RNA–Protein interactions for RNA: ENST00000504318.5

PDLIM7-211, Transcript of PDZ and LIM domain 7, humanhuman

TSL 3

Gene PDLIM7, Length 597 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-211ENST00000504318 TMOD3Q9NYL9 352 aa19.05■□□□□ 0.64
PDLIM7-211ENST00000504318 ZNF530Q6P9A1 599 aaPredicted RBP19.04■□□□□ 0.64
PDLIM7-211ENST00000504318 ARXQ96QS3 562 aa19.04■□□□□ 0.64
PDLIM7-211ENST00000504318 MRC1P22897 1456 aa19.03■□□□□ 0.64
PDLIM7-211ENST00000504318 MYH14Q7Z406 1995 aaKnown RBP19.02■□□□□ 0.64
PDLIM7-211ENST00000504318 HSP90AB1P08238 724 aaKnown RBP19.01■□□□□ 0.63
PDLIM7-211ENST00000504318 SMIM5Q71RC9 77 aa19.01■□□□□ 0.63
PDLIM7-211ENST00000504318 TJP1Q07157 1748 aa19■□□□□ 0.63
PDLIM7-211ENST00000504318 DIAPH1O60610 1272 aaKnown RBP18.98■□□□□ 0.63
PDLIM7-211ENST00000504318 HMOX1P09601 288 aa18.98■□□□□ 0.63
PDLIM7-211ENST00000504318 AKAP4Q5JQC9 854 aa18.97■□□□□ 0.63
PDLIM7-211ENST00000504318 GOLGB1Q14789 3259 aaKnown RBP18.96■□□□□ 0.63
PDLIM7-211ENST00000504318 ATP6V1AP38606 617 aa18.96■□□□□ 0.63
PDLIM7-211ENST00000504318 MTHFSDQ2M296 383 aaKnown RBP18.96■□□□□ 0.63
PDLIM7-211ENST00000504318 C4AP0C0L4 1744 aa18.96■□□□□ 0.63
PDLIM7-211ENST00000504318 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.95■□□□□ 0.62
PDLIM7-211ENST00000504318 HMGB2P26583 209 aaKnown RBP18.95■□□□□ 0.62
PDLIM7-211ENST00000504318 SSFA2P28290 1259 aa18.95■□□□□ 0.62
PDLIM7-211ENST00000504318 C1orf141Q5JVX7 400 aa18.95■□□□□ 0.62
PDLIM7-211ENST00000504318 FLAD1Q8NFF5 587 aa18.95■□□□□ 0.62
PDLIM7-211ENST00000504318 AK7Q96M32 723 aa18.95■□□□□ 0.62
PDLIM7-211ENST00000504318 LGR6Q9HBX8 967 aa18.95■□□□□ 0.62
PDLIM7-211ENST00000504318 SIPA1L3O60292 1781 aaPredicted RBP18.95■□□□□ 0.62
PDLIM7-211ENST00000504318 UBR2Q8IWV8 1755 aa18.95■□□□□ 0.62
PDLIM7-211ENST00000504318 POLD1P28340 1107 aa18.94■□□□□ 0.62
PDLIM7-211ENST00000504318 CABP4P57796 275 aa18.94■□□□□ 0.62
PDLIM7-211ENST00000504318 MSL1Q68DK7 614 aa18.94■□□□□ 0.62
PDLIM7-211ENST00000504318 NFATC2IPQ8NCF5 419 aa18.94■□□□□ 0.62
PDLIM7-211ENST00000504318 KCPQ6ZWJ8 1503 aa18.94■□□□□ 0.62
PDLIM7-211ENST00000504318 NLGN2Q8NFZ4 835 aa18.93■□□□□ 0.62
PDLIM7-211ENST00000504318 CNTNAP4Q9C0A0 1308 aa18.93■□□□□ 0.62
PDLIM7-211ENST00000504318 CHD4Q14839 1912 aa18.92■□□□□ 0.62
PDLIM7-211ENST00000504318 RNMTO43148 476 aaKnown RBP18.92■□□□□ 0.62
PDLIM7-211ENST00000504318 SLC52A2Q9HAB3 445 aa18.92■□□□□ 0.62
PDLIM7-211ENST00000504318 PPP2R1AP30153 589 aa18.91■□□□□ 0.62
PDLIM7-211ENST00000504318 CNGB1Q14028 1251 aaPredicted RBP18.91■□□□□ 0.62
PDLIM7-211ENST00000504318 RC3H1Q5TC82 1133 aaKnown RBP18.91■□□□□ 0.62
PDLIM7-211ENST00000504318 GNPATO15228 680 aa18.9■□□□□ 0.62
PDLIM7-211ENST00000504318 MSH5O43196 834 aa18.9■□□□□ 0.62
PDLIM7-211ENST00000504318 PHF14O94880 888 aa18.9■□□□□ 0.62
PDLIM7-211ENST00000504318 KIAA1551Q9HCM1 1747 aa18.9■□□□□ 0.62
PDLIM7-211ENST00000504318 KIF13BQ9NQT8 1826 aa18.9■□□□□ 0.62
PDLIM7-211ENST00000504318 RBM42Q9BTD8 480 aaKnown RBP18.89■□□□□ 0.61
PDLIM7-211ENST00000504318 RSPH6AQ9H0K4 717 aa18.89■□□□□ 0.61
PDLIM7-211ENST00000504318 PHACTR3Q96KR7 559 aa18.87■□□□□ 0.61
PDLIM7-211ENST00000504318 CEMIPQ8WUJ3 1361 aa18.86■□□□□ 0.61
PDLIM7-211ENST00000504318 PTCD1O75127 700 aaKnown RBP18.86■□□□□ 0.61
PDLIM7-211ENST00000504318 RPS6KA4O75676 772 aa18.86■□□□□ 0.61
PDLIM7-211ENST00000504318 YY1P25490 414 aa18.86■□□□□ 0.61
PDLIM7-211ENST00000504318 IL17REQ8NFR9 667 aa18.86■□□□□ 0.61
PDLIM7-211ENST00000504318 U2SURPO15042 1029 aaKnown RBP18.85■□□□□ 0.61
PDLIM7-211ENST00000504318 SLC39A6Q13433 755 aa18.85■□□□□ 0.61
PDLIM7-211ENST00000504318 ARHGEF1Q92888 912 aaKnown RBP18.85■□□□□ 0.61
PDLIM7-211ENST00000504318 ADRA2BP18089 450 aa18.84■□□□□ 0.61
PDLIM7-211ENST00000504318 CRKLP46109 303 aaKnown RBP18.84■□□□□ 0.61
PDLIM7-211ENST00000504318 INTS5Q6P9B9 1019 aaKnown RBP18.84■□□□□ 0.61
PDLIM7-211ENST00000504318 RTCBQ9Y3I0 505 aaKnown RBP18.84■□□□□ 0.61
PDLIM7-211ENST00000504318 CD2APQ9Y5K6 639 aa18.84■□□□□ 0.61
PDLIM7-211ENST00000504318 YBX3P16989 372 aaKnown RBP eCLIP18.83■□□□□ 0.6
PDLIM7-211ENST00000504318 GYS1P13807 737 aa18.82■□□□□ 0.6
PDLIM7-211ENST00000504318 PRKAR2BP31323 418 aa18.82■□□□□ 0.6
PDLIM7-211ENST00000504318 TRAPPC3LQ5T215 181 aa18.82■□□□□ 0.6
PDLIM7-211ENST00000504318 DNAJC10Q8IXB1 793 aa18.82■□□□□ 0.6
PDLIM7-211ENST00000504318 KLHL34Q8N239 644 aa18.82■□□□□ 0.6
PDLIM7-211ENST00000504318 GAS2L2Q8NHY3 880 aa18.82■□□□□ 0.6
PDLIM7-211ENST00000504318 DCAF8L1A6NGE4 600 aa18.81■□□□□ 0.6
PDLIM7-211ENST00000504318 GNAT3A8MTJ3 354 aa18.8■□□□□ 0.6
PDLIM7-211ENST00000504318 CYP19A1P11511 503 aaPredicted RBP18.8■□□□□ 0.6
PDLIM7-211ENST00000504318 CFAP53Q96M91 514 aa18.8■□□□□ 0.6
PDLIM7-211ENST00000504318 BRCA1P38398 1863 aaKnown RBP18.8■□□□□ 0.6
PDLIM7-211ENST00000504318 SOS1Q07889 1333 aaPredicted RBP18.79■□□□□ 0.6
PDLIM7-211ENST00000504318 DLG5Q8TDM6 1919 aa18.79■□□□□ 0.6
PDLIM7-211ENST00000504318 VSIG10Q8N0Z9 540 aa18.79■□□□□ 0.6
PDLIM7-211ENST00000504318 C10orf71Q711Q0 1435 aa18.79■□□□□ 0.6
PDLIM7-211ENST00000504318 USP42Q9H9J4 1324 aaKnown RBP18.78■□□□□ 0.6
PDLIM7-211ENST00000504318 MMP10P09238 476 aa18.78■□□□□ 0.6
PDLIM7-211ENST00000504318 PXDNLA1KZ92 1463 aa18.77■□□□□ 0.6
PDLIM7-211ENST00000504318 FCHSD2O94868 740 aa18.77■□□□□ 0.6
PDLIM7-211ENST00000504318 GPR162Q16538 588 aa18.77■□□□□ 0.6
PDLIM7-211ENST00000504318 SRP68Q9UHB9 627 aaKnown RBP18.77■□□□□ 0.6
PDLIM7-211ENST00000504318 N4BP2Q86UW6 1770 aaPredicted RBP18.77■□□□□ 0.6
PDLIM7-211ENST00000504318 NLGN1Q8N2Q7 840 aa18.76■□□□□ 0.59
PDLIM7-211ENST00000504318 CCDC87Q9NVE4 849 aa18.76■□□□□ 0.59
PDLIM7-211ENST00000504318 ZBTB1Q9Y2K1 713 aa18.76■□□□□ 0.59
PDLIM7-211ENST00000504318 NRXN2Q9P2S2 1712 aa18.76■□□□□ 0.59
PDLIM7-211ENST00000504318 U2AF1L5P0DN76 240 aaPredicted RBP18.75■□□□□ 0.59
PDLIM7-211ENST00000504318 U2AF1Q01081 240 aaKnown RBP eCLIP18.75■□□□□ 0.594e-6■■□□□ 12.1
PDLIM7-211ENST00000504318 ZNF790Q6PG37 636 aa18.75■□□□□ 0.59
PDLIM7-211ENST00000504318 ZNF784Q8NCA9 323 aaPredicted RBP18.75■□□□□ 0.59
PDLIM7-211ENST00000504318 ZNF496Q96IT1 587 aaPredicted RBP18.75■□□□□ 0.59
PDLIM7-211ENST00000504318 PLEKHF1Q96S99 279 aa18.75■□□□□ 0.59
PDLIM7-211ENST00000504318 NUDCQ9Y266 331 aa18.75■□□□□ 0.59
PDLIM7-211ENST00000504318 HEG1Q9ULI3 1381 aa18.74■□□□□ 0.59
PDLIM7-211ENST00000504318 RFC4P35249 363 aa18.74■□□□□ 0.59
PDLIM7-211ENST00000504318 FKBP8Q14318 412 aa18.74■□□□□ 0.59
PDLIM7-211ENST00000504318 COL15A1P39059 1388 aa18.73■□□□□ 0.59
PDLIM7-211ENST00000504318 AFDNP55196 1824 aaKnown RBP18.73■□□□□ 0.59
PDLIM7-211ENST00000504318 KCNQ3O43525 872 aa18.73■□□□□ 0.59
PDLIM7-211ENST00000504318 DDR1Q08345 913 aa18.73■□□□□ 0.59
PDLIM7-211ENST00000504318 BCL2L12Q9HB09 334 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms