RNA–Protein interactions for RNA: ENST00000505522.4

SNHG4-202, Transcript of small nucleolar RNA host gene 4, humanhuman

TSL 1 (best)

Gene SNHG4, Length 629 nt, Biotype processed transcript, Subcellular localisation Nucleoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG4-202ENST00000505522 KNSTRNQ9Y448 316 aa16.72■□□□□ 0.27
SNHG4-202ENST00000505522 CD2APQ9Y5K6 639 aa16.72■□□□□ 0.27
SNHG4-202ENST00000505522 ERVV-2B6SEH9 535 aa16.71■□□□□ 0.27
SNHG4-202ENST00000505522 PLEKHO1Q53GL0 409 aaPredicted RBP16.71■□□□□ 0.27
SNHG4-202ENST00000505522 ZNF530Q6P9A1 599 aaPredicted RBP16.71■□□□□ 0.27
SNHG4-202ENST00000505522 KDRP35968 1356 aa16.71■□□□□ 0.27
SNHG4-202ENST00000505522 KDM6AO15550 1401 aaPredicted RBP16.7■□□□□ 0.26
SNHG4-202ENST00000505522 GNPATO15228 680 aa16.7■□□□□ 0.26
SNHG4-202ENST00000505522 DCAF5Q96JK2 942 aa16.7■□□□□ 0.26
SNHG4-202ENST00000505522 SLC4A9Q96Q91 983 aa16.7■□□□□ 0.26
SNHG4-202ENST00000505522 HSP90AB1P08238 724 aaKnown RBP16.69■□□□□ 0.26
SNHG4-202ENST00000505522 AMOTQ4VCS5 1084 aa16.69■□□□□ 0.26
SNHG4-202ENST00000505522 AMER1Q5JTC6 1135 aaPredicted RBP16.69■□□□□ 0.26
SNHG4-202ENST00000505522 KIF7Q2M1P5 1343 aa16.69■□□□□ 0.26
SNHG4-202ENST00000505522 GRIN3BO60391 1043 aa16.68■□□□□ 0.26
SNHG4-202ENST00000505522 ZNF831Q5JPB2 1677 aa16.67■□□□□ 0.26
SNHG4-202ENST00000505522 IL13P35225 146 aa16.67■□□□□ 0.26
SNHG4-202ENST00000505522 SULT6B1Q6IMI4 303 aa16.67■□□□□ 0.26
SNHG4-202ENST00000505522 RBM42Q9BTD8 480 aaKnown RBP16.67■□□□□ 0.26
SNHG4-202ENST00000505522 MTHFSP49914 203 aa16.66■□□□□ 0.26
SNHG4-202ENST00000505522 CABP4P57796 275 aa16.66■□□□□ 0.26
SNHG4-202ENST00000505522 COL5A3P25940 1745 aaPredicted RBP16.65■□□□□ 0.26
SNHG4-202ENST00000505522 C1orf141Q5JVX7 400 aa16.64■□□□□ 0.25
SNHG4-202ENST00000505522 RTCBQ9Y3I0 505 aaKnown RBP16.64■□□□□ 0.25
SNHG4-202ENST00000505522 PER1O15534 1290 aaPredicted RBP16.63■□□□□ 0.25
SNHG4-202ENST00000505522 C1QTNF8P60827 252 aa16.63■□□□□ 0.25
SNHG4-202ENST00000505522 TRAPPC3LQ5T215 181 aa16.63■□□□□ 0.25
SNHG4-202ENST00000505522 RC3H1Q5TC82 1133 aaKnown RBP16.63■□□□□ 0.25
SNHG4-202ENST00000505522 NFATC2IPQ8NCF5 419 aa16.63■□□□□ 0.25
SNHG4-202ENST00000505522 WWC3Q9ULE0 1092 aa16.63■□□□□ 0.25
SNHG4-202ENST00000505522 PTCD1O75127 700 aaKnown RBP16.62■□□□□ 0.25
SNHG4-202ENST00000505522 MMP10P09238 476 aa16.62■□□□□ 0.25
SNHG4-202ENST00000505522 ARHGEF1Q92888 912 aaKnown RBP16.62■□□□□ 0.25
SNHG4-202ENST00000505522 CNTNAP4Q9C0A0 1308 aa16.62■□□□□ 0.25
SNHG4-202ENST00000505522 SCN11AQ9UI33 1791 aa16.61■□□□□ 0.25
SNHG4-202ENST00000505522 MYH14Q7Z406 1995 aaKnown RBP16.6■□□□□ 0.25
SNHG4-202ENST00000505522 RPS6KA4O75676 772 aa16.6■□□□□ 0.25
SNHG4-202ENST00000505522 CC2D1BQ5T0F9 858 aaKnown RBP16.6■□□□□ 0.25
SNHG4-202ENST00000505522 CICQ96RK0 1608 aaPredicted RBP16.59■□□□□ 0.25
SNHG4-202ENST00000505522 GIGYF1O75420 1035 aaPredicted RBP16.59■□□□□ 0.25
SNHG4-202ENST00000505522 HMOX1P09601 288 aa16.59■□□□□ 0.25
SNHG4-202ENST00000505522 ADRA2BP18089 450 aa16.59■□□□□ 0.25
SNHG4-202ENST00000505522 C4AP0C0L4 1744 aa16.59■□□□□ 0.25
SNHG4-202ENST00000505522 TJP1Q07157 1748 aa16.59■□□□□ 0.25
SNHG4-202ENST00000505522 GYS1P13807 737 aa16.58■□□□□ 0.24
SNHG4-202ENST00000505522 RFC4P35249 363 aa16.58■□□□□ 0.24
SNHG4-202ENST00000505522 CRKLP46109 303 aaKnown RBP16.58■□□□□ 0.24
SNHG4-202ENST00000505522 AKAP4Q5JQC9 854 aa16.58■□□□□ 0.24
SNHG4-202ENST00000505522 NLGN1Q8N2Q7 840 aa16.58■□□□□ 0.24
SNHG4-202ENST00000505522 LGR6Q9HBX8 967 aa16.58■□□□□ 0.24
SNHG4-202ENST00000505522 ATP10DQ9P241 1426 aa16.58■□□□□ 0.24
SNHG4-202ENST00000505522 KIAA1551Q9HCM1 1747 aa16.58■□□□□ 0.24
SNHG4-202ENST00000505522 KIF13BQ9NQT8 1826 aa16.58■□□□□ 0.24
SNHG4-202ENST00000505522 PXDNLA1KZ92 1463 aa16.57■□□□□ 0.24
SNHG4-202ENST00000505522 SENP3-EIF4A1A0A087X0R7 540 aa16.57■□□□□ 0.24
SNHG4-202ENST00000505522 DIAPH1O60610 1272 aaKnown RBP16.56■□□□□ 0.24
SNHG4-202ENST00000505522 SLC52A2Q9HAB3 445 aa16.56■□□□□ 0.24
SNHG4-202ENST00000505522 N4BP2Q86UW6 1770 aaPredicted RBP16.56■□□□□ 0.24
SNHG4-202ENST00000505522 C10orf71Q711Q0 1435 aa16.55■□□□□ 0.24
SNHG4-202ENST00000505522 ADCY9O60503 1353 aa16.55■□□□□ 0.24
SNHG4-202ENST00000505522 RNMTO43148 476 aaKnown RBP16.55■□□□□ 0.24
SNHG4-202ENST00000505522 MTHFSDQ2M296 383 aaKnown RBP16.55■□□□□ 0.24
SNHG4-202ENST00000505522 MRC1P22897 1456 aa16.54■□□□□ 0.24
SNHG4-202ENST00000505522 A0A0G2JLW4 131 aa16.54■□□□□ 0.24
SNHG4-202ENST00000505522 CNGB1Q14028 1251 aaPredicted RBP16.54■□□□□ 0.24
SNHG4-202ENST00000505522 INTS5Q6P9B9 1019 aaKnown RBP16.54■□□□□ 0.24
SNHG4-202ENST00000505522 SRP68Q9UHB9 627 aaKnown RBP16.54■□□□□ 0.24
SNHG4-202ENST00000505522 VIRMAQ69YN4 1812 aaKnown RBP16.54■□□□□ 0.24
SNHG4-202ENST00000505522 COL3A1P02461 1466 aaPredicted RBP16.54■□□□□ 0.24
SNHG4-202ENST00000505522 TGFB2P61812 414 aa16.53■□□□□ 0.24
SNHG4-202ENST00000505522 SLC39A6Q13433 755 aa16.53■□□□□ 0.24
SNHG4-202ENST00000505522 DNAJC10Q8IXB1 793 aa16.53■□□□□ 0.24
SNHG4-202ENST00000505522 CCDC87Q9NVE4 849 aa16.53■□□□□ 0.24
SNHG4-202ENST00000505522 PARP3Q9Y6F1 533 aa16.53■□□□□ 0.24
SNHG4-202ENST00000505522 ADAMTS7Q9UKP4 1686 aa16.53■□□□□ 0.24
SNHG4-202ENST00000505522 NPC1L1Q9UHC9 1359 aa16.52■□□□□ 0.24
SNHG4-202ENST00000505522 USP42Q9H9J4 1324 aaKnown RBP16.52■□□□□ 0.24
SNHG4-202ENST00000505522 FKBP8Q14318 412 aa16.52■□□□□ 0.24
SNHG4-202ENST00000505522 KCPQ6ZWJ8 1503 aa16.51■□□□□ 0.23
SNHG4-202ENST00000505522 DPEP1P16444 411 aa16.51■□□□□ 0.23
SNHG4-202ENST00000505522 ZNF526Q8TF50 670 aaPredicted RBP16.51■□□□□ 0.23
SNHG4-202ENST00000505522 GPBP1L1Q9HC44 474 aaPredicted RBP16.51■□□□□ 0.23
SNHG4-202ENST00000505522 DDR1Q08345 913 aa16.5■□□□□ 0.23
SNHG4-202ENST00000505522 BCS1LQ9Y276 419 aa16.5■□□□□ 0.23
SNHG4-202ENST00000505522 CYP19A1P11511 503 aaPredicted RBP16.49■□□□□ 0.23
SNHG4-202ENST00000505522 KCNA3P22001 575 aa16.49■□□□□ 0.23
SNHG4-202ENST00000505522 SOS1Q07889 1333 aaPredicted RBP16.48■□□□□ 0.23
SNHG4-202ENST00000505522 BRCA1P38398 1863 aaKnown RBP16.48■□□□□ 0.23
SNHG4-202ENST00000505522 U2SURPO15042 1029 aaKnown RBP16.48■□□□□ 0.23
SNHG4-202ENST00000505522 UBR2Q8IWV8 1755 aa16.46■□□□□ 0.23
SNHG4-202ENST00000505522 POLRMTO00411 1230 aaKnown RBP16.46■□□□□ 0.23
SNHG4-202ENST00000505522 FCHSD2O94868 740 aa16.46■□□□□ 0.23
SNHG4-202ENST00000505522 TM4SF1P30408 202 aa16.46■□□□□ 0.23
SNHG4-202ENST00000505522 USPL1Q5W0Q7 1092 aa16.46■□□□□ 0.23
SNHG4-202ENST00000505522 ARHGAP27Q6ZUM4 889 aa16.46■□□□□ 0.23
SNHG4-202ENST00000505522 ZBTB1Q9Y2K1 713 aa16.46■□□□□ 0.23
SNHG4-202ENST00000505522 ZPR1O75312 459 aa16.45■□□□□ 0.22
SNHG4-202ENST00000505522 VSIG10Q8N0Z9 540 aa16.45■□□□□ 0.22
SNHG4-202ENST00000505522 COL15A1P39059 1388 aa16.45■□□□□ 0.22
SNHG4-202ENST00000505522 IL17REQ8NFR9 667 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms