RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 C1orf141Q5JVX7 400 aa28.77■■■□□ 2.2
SQSTM1-210ENST00000506042 IGSF1Q8N6C5 1336 aa28.76■■■□□ 2.19
SQSTM1-210ENST00000506042 LINC00116Q8NCU8 138 aa28.76■■■□□ 2.19
SQSTM1-210ENST00000506042 ADRA2BP18089 450 aa28.75■■■□□ 2.19
SQSTM1-210ENST00000506042 TRAPPC3LQ5T215 181 aa28.75■■■□□ 2.19
SQSTM1-210ENST00000506042 NLGN1Q8N2Q7 840 aa28.75■■■□□ 2.19
SQSTM1-210ENST00000506042 MORC1Q86VD1 984 aa28.74■■■□□ 2.19
SQSTM1-210ENST00000506042 RBM42Q9BTD8 480 aaKnown RBP28.74■■■□□ 2.19
SQSTM1-210ENST00000506042 ZNF831Q5JPB2 1677 aa28.74■■■□□ 2.19
SQSTM1-210ENST00000506042 UTRNP46939 3433 aa28.74■■■□□ 2.19
SQSTM1-210ENST00000506042 CABP4P57796 275 aa28.73■■■□□ 2.19
SQSTM1-210ENST00000506042 ATG3Q9NT62 314 aa28.73■■■□□ 2.19
SQSTM1-210ENST00000506042 ATP10DQ9P241 1426 aa28.73■■■□□ 2.19
SQSTM1-210ENST00000506042 ZNF530Q6P9A1 599 aaPredicted RBP28.72■■■□□ 2.19
SQSTM1-210ENST00000506042 PANK3Q9H999 370 aa28.72■■■□□ 2.19
SQSTM1-210ENST00000506042 KNSTRNQ9Y448 316 aa28.71■■■□□ 2.19
SQSTM1-210ENST00000506042 RC3H1Q5TC82 1133 aaKnown RBP28.7■■■□□ 2.18
SQSTM1-210ENST00000506042 RFC4P35249 363 aa28.69■■■□□ 2.18
SQSTM1-210ENST00000506042 ITPK1Q13572 414 aa28.69■■■□□ 2.18
SQSTM1-210ENST00000506042 MMP10P09238 476 aa28.68■■■□□ 2.18
SQSTM1-210ENST00000506042 HSPA5P11021 654 aaKnown RBP28.68■■■□□ 2.18
SQSTM1-210ENST00000506042 MTHFSP49914 203 aa28.68■■■□□ 2.18
SQSTM1-210ENST00000506042 TGFB2P61812 414 aa28.68■■■□□ 2.18
SQSTM1-210ENST00000506042 CCDC87Q9NVE4 849 aa28.67■■■□□ 2.18
SQSTM1-210ENST00000506042 CNTNAP4Q9C0A0 1308 aa28.67■■■□□ 2.18
SQSTM1-210ENST00000506042 KDRP35968 1356 aa28.65■■■□□ 2.18
SQSTM1-210ENST00000506042 PARP3Q9Y6F1 533 aa28.65■■■□□ 2.18
SQSTM1-210ENST00000506042 CCER1Q8TC90 406 aaPredicted RBP28.64■■■□□ 2.18
SQSTM1-210ENST00000506042 AMIGO3Q86WK7 504 aa28.63■■■□□ 2.17
SQSTM1-210ENST00000506042 RPS6KA4O75676 772 aa28.62■■■□□ 2.17
SQSTM1-210ENST00000506042 ADCY9O60503 1353 aa28.61■■■□□ 2.17
SQSTM1-210ENST00000506042 ZNF526Q8TF50 670 aaPredicted RBP28.6■■■□□ 2.17
SQSTM1-210ENST00000506042 CICQ96RK0 1608 aaPredicted RBP28.59■■■□□ 2.17
SQSTM1-210ENST00000506042 SMIM5Q71RC9 77 aa28.59■■■□□ 2.17
SQSTM1-210ENST00000506042 ARHGEF1Q92888 912 aaKnown RBP28.59■■■□□ 2.17
SQSTM1-210ENST00000506042 COL5A3P25940 1745 aaPredicted RBP28.59■■■□□ 2.17
SQSTM1-210ENST00000506042 KIF13BQ9NQT8 1826 aa28.58■■■□□ 2.17
SQSTM1-210ENST00000506042 SULT6B1Q6IMI4 303 aa28.58■■■□□ 2.17
SQSTM1-210ENST00000506042 WWC3Q9ULE0 1092 aa28.58■■■□□ 2.17
SQSTM1-210ENST00000506042 BCS1LQ9Y276 419 aa28.57■■■□□ 2.16
SQSTM1-210ENST00000506042 PTCD1O75127 700 aaKnown RBP28.56■■■□□ 2.16
SQSTM1-210ENST00000506042 C4AP0C0L4 1744 aa28.55■■■□□ 2.16
SQSTM1-210ENST00000506042 KDM6AO15550 1401 aaPredicted RBP28.55■■■□□ 2.16
SQSTM1-210ENST00000506042 PXDNLA1KZ92 1463 aa28.54■■■□□ 2.16
SQSTM1-210ENST00000506042 C10orf71Q711Q0 1435 aa28.54■■■□□ 2.16
SQSTM1-210ENST00000506042 NFATC2IPQ8NCF5 419 aa28.54■■■□□ 2.16
SQSTM1-210ENST00000506042 GOLGB1Q14789 3259 aaKnown RBP28.54■■■□□ 2.16
SQSTM1-210ENST00000506042 GYS1P13807 737 aa28.53■■■□□ 2.16
SQSTM1-210ENST00000506042 AKAP4Q5JQC9 854 aa28.53■■■□□ 2.16
SQSTM1-210ENST00000506042 HSPA6P17066 643 aa28.52■■■□□ 2.16
SQSTM1-210ENST00000506042 FCHSD2O94868 740 aa28.51■■■□□ 2.15
SQSTM1-210ENST00000506042 CRKLP46109 303 aaKnown RBP28.51■■■□□ 2.15
SQSTM1-210ENST00000506042 ZPR1O75312 459 aa28.5■■■□□ 2.15
SQSTM1-210ENST00000506042 ARHGAP27Q6ZUM4 889 aa28.5■■■□□ 2.15
SQSTM1-210ENST00000506042 AEBP1Q8IUX7 1158 aa28.5■■■□□ 2.15
SQSTM1-210ENST00000506042 SLC4A9Q96Q91 983 aa28.5■■■□□ 2.15
SQSTM1-210ENST00000506042 A0A0G2JLW4 131 aa28.49■■■□□ 2.15
SQSTM1-210ENST00000506042 N4BP2Q86UW6 1770 aaPredicted RBP28.49■■■□□ 2.15
SQSTM1-210ENST00000506042 SCN11AQ9UI33 1791 aa28.49■■■□□ 2.15
SQSTM1-210ENST00000506042 PIM2Q9P1W9 311 aa28.48■■■□□ 2.15
SQSTM1-210ENST00000506042 IL13P35225 146 aa28.47■■■□□ 2.15
SQSTM1-210ENST00000506042 USP42Q9H9J4 1324 aaKnown RBP28.46■■■□□ 2.15
SQSTM1-210ENST00000506042 DPEP1P16444 411 aa28.45■■■□□ 2.14
SQSTM1-210ENST00000506042 SLC52A2Q9HAB3 445 aa28.45■■■□□ 2.14
SQSTM1-210ENST00000506042 DALRD3Q5D0E6 543 aaKnown RBP28.43■■■□□ 2.14
SQSTM1-210ENST00000506042 C16orf71Q8IYS4 520 aaPredicted RBP28.43■■■□□ 2.14
SQSTM1-210ENST00000506042 KIAA1551Q9HCM1 1747 aa28.41■■■□□ 2.14
SQSTM1-210ENST00000506042 MYH14Q7Z406 1995 aaKnown RBP28.41■■■□□ 2.14
SQSTM1-210ENST00000506042 DIAPH1O60610 1272 aaKnown RBP28.41■■■□□ 2.14
SQSTM1-210ENST00000506042 TOMM70O94826 608 aa28.41■■■□□ 2.14
SQSTM1-210ENST00000506042 TJP1Q07157 1748 aa28.4■■■□□ 2.14
SQSTM1-210ENST00000506042 AMER1Q5JTC6 1135 aaPredicted RBP28.4■■■□□ 2.14
SQSTM1-210ENST00000506042 ARFGEF1Q9Y6D6 1849 aa28.4■■■□□ 2.14
SQSTM1-210ENST00000506042 APLP1P51693 650 aa28.39■■■□□ 2.14
SQSTM1-210ENST00000506042 TTC5Q8N0Z6 440 aa28.39■■■□□ 2.14
SQSTM1-210ENST00000506042 KDM2BQ8NHM5 1336 aa28.39■■■□□ 2.13
SQSTM1-210ENST00000506042 BRCA1P38398 1863 aaKnown RBP28.38■■■□□ 2.13
SQSTM1-210ENST00000506042 KIF3CO14782 793 aa28.37■■■□□ 2.13
SQSTM1-210ENST00000506042 RNMTO43148 476 aaKnown RBP28.37■■■□□ 2.13
SQSTM1-210ENST00000506042 FKBP8Q14318 412 aa28.37■■■□□ 2.13
SQSTM1-210ENST00000506042 NPM2Q86SE8 214 aaKnown RBP28.37■■■□□ 2.13
SQSTM1-210ENST00000506042 VSIG10Q8N0Z9 540 aa28.37■■■□□ 2.13
SQSTM1-210ENST00000506042 SRP68Q9UHB9 627 aaKnown RBP28.37■■■□□ 2.13
SQSTM1-210ENST00000506042 MRC1P22897 1456 aa28.36■■■□□ 2.13
SQSTM1-210ENST00000506042 HMOX1P09601 288 aa28.36■■■□□ 2.13
SQSTM1-210ENST00000506042 KIF7Q2M1P5 1343 aa28.36■■■□□ 2.13
SQSTM1-210ENST00000506042 STARD3NLO95772 234 aa28.35■■■□□ 2.13
SQSTM1-210ENST00000506042 INTS5Q6P9B9 1019 aaKnown RBP28.35■■■□□ 2.13
SQSTM1-210ENST00000506042 DNAJC10Q8IXB1 793 aa28.35■■■□□ 2.13
SQSTM1-210ENST00000506042 A0A087WZG4 1122 aa28.33■■■□□ 2.13
SQSTM1-210ENST00000506042 TEFQ10587 303 aa28.33■■■□□ 2.13
SQSTM1-210ENST00000506042 C9orf131Q5VYM1 1079 aa28.33■■■□□ 2.13
SQSTM1-210ENST00000506042 NARFQ9UHQ1 456 aa28.33■■■□□ 2.13
SQSTM1-210ENST00000506042 SOS1Q07889 1333 aaPredicted RBP28.33■■■□□ 2.13
SQSTM1-210ENST00000506042 COL15A1P39059 1388 aa28.33■■■□□ 2.13
SQSTM1-210ENST00000506042 USPL1Q5W0Q7 1092 aa28.32■■■□□ 2.12
SQSTM1-210ENST00000506042 TEX13AQ9BXU3 409 aaPredicted RBP28.32■■■□□ 2.12
SQSTM1-210ENST00000506042 VIRMAQ69YN4 1812 aaKnown RBP28.32■■■□□ 2.12
SQSTM1-210ENST00000506042 POLRMTO00411 1230 aaKnown RBP28.31■■■□□ 2.12
SQSTM1-210ENST00000506042 CYP19A1P11511 503 aaPredicted RBP28.31■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms