1030 aa8.11□□□□□ -1.11
NUP54-206ENST00000508465 THBS1P07996 1170 aa8.11□□□□□ -1.11
NUP54-206ENST00000508465 BAG6P46379 1132 aa8.11□□□□□ -1.11
NUP54-206ENST00000508465 XP32Q5T750 250 aa8.11□□□□□ -1.11
NUP54-206ENST00000508465 BCANQ96GW7 911 aa8.11□□□□□ -1.11
NUP54-206ENST00000508465 RUBCNLQ9H714 662 aa8.11□□□□□ -1.11
NUP54-206ENST00000508465 MSX1P28360 303 aa8.1□□□□□ -1.11
NUP54-206ENST00000508465 USP4Q13107 963 aa8.1□□□□□ -1.11
NUP54-206ENST00000508465 NEUROD2Q15784 382 aa8.1□□□□□ -1.11
NUP54-206ENST00000508465 C4orf17Q53FE4 359 aa8.1□□□□□ -1.11
NUP54-206ENST00000508465 C1orf229Q6ZS94 237 aaPredicted RBP8.1□□□□□ -1.11
NUP54-206ENST00000508465 HRH3Q9Y5N1 445 aa8.1□□□□□ -1.11
NUP54-206ENST00000508465 CFTRP13569 1480 aa8.1□□□□□ -1.11
NUP54-206ENST00000508465 FANCD2Q9BXW9 1451 aa8.09□□□□□ -1.11
NUP54-206ENST00000508465 GRIN2CQ14957 1233 aa8.09□□□□□ -1.11
NUP54-206ENST00000508465 RHBDD1Q8TEB9 315 aa8.09□□□□□ -1.11
NUP54-206ENST00000508465 CDCA7Q9BWT1 371 aaPredicted RBP8.09□□□□□ -1.11
NUP54-206ENST00000508465 FHDC1Q9C0D6 1143 aaPredicted RBP8.09□□□□□ -1.11
NUP54-206ENST00000508465 FGFR3P22607 806 aa8.08□□□□□ -1.12
NUP54-206ENST00000508465 UBAP2LQ14157 1087 aaKnown RBP8.08□□□□□ -1.12
NUP54-206ENST00000508465 FIGNL1Q6PIW4 674 aa8.08□□□□□ -1.12
NUP54-206ENST00000508465 SIRT1Q96EB6 747 aa8.08□□□□□ -1.12
NUP54-206ENST00000508465 CCDC85AQ96PX6 553 aaPredicted RBP8.08□□□□□ -1.12
NUP54-206ENST00000508465 THOC2Q8NI27 1593 aaKnown RBP8.07□□□□□ -1.12
NUP54-206ENST00000508465 COL8A1P27658 744 aa8.07□□□□□ -1.12
NUP54-206ENST00000508465 SLCO4C1Q6ZQN7 724 aa8.07□□□□□ -1.12
NUP54-206ENST00000508465 PPARGC1BQ86YN6 1023 aaKnown RBP8.07□□□□□ -1.12
NUP54-206ENST00000508465 MTMR14Q8NCE2 650 aa8.07□□□□□ -1.12
NUP54-206ENST00000508465 ABHD17AQ96GS6 310 aa8.07□□□□□ -1.12
NUP54-206ENST00000508465 PRM3Q9NNZ6 103 aa8.07□□□□□ -1.12
NUP54-206ENST00000508465 GGA1Q9UJY5 639 aa8.07□□□□□ -1.12
NUP54-206ENST00000508465 MRC2Q9UBG0 1479 aa8.06□□□□□ -1.12
NUP54-206ENST00000508465 CEP164Q9UPV0 1460 aa8.06□□□□□ -1.12
NUP54-206ENST00000508465 GNB5O14775 395 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms