RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 PZPP20742 1482 aa6.45□□□□□ -1.38
USP54-216ENST00000498143 SHROOM2Q13796 1616 aa6.45□□□□□ -1.38
USP54-216ENST00000498143 FMNL1O95466 1100 aaPredicted RBP6.44□□□□□ -1.38
USP54-216ENST00000498143 NEFHP12036 1026 aa6.44□□□□□ -1.38
USP54-216ENST00000498143 CNPY4Q8N129 248 aa6.44□□□□□ -1.38
USP54-216ENST00000498143 TMCO4Q5TGY1 634 aa6.44□□□□□ -1.38
USP54-216ENST00000498143 SYNE4Q8N205 404 aa6.44□□□□□ -1.38
USP54-216ENST00000498143 ABCC3O15438 1527 aa6.44□□□□□ -1.38
USP54-216ENST00000498143 ATP7AQ04656 1500 aa6.44□□□□□ -1.38
USP54-216ENST00000498143 IRX3P78415 501 aaPredicted RBP6.44□□□□□ -1.38
USP54-216ENST00000498143 MKRN3Q13064 507 aaKnown RBP6.44□□□□□ -1.38
USP54-216ENST00000498143 IFNLR1Q8IU57 520 aaPredicted RBP6.44□□□□□ -1.38
USP54-216ENST00000498143 FTSJ3Q8IY81 847 aaKnown RBP6.44□□□□□ -1.38
USP54-216ENST00000498143 ADGRB2O60241 1585 aa6.44□□□□□ -1.38
USP54-216ENST00000498143 EFCC1Q9HA90 598 aa6.44□□□□□ -1.38
USP54-216ENST00000498143 PDGFDQ9GZP0 370 aaPredicted RBP6.43□□□□□ -1.38
USP54-216ENST00000498143 ZNF652Q9Y2D9 606 aa6.43□□□□□ -1.38
USP54-216ENST00000498143 DLC1Q96QB1 1528 aa6.43□□□□□ -1.38
USP54-216ENST00000498143 WASLO00401 505 aaPredicted RBP6.43□□□□□ -1.38
USP54-216ENST00000498143 ANAPC15P60006 121 aa6.43□□□□□ -1.38
USP54-216ENST00000498143 COG3Q96JB2 828 aa6.43□□□□□ -1.38
USP54-216ENST00000498143 PNNQ9H307 717 aaKnown RBP6.43□□□□□ -1.38
USP54-216ENST00000498143 HSPA8P11142 646 aaKnown RBP6.43□□□□□ -1.38
USP54-216ENST00000498143 STK11IPQ8N1F8 1099 aa6.43□□□□□ -1.38
USP54-216ENST00000498143 TERF2IPQ9NYB0 399 aa6.43□□□□□ -1.38
USP54-216ENST00000498143 CCDC61Q9Y6R9 512 aa6.43□□□□□ -1.38
USP54-216ENST00000498143 SREBF2Q12772 1141 aa6.42□□□□□ -1.38
USP54-216ENST00000498143 KCNG4Q8TDN1 519 aa6.42□□□□□ -1.38
USP54-216ENST00000498143 NUDT16Q96DE0 195 aaKnown RBP6.42□□□□□ -1.38
USP54-216ENST00000498143 PDZRN3Q9UPQ7 1066 aa6.42□□□□□ -1.38
USP54-216ENST00000498143 PRDM15P57071 1507 aaPredicted RBP6.42□□□□□ -1.38
USP54-216ENST00000498143 C21orf2O43822 256 aa6.42□□□□□ -1.38
USP54-216ENST00000498143 FKTNO75072 461 aa6.42□□□□□ -1.38
USP54-216ENST00000498143 OGFOD1Q8N543 542 aa6.42□□□□□ -1.38
USP54-216ENST00000498143 FAM161BQ96MY7 647 aa6.42□□□□□ -1.38
USP54-216ENST00000498143 ARHGAP35Q9NRY4 1499 aa6.42□□□□□ -1.38
USP54-216ENST00000498143 TFRCP02786 760 aaKnown RBP6.42□□□□□ -1.38
USP54-216ENST00000498143 IGFBP4P22692 258 aa6.42□□□□□ -1.38
USP54-216ENST00000498143 CCDC93Q567U6 631 aa6.42□□□□□ -1.38
USP54-216ENST00000498143 RAET1EQ8TD07 263 aa6.42□□□□□ -1.38
USP54-216ENST00000498143 PUS7Q96PZ0 661 aaKnown RBP6.42□□□□□ -1.38
USP54-216ENST00000498143 RTEL1-TNFRSF6BF6WH68 1400 aa6.41□□□□□ -1.38
USP54-216ENST00000498143 DDNO94850 711 aaPredicted RBP6.41□□□□□ -1.38
USP54-216ENST00000498143 MCCP23508 829 aa6.41□□□□□ -1.38
USP54-216ENST00000498143 SSTR3P32745 418 aaPredicted RBP6.41□□□□□ -1.38
USP54-216ENST00000498143 FAM9BQ8IZU0 186 aa6.41□□□□□ -1.38
USP54-216ENST00000498143 NKX2-3Q8TAU0 364 aa6.41□□□□□ -1.38
USP54-216ENST00000498143 SETDB2Q96T68 719 aa6.41□□□□□ -1.38
USP54-216ENST00000498143 HSP90AB1P08238 724 aaKnown RBP6.41□□□□□ -1.38
USP54-216ENST00000498143 COL9A1P20849 921 aa6.41□□□□□ -1.38
USP54-216ENST00000498143 GAS2L1Q99501 681 aaPredicted RBP6.41□□□□□ -1.38
USP54-216ENST00000498143 EFCAB6Q5THR3 1501 aa6.41□□□□□ -1.38
USP54-216ENST00000498143 TRIOBPQ9H2D6 2365 aa6.41□□□□□ -1.38
USP54-216ENST00000498143 A0A087WZG4 1122 aa6.41□□□□□ -1.38
USP54-216ENST00000498143 DEFB123Q8N688 67 aa6.41□□□□□ -1.38
USP54-216ENST00000498143 ERO1AQ96HE7 468 aa6.41□□□□□ -1.38
USP54-216ENST00000498143 LRP6O75581 1613 aa6.41□□□□□ -1.38
USP54-216ENST00000498143 FRAT2O75474 233 aaPredicted RBP6.41□□□□□ -1.38
USP54-216ENST00000498143 RBM5P52756 815 aaKnown RBP eCLIP6.41□□□□□ -1.38
USP54-216ENST00000498143 NBPF6Q5VWK0 638 aa6.41□□□□□ -1.38
USP54-216ENST00000498143 ARMC9Q7Z3E5 817 aa6.41□□□□□ -1.38
USP54-216ENST00000498143 NBPF5PQ86XG9 351 aaPredicted RBP6.41□□□□□ -1.38
USP54-216ENST00000498143 COL23A1Q86Y22 540 aaPredicted RBP6.41□□□□□ -1.38
USP54-216ENST00000498143 IPO4Q8TEX9 1081 aaKnown RBP6.41□□□□□ -1.38
USP54-216ENST00000498143 NBPF4Q96M43 638 aa6.41□□□□□ -1.38
USP54-216ENST00000498143 E9PSI1 815 aa6.4□□□□□ -1.38
USP54-216ENST00000498143 NOL8Q76FK4 1167 aaKnown RBP6.4□□□□□ -1.38
USP54-216ENST00000498143 ZBTB33Q86T24 672 aa6.4□□□□□ -1.38
USP54-216ENST00000498143 RPGRIP1LQ68CZ1 1315 aa6.4□□□□□ -1.38
USP54-216ENST00000498143 RAPGEF6Q8TEU7 1601 aa6.4□□□□□ -1.38
USP54-216ENST00000498143 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.4□□□□□ -1.38
USP54-216ENST00000498143 DIP2CQ9Y2E4 1556 aa6.4□□□□□ -1.38
USP54-216ENST00000498143 ZNF697Q5TEC3 545 aa6.4□□□□□ -1.38
USP54-216ENST00000498143 CDC37L1Q7L3B6 337 aa6.4□□□□□ -1.38
USP54-216ENST00000498143 USP6P35125 1406 aa6.4□□□□□ -1.39
USP54-216ENST00000498143 C1orf167Q5SNV9 1468 aa6.4□□□□□ -1.39
USP54-216ENST00000498143 TNIP1Q15025 636 aa6.4□□□□□ -1.39
USP54-216ENST00000498143 CASC1Q6TDU7 716 aa6.4□□□□□ -1.39
USP54-216ENST00000498143 WBP1LQ9NX94 342 aa6.4□□□□□ -1.39
USP54-216ENST00000498143 ROCK1Q13464 1354 aa6.4□□□□□ -1.39
USP54-216ENST00000498143 C6orf229H3BNL8 230 aa6.39□□□□□ -1.39
USP54-216ENST00000498143 PPIP5K2O43314 1243 aa6.39□□□□□ -1.39
USP54-216ENST00000498143 VTI1AQ96AJ9 217 aa6.39□□□□□ -1.39
USP54-216ENST00000498143 CCDC141Q6ZP82 1450 aa6.39□□□□□ -1.39
USP54-216ENST00000498143 STARD3NLO95772 234 aa6.39□□□□□ -1.39
USP54-216ENST00000498143 ALDH1A1P00352 501 aa6.39□□□□□ -1.39
USP54-216ENST00000498143 WDR78Q5VTH9 848 aa6.39□□□□□ -1.39
USP54-216ENST00000498143 PAIP2Q9BPZ3 127 aaKnown RBP6.39□□□□□ -1.39
USP54-216ENST00000498143 SMG6Q86US8 1419 aaKnown RBP6.39□□□□□ -1.39
USP54-216ENST00000498143 PTGER2P43116 358 aa6.39□□□□□ -1.39
USP54-216ENST00000498143 KRT26Q7Z3Y9 468 aa6.39□□□□□ -1.39
USP54-216ENST00000498143 ANKRD24Q8TF21 1146 aa6.39□□□□□ -1.39
USP54-216ENST00000498143 CHMP4BQ9H444 224 aaKnown RBP6.39□□□□□ -1.39
USP54-216ENST00000498143 MYO1BO43795 1136 aa6.39□□□□□ -1.39
USP54-216ENST00000498143 RASSF7Q02833 373 aa6.39□□□□□ -1.39
USP54-216ENST00000498143 CNBD1Q8NA66 436 aa6.39□□□□□ -1.39
USP54-216ENST00000498143 SUPT20HQ8NEM7 779 aa6.39□□□□□ -1.39
USP54-216ENST00000498143 UBE2OQ9C0C9 1292 aaKnown RBP6.39□□□□□ -1.39
USP54-216ENST00000498143 KCNJ4P48050 445 aa6.38□□□□□ -1.39
USP54-216ENST00000498143 AAK1Q2M2I8 961 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms