RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 CDC14CA4D256 554 aa7.16□□□□□ -1.26
USP54-217ENST00000498213 ERVH48-1M5A8F1 160 aa7.16□□□□□ -1.26
USP54-217ENST00000498213 CTSOP43234 321 aaPredicted RBP7.16□□□□□ -1.26
USP54-217ENST00000498213 RELBQ01201 579 aa7.16□□□□□ -1.26
USP54-217ENST00000498213 RNFT1Q5M7Z0 435 aa7.16□□□□□ -1.26
USP54-217ENST00000498213 ZNF385CQ66K41 422 aaPredicted RBP7.16□□□□□ -1.26
USP54-217ENST00000498213 VWA5B2Q8N398 1253 aa7.16□□□□□ -1.26
USP54-217ENST00000498213 ESF1Q9H501 851 aaKnown RBP7.16□□□□□ -1.26
USP54-217ENST00000498213 FHAD1B1AJZ9 1412 aa7.16□□□□□ -1.26
USP54-217ENST00000498213 GIGYF1O75420 1035 aaPredicted RBP7.15□□□□□ -1.26
USP54-217ENST00000498213 ITGA6P23229 1130 aa7.15□□□□□ -1.26
USP54-217ENST00000498213 ABL2P42684 1182 aa7.15□□□□□ -1.26
USP54-217ENST00000498213 SV2AQ7L0J3 742 aa7.15□□□□□ -1.26
USP54-217ENST00000498213 ZNF784Q8NCA9 323 aaPredicted RBP7.15□□□□□ -1.26
USP54-217ENST00000498213 INSM2Q96T92 566 aaPredicted RBP7.15□□□□□ -1.26
USP54-217ENST00000498213 POLMQ9NP87 494 aaPredicted RBP7.15□□□□□ -1.26
USP54-217ENST00000498213 TMPRSS4Q9NRS4 437 aa7.15□□□□□ -1.26
USP54-217ENST00000498213 ADAMTS12P58397 1594 aa7.15□□□□□ -1.27
USP54-217ENST00000498213 ESPNB1AK53 854 aa7.14□□□□□ -1.27
USP54-217ENST00000498213 UBAP1LF5GYI3 381 aa7.14□□□□□ -1.27
USP54-217ENST00000498213 PTPRGP23470 1445 aa7.14□□□□□ -1.27
USP54-217ENST00000498213 EIF4G2P78344 907 aaKnown RBP eCLIP7.14□□□□□ -1.27
USP54-217ENST00000498213 MCM6Q14566 821 aa7.14□□□□□ -1.27
USP54-217ENST00000498213 CCDC125Q86Z20 511 aa7.14□□□□□ -1.27
USP54-217ENST00000498213 WWC1Q8IX03 1113 aa7.14□□□□□ -1.27
USP54-217ENST00000498213 GDPD2Q9HCC8 539 aa7.14□□□□□ -1.27
USP54-217ENST00000498213 CYLDQ9NQC7 956 aa7.14□□□□□ -1.27
USP54-217ENST00000498213 ADAMTSL3P82987 1691 aa7.13□□□□□ -1.27
USP54-217ENST00000498213 ABCA5Q8WWZ7 1642 aa7.13□□□□□ -1.27
USP54-217ENST00000498213 EPRSP07814 1512 aaKnown RBP7.13□□□□□ -1.27
USP54-217ENST00000498213 ABCC2Q92887 1545 aa7.13□□□□□ -1.27
USP54-217ENST00000498213 WHAMMQ8TF30 809 aa7.13□□□□□ -1.27
USP54-217ENST00000498213 ZNF395Q9H8N7 513 aaPredicted RBP7.13□□□□□ -1.27
USP54-217ENST00000498213 ABCA10Q8WWZ4 1543 aa7.12□□□□□ -1.27
USP54-217ENST00000498213 GPR37L1O60883 481 aa7.12□□□□□ -1.27
USP54-217ENST00000498213 SLURP2P0DP57 97 aa7.12□□□□□ -1.27
USP54-217ENST00000498213 TMEM132AQ24JP5 1023 aa7.12□□□□□ -1.27
USP54-217ENST00000498213 RAD21O60216 631 aa7.11□□□□□ -1.27
USP54-217ENST00000498213 ADH1AP07327 375 aa7.11□□□□□ -1.27
USP54-217ENST00000498213 HSPA1LP34931 641 aa7.11□□□□□ -1.27
USP54-217ENST00000498213 IRS1P35568 1242 aa7.11□□□□□ -1.27
USP54-217ENST00000498213 MARSP56192 900 aaKnown RBP7.11□□□□□ -1.27
USP54-217ENST00000498213 WASHC4Q2M389 1173 aa7.11□□□□□ -1.27
USP54-217ENST00000498213 RNF217Q8TC41 542 aa7.11□□□□□ -1.27
USP54-217ENST00000498213 PCDHB11Q9Y5F2 797 aa7.11□□□□□ -1.27
USP54-217ENST00000498213 MAP3K4Q9Y6R4 1608 aa7.11□□□□□ -1.27
USP54-217ENST00000498213 MADDQ8WXG6 1647 aa7.1□□□□□ -1.27
USP54-217ENST00000498213 ARHGEF15O94989 841 aa7.1□□□□□ -1.27
USP54-217ENST00000498213 VAC14Q08AM6 782 aa7.1□□□□□ -1.27
USP54-217ENST00000498213 FLIIQ13045 1269 aa7.1□□□□□ -1.27
USP54-217ENST00000498213 MED1Q15648 1581 aaPredicted RBP7.1□□□□□ -1.27
USP54-217ENST00000498213 SENP3-EIF4A1A0A087X0R7 540 aa7.09□□□□□ -1.27
USP54-217ENST00000498213 UBTFP17480 764 aaKnown RBP7.09□□□□□ -1.27
USP54-217ENST00000498213 SLFNL1Q499Z3 407 aa7.09□□□□□ -1.27
USP54-217ENST00000498213 CC2D2BQ6DHV5 1058 aa7.09□□□□□ -1.27
USP54-217ENST00000498213 ATP5J2-PTCD1G3V325 749 aa7.08□□□□□ -1.28
USP54-217ENST00000498213 LILRA1O75019 489 aa7.08□□□□□ -1.28
USP54-217ENST00000498213 RAPGEF3O95398 923 aa7.08□□□□□ -1.28
USP54-217ENST00000498213 MYCP01106 439 aaPredicted RBP7.08□□□□□ -1.28
USP54-217ENST00000498213 SEMA3FQ13275 785 aa7.08□□□□□ -1.28
USP54-217ENST00000498213 IRF5Q13568 498 aa7.08□□□□□ -1.28
USP54-217ENST00000498213 DNMT3AQ9Y6K1 912 aaPredicted RBP7.08□□□□□ -1.28
USP54-217ENST00000498213 CD109Q6YHK3 1445 aa7.08□□□□□ -1.28
USP54-217ENST00000498213 YEATS2Q9ULM3 1422 aa7.08□□□□□ -1.28
USP54-217ENST00000498213 ADAMTS2O95450 1211 aa7.07□□□□□ -1.28
USP54-217ENST00000498213 ADD1P35611 737 aaKnown RBP7.07□□□□□ -1.28
USP54-217ENST00000498213 PTGIRP43119 386 aa7.07□□□□□ -1.28
USP54-217ENST00000498213 FOXD4L5Q5VV16 416 aaPredicted RBP7.07□□□□□ -1.28
USP54-217ENST00000498213 GPAT2Q6NUI2 795 aa7.07□□□□□ -1.28
USP54-217ENST00000498213 CYP2U1Q7Z449 544 aa7.07□□□□□ -1.28
USP54-217ENST00000498213 SCARF2Q96GP6 870 aaPredicted RBP7.07□□□□□ -1.28
USP54-217ENST00000498213 CEP126Q9P2H0 1117 aa7.07□□□□□ -1.28
USP54-217ENST00000498213 RUSC2Q8N2Y8 1516 aa7.06□□□□□ -1.28
USP54-217ENST00000498213 MEN1O00255 615 aa7.06□□□□□ -1.28
USP54-217ENST00000498213 ERVK-9P63128 1117 aa7.06□□□□□ -1.28
USP54-217ENST00000498213 PIP4K2BP78356 416 aa7.06□□□□□ -1.28
USP54-217ENST00000498213 MAP3K10Q02779 954 aa7.06□□□□□ -1.28
USP54-217ENST00000498213 MLECQ14165 292 aa7.06□□□□□ -1.28
USP54-217ENST00000498213 KANK3Q6NY19 840 aa7.06□□□□□ -1.28
USP54-217ENST00000498213 LYPD4Q6UWN0 246 aa7.06□□□□□ -1.28
USP54-217ENST00000498213 LYSMD3Q7Z3D4 306 aa7.06□□□□□ -1.28
USP54-217ENST00000498213 RNF135Q8IUD6 432 aa7.06□□□□□ -1.28
USP54-217ENST00000498213 DOLKQ9UPQ8 538 aa7.06□□□□□ -1.28
USP54-217ENST00000498213 COG6Q9Y2V7 657 aa7.06□□□□□ -1.28
USP54-217ENST00000498213 KIAA0586Q9BVV6 1533 aa7.06□□□□□ -1.28
USP54-217ENST00000498213 RIMS1Q86UR5 1692 aaKnown RBP7.06□□□□□ -1.28
USP54-217ENST00000498213 SOX11P35716 441 aa7.05□□□□□ -1.28
USP54-217ENST00000498213 SRSF11Q05519 484 aaKnown RBP7.05□□□□□ -1.28
USP54-217ENST00000498213 NLRP3Q96P20 1036 aa7.05□□□□□ -1.28
USP54-217ENST00000498213 CUL7Q14999 1698 aa7.05□□□□□ -1.28
USP54-217ENST00000498213 IGHA1P01876 353 aa7.04□□□□□ -1.28
USP54-217ENST00000498213 CEBPAP49715 358 aaPredicted RBP7.04□□□□□ -1.28
USP54-217ENST00000498213 KDF1Q8NAX2 398 aaPredicted RBP7.04□□□□□ -1.28
USP54-217ENST00000498213 CUEDC1Q9NWM3 386 aaPredicted RBP7.04□□□□□ -1.28
USP54-217ENST00000498213 LTBP4Q8N2S1 1624 aa7.04□□□□□ -1.28
USP54-217ENST00000498213 TNIKQ9UKE5 1360 aa7.04□□□□□ -1.28
USP54-217ENST00000498213 BCORL1Q5H9F3 1711 aa7.04□□□□□ -1.28
USP54-217ENST00000498213 CELA2BP08218 269 aaPredicted RBP7.03□□□□□ -1.28
USP54-217ENST00000498213 RHOQP17081 205 aa7.03□□□□□ -1.28
USP54-217ENST00000498213 SCTRP47872 440 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms