RNA–Protein interactions for RNA: ENST00000497470.1

SCAMP3-209, Transcript of secretory carrier membrane protein 3, humanhuman

TSL 5

Gene SCAMP3, Length 845 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP3-209ENST00000497470 NFATC2IPQ8NCF5 419 aa25.72■■□□□ 1.71
SCAMP3-209ENST00000497470 BCL11BQ9C0K0 894 aaPredicted RBP25.72■■□□□ 1.71
SCAMP3-209ENST00000497470 PRIM1P49642 420 aaKnown RBP25.71■■□□□ 1.71
SCAMP3-209ENST00000497470 SLFN5Q08AF3 891 aa25.71■■□□□ 1.71
SCAMP3-209ENST00000497470 SOS1Q07889 1333 aaPredicted RBP25.7■■□□□ 1.71
SCAMP3-209ENST00000497470 THUMPD2Q9BTF0 503 aaKnown RBP25.7■■□□□ 1.7
SCAMP3-209ENST00000497470 SALL2Q9Y467 1007 aaPredicted RBP25.7■■□□□ 1.7
SCAMP3-209ENST00000497470 DOT1LQ8TEK3 1739 aa25.7■■□□□ 1.7
SCAMP3-209ENST00000497470 ITGB4P16144 1822 aa25.7■■□□□ 1.7
SCAMP3-209ENST00000497470 SBF2Q86WG5 1849 aa25.7■■□□□ 1.7
SCAMP3-209ENST00000497470 HMGB2P26583 209 aaKnown RBP25.69■■□□□ 1.7
SCAMP3-209ENST00000497470 PIGBQ92521 554 aa25.69■■□□□ 1.7
SCAMP3-209ENST00000497470 SMARCC1Q92922 1105 aaPredicted RBP25.69■■□□□ 1.7
SCAMP3-209ENST00000497470 BTBD11A6QL63 1104 aa25.68■■□□□ 1.7
SCAMP3-209ENST00000497470 ZNF790Q6PG37 636 aa25.66■■□□□ 1.7
SCAMP3-209ENST00000497470 CHMP4AQ9BY43 222 aa25.66■■□□□ 1.7
SCAMP3-209ENST00000497470 CT47B1P0C2W7 299 aaPredicted RBP25.65■■□□□ 1.7
SCAMP3-209ENST00000497470 CCDC125Q86Z20 511 aa25.65■■□□□ 1.7
SCAMP3-209ENST00000497470 TSPYL4Q9UJ04 414 aa25.65■■□□□ 1.7
SCAMP3-209ENST00000497470 PAPPAQ13219 1627 aa25.65■■□□□ 1.7
SCAMP3-209ENST00000497470 HEG1Q9ULI3 1381 aa25.65■■□□□ 1.7
SCAMP3-209ENST00000497470 KDM3BQ7LBC6 1761 aa25.64■■□□□ 1.7
SCAMP3-209ENST00000497470 VSIG10Q8N0Z9 540 aa25.64■■□□□ 1.7
SCAMP3-209ENST00000497470 HOXB7P09629 217 aa25.63■■□□□ 1.69
SCAMP3-209ENST00000497470 MBIPQ9NS73 344 aa25.63■■□□□ 1.69
SCAMP3-209ENST00000497470 DUSP27Q5VZP5 1158 aa25.62■■□□□ 1.69
SCAMP3-209ENST00000497470 TTC5Q8N0Z6 440 aa25.62■■□□□ 1.69
SCAMP3-209ENST00000497470 ZNF831Q5JPB2 1677 aa25.61■■□□□ 1.69
SCAMP3-209ENST00000497470 KCNQ2O43526 872 aa25.61■■□□□ 1.69
SCAMP3-209ENST00000497470 ZNF428Q96B54 188 aa25.61■■□□□ 1.69
SCAMP3-209ENST00000497470 SYTL4Q96C24 671 aaPredicted RBP25.61■■□□□ 1.69
SCAMP3-209ENST00000497470 ACSBG1Q96GR2 724 aa25.61■■□□□ 1.69
SCAMP3-209ENST00000497470 SPINK5Q9NQ38 1064 aaPredicted RBP25.61■■□□□ 1.69
SCAMP3-209ENST00000497470 ATG3Q9NT62 314 aa25.61■■□□□ 1.69
SCAMP3-209ENST00000497470 FANCIQ9NVI1 1328 aa25.61■■□□□ 1.69
SCAMP3-209ENST00000497470 UBR2Q8IWV8 1755 aa25.6■■□□□ 1.69
SCAMP3-209ENST00000497470 PLSCR1O15162 318 aa25.6■■□□□ 1.69
SCAMP3-209ENST00000497470 EIF4A1P60842 406 aaKnown RBP25.6■■□□□ 1.69
SCAMP3-209ENST00000497470 FAM182BQ5T319 152 aa25.6■■□□□ 1.69
SCAMP3-209ENST00000497470 FMNL2Q96PY5 1086 aa25.59■■□□□ 1.69
SCAMP3-209ENST00000497470 CDCA7LQ96GN5 454 aa25.58■■□□□ 1.69
SCAMP3-209ENST00000497470 YTHDC1Q96MU7 727 aaKnown RBP25.58■■□□□ 1.69
SCAMP3-209ENST00000497470 TEX13AQ9BXU3 409 aaPredicted RBP25.58■■□□□ 1.69
SCAMP3-209ENST00000497470 KAT6BQ8WYB5 2073 aa25.58■■□□□ 1.69
SCAMP3-209ENST00000497470 CICQ96RK0 1608 aaPredicted RBP25.58■■□□□ 1.69
SCAMP3-209ENST00000497470 SENP3-EIF4A1A0A087X0R7 540 aa25.57■■□□□ 1.68
SCAMP3-209ENST00000497470 ASAP1Q9ULH1 1129 aa25.57■■□□□ 1.68
SCAMP3-209ENST00000497470 LAS1LQ9Y4W2 734 aaKnown RBP25.57■■□□□ 1.68
SCAMP3-209ENST00000497470 BTAF1O14981 1849 aa25.56■■□□□ 1.68
SCAMP3-209ENST00000497470 TRIM37O94972 964 aa25.56■■□□□ 1.68
SCAMP3-209ENST00000497470 KCPQ6ZWJ8 1503 aa25.56■■□□□ 1.68
SCAMP3-209ENST00000497470 RGPD3A6NKT7 1758 aaPredicted RBP25.55■■□□□ 1.68
SCAMP3-209ENST00000497470 RGPD4Q7Z3J3 1758 aa25.55■■□□□ 1.68
SCAMP3-209ENST00000497470 PALLDQ8WX93 1383 aa25.55■■□□□ 1.68
SCAMP3-209ENST00000497470 SNRPA1P09661 255 aaKnown RBP25.54■■□□□ 1.68
SCAMP3-209ENST00000497470 ZNF496Q96IT1 587 aaPredicted RBP25.54■■□□□ 1.68
SCAMP3-209ENST00000497470 MIS18AQ9NYP9 233 aa25.54■■□□□ 1.68
SCAMP3-209ENST00000497470 GIGYF1O75420 1035 aaPredicted RBP25.53■■□□□ 1.68
SCAMP3-209ENST00000497470 SLC39A6Q13433 755 aa25.53■■□□□ 1.68
SCAMP3-209ENST00000497470 SLC27A3Q5K4L6 730 aa25.53■■□□□ 1.68
SCAMP3-209ENST00000497470 TSR2Q969E8 191 aaKnown RBP25.52■■□□□ 1.68
SCAMP3-209ENST00000497470 LOC102724428A0A0B4J2F2 783 aa25.51■■□□□ 1.67
SCAMP3-209ENST00000497470 KCNQ3O43525 872 aa25.51■■□□□ 1.67
SCAMP3-209ENST00000497470 SIK1P57059 783 aa25.51■■□□□ 1.67
SCAMP3-209ENST00000497470 LY75O60449 1722 aa25.51■■□□□ 1.67
SCAMP3-209ENST00000497470 TNS1Q9HBL0 1735 aaKnown RBP25.5■■□□□ 1.67
SCAMP3-209ENST00000497470 ERBB4Q15303 1308 aa25.49■■□□□ 1.67
SCAMP3-209ENST00000497470 EXOSC9Q06265 439 aaKnown RBP25.49■■□□□ 1.67
SCAMP3-209ENST00000497470 PTF1AQ7RTS3 328 aa25.49■■□□□ 1.67
SCAMP3-209ENST00000497470 SF3B2Q13435 895 aaKnown RBP25.48■■□□□ 1.67
SCAMP3-209ENST00000497470 TWISTNBQ3B726 338 aaPredicted RBP25.48■■□□□ 1.67
SCAMP3-209ENST00000497470 VAMP4O75379 141 aa25.47■■□□□ 1.67
SCAMP3-209ENST00000497470 C8orf58Q8NAV2 365 aa25.47■■□□□ 1.67
SCAMP3-209ENST00000497470 PTCD1O75127 700 aaKnown RBP25.46■■□□□ 1.67
SCAMP3-209ENST00000497470 APBA3O96018 575 aa25.46■■□□□ 1.67
SCAMP3-209ENST00000497470 STARD3NLO95772 234 aa25.45■■□□□ 1.66
SCAMP3-209ENST00000497470 BAG6P46379 1132 aa25.44■■□□□ 1.66
SCAMP3-209ENST00000497470 BRPF1P55201 1214 aaPredicted RBP25.44■■□□□ 1.66
SCAMP3-209ENST00000497470 ALDH1L2Q3SY69 923 aa25.44■■□□□ 1.66
SCAMP3-209ENST00000497470 RC3H1Q5TC82 1133 aaKnown RBP25.44■■□□□ 1.66
SCAMP3-209ENST00000497470 SLC4A9Q96Q91 983 aa25.44■■□□□ 1.66
SCAMP3-209ENST00000497470 RBM42Q9BTD8 480 aaKnown RBP25.43■■□□□ 1.66
SCAMP3-209ENST00000497470 ATP6V1AP38606 617 aa25.42■■□□□ 1.66
SCAMP3-209ENST00000497470 CCDC30Q5VVM6 783 aa25.42■■□□□ 1.66
SCAMP3-209ENST00000497470 TSPYL6Q8N831 410 aa25.42■■□□□ 1.66
SCAMP3-209ENST00000497470 LAMB4A4D0S4 1761 aa25.41■■□□□ 1.66
SCAMP3-209ENST00000497470 CAMKK2Q96RR4 588 aa25.41■■□□□ 1.66
SCAMP3-209ENST00000497470 CCNL1Q9UK58 526 aaPredicted RBP25.41■■□□□ 1.66
SCAMP3-209ENST00000497470 C5P01031 1676 aa25.41■■□□□ 1.66
SCAMP3-209ENST00000497470 CYP19A1P11511 503 aaPredicted RBP25.4■■□□□ 1.66
SCAMP3-209ENST00000497470 TXNRD1Q16881 649 aa25.4■■□□□ 1.66
SCAMP3-209ENST00000497470 CNTNAP4Q9C0A0 1308 aa25.39■■□□□ 1.66
SCAMP3-209ENST00000497470 CACNA1FO60840 1977 aa25.39■■□□□ 1.66
SCAMP3-209ENST00000497470 KRT24Q2M2I5 525 aa25.39■■□□□ 1.66
SCAMP3-209ENST00000497470 USP16Q9Y5T5 823 aa25.39■■□□□ 1.66
SCAMP3-209ENST00000497470 TJP1Q07157 1748 aa25.39■■□□□ 1.65
SCAMP3-209ENST00000497470 HDGFL1Q5TGJ6 251 aa25.38■■□□□ 1.65
SCAMP3-209ENST00000497470 PROM2Q8N271 834 aa25.38■■□□□ 1.65
SCAMP3-209ENST00000497470 UPF1Q92900 1129 aaKnown RBP eCLIP25.38■■□□□ 1.65
SCAMP3-209ENST00000497470 DBF4Q9UBU7 674 aaPredicted RBP25.38■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms