RNA–Protein interactions for RNA: ENST00000496855.1

SNX13-211, Transcript of sorting nexin 13, humanhuman

TSL 1 (best)

Gene SNX13, Length 1,499 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-211ENST00000496855 NXF1Q9UBU9 619 aaKnown RBP9.82□□□□□ -0.84
SNX13-211ENST00000496855 TLR1Q15399 786 aa9.81□□□□□ -0.84
SNX13-211ENST00000496855 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.81□□□□□ -0.84
SNX13-211ENST00000496855 SLC4A9Q96Q91 983 aa9.81□□□□□ -0.84
SNX13-211ENST00000496855 SERTAD1Q9UHV2 236 aa9.81□□□□□ -0.84
SNX13-211ENST00000496855 SPATA31C2B4DYI2 1134 aa9.8□□□□□ -0.84
SNX13-211ENST00000496855 RHOQP17081 205 aa9.8□□□□□ -0.84
SNX13-211ENST00000496855 SIX5Q8N196 739 aa9.8□□□□□ -0.84
SNX13-211ENST00000496855 ZNF594Q96JF6 807 aaPredicted RBP9.8□□□□□ -0.84
SNX13-211ENST00000496855 ZNF358Q9NW07 568 aa9.8□□□□□ -0.84
SNX13-211ENST00000496855 TERTO14746 1132 aaKnown RBP9.79□□□□□ -0.84
SNX13-211ENST00000496855 BACH1O14867 736 aa9.79□□□□□ -0.84
SNX13-211ENST00000496855 SMTNP53814 917 aa9.79□□□□□ -0.84
SNX13-211ENST00000496855 POU4F2Q12837 409 aa9.79□□□□□ -0.84
SNX13-211ENST00000496855 LARP1Q6PKG0 1096 aaKnown RBP9.79□□□□□ -0.84
SNX13-211ENST00000496855 SENP3-EIF4A1A0A087X0R7 540 aa9.79□□□□□ -0.84
SNX13-211ENST00000496855 SLC35F4A4IF30 521 aa9.79□□□□□ -0.84
SNX13-211ENST00000496855 GTF2E1P29083 439 aaPredicted RBP9.79□□□□□ -0.84
SNX13-211ENST00000496855 CRTC2Q53ET0 693 aaPredicted RBP9.79□□□□□ -0.84
SNX13-211ENST00000496855 TMEM214Q6NUQ4 689 aaKnown RBP9.79□□□□□ -0.84
SNX13-211ENST00000496855 NBPF10Q6P3W6 841 aaKnown RBP9.79□□□□□ -0.84
SNX13-211ENST00000496855 NPAS3Q8IXF0 933 aa9.79□□□□□ -0.84
SNX13-211ENST00000496855 CCDC82Q8N4S0 544 aa9.79□□□□□ -0.84
SNX13-211ENST00000496855 NBPF15Q8N660 670 aa9.79□□□□□ -0.84
SNX13-211ENST00000496855 FAM196BA6NMK8 535 aa9.78□□□□□ -0.84
SNX13-211ENST00000496855 DKK1O94907 266 aa9.78□□□□□ -0.84
SNX13-211ENST00000496855 PTK7Q13308 1070 aa9.78□□□□□ -0.84
SNX13-211ENST00000496855 MTFR1Q15390 333 aa9.78□□□□□ -0.84
SNX13-211ENST00000496855 WDR44Q5JSH3 913 aa9.78□□□□□ -0.84
SNX13-211ENST00000496855 TAS1R3Q7RTX0 852 aa9.78□□□□□ -0.84
SNX13-211ENST00000496855 PPARGC1BQ86YN6 1023 aaKnown RBP9.78□□□□□ -0.84
SNX13-211ENST00000496855 A6NJY4 79 aa9.77□□□□□ -0.85
SNX13-211ENST00000496855 PPFIA3O75145 1194 aa9.77□□□□□ -0.85
SNX13-211ENST00000496855 VEGFBP49765 207 aa9.77□□□□□ -0.85
SNX13-211ENST00000496855 CDCA8Q53HL2 280 aa9.77□□□□□ -0.85
SNX13-211ENST00000496855 GNASQ5JWF2 1037 aa9.77□□□□□ -0.85
SNX13-211ENST00000496855 CCDC155Q8N6L0 562 aa9.77□□□□□ -0.85
SNX13-211ENST00000496855 RBM19Q9Y4C8 960 aaKnown RBP9.77□□□□□ -0.85
SNX13-211ENST00000496855 USP17L15C9J2P7 530 aa9.76□□□□□ -0.85
SNX13-211ENST00000496855 USP17L10C9JJH3 530 aa9.76□□□□□ -0.85
SNX13-211ENST00000496855 USP17L13C9JLJ4 530 aa9.76□□□□□ -0.85
SNX13-211ENST00000496855 USP17L12C9JPN9 530 aa9.76□□□□□ -0.85
SNX13-211ENST00000496855 USP17L11C9JVI0 530 aa9.76□□□□□ -0.85
SNX13-211ENST00000496855 USP17L21D6R901 530 aa9.76□□□□□ -0.85
SNX13-211ENST00000496855 USP17L18D6R9N7 530 aa9.76□□□□□ -0.85
SNX13-211ENST00000496855 USP17L22D6RA61 530 aa9.76□□□□□ -0.85
SNX13-211ENST00000496855 USP17L17D6RBQ6 530 aa9.76□□□□□ -0.85
SNX13-211ENST00000496855 USP17L19D6RCP7 530 aa9.76□□□□□ -0.85
SNX13-211ENST00000496855 USP17L20D6RJB6 530 aa9.76□□□□□ -0.85
SNX13-211ENST00000496855 USP17L24Q0WX57 530 aa9.76□□□□□ -0.85
SNX13-211ENST00000496855 NFX1Q12986 1120 aaKnown RBP9.76□□□□□ -0.85
SNX13-211ENST00000496855 H3BM21 787 aa9.75□□□□□ -0.85
SNX13-211ENST00000496855 SUPT5HO00267 1087 aaKnown RBP9.75□□□□□ -0.85
SNX13-211ENST00000496855 SRPK2P78362 688 aaKnown RBP9.75□□□□□ -0.85
SNX13-211ENST00000496855 RHBDD1Q8TEB9 315 aa9.75□□□□□ -0.85
SNX13-211ENST00000496855 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.74□□□□□ -0.85
SNX13-211ENST00000496855 SFI1A8K8P3 1242 aa9.74□□□□□ -0.85
SNX13-211ENST00000496855 M0R2N6 131 aa9.74□□□□□ -0.85
SNX13-211ENST00000496855 CDK2AP1O14519 115 aa9.74□□□□□ -0.85
SNX13-211ENST00000496855 SEC13P55735 322 aa9.74□□□□□ -0.85
SNX13-211ENST00000496855 C4orf17Q53FE4 359 aa9.74□□□□□ -0.85
SNX13-211ENST00000496855 ANKMY2Q8IV38 441 aa9.74□□□□□ -0.85
SNX13-211ENST00000496855 SLC16A10Q8TF71 515 aa9.74□□□□□ -0.85
SNX13-211ENST00000496855 IQSEC3Q9UPP2 1182 aaPredicted RBP9.74□□□□□ -0.85
SNX13-211ENST00000496855 PHKA2P46019 1235 aa9.73□□□□□ -0.85
SNX13-211ENST00000496855 EPHA4P54764 986 aa9.73□□□□□ -0.85
SNX13-211ENST00000496855 DPYDQ12882 1025 aa9.73□□□□□ -0.85
SNX13-211ENST00000496855 TNS4Q8IZW8 715 aa9.73□□□□□ -0.85
SNX13-211ENST00000496855 TIMMDC1Q9NPL8 285 aa9.73□□□□□ -0.85
SNX13-211ENST00000496855 SCHIP1Q9P0W5 487 aaPredicted RBP9.73□□□□□ -0.85
SNX13-211ENST00000496855 DYRK1BQ9Y463 629 aa9.73□□□□□ -0.85
SNX13-211ENST00000496855 WFS1O76024 890 aa9.72□□□□□ -0.85
SNX13-211ENST00000496855 TREML4Q6UXN2 200 aa9.72□□□□□ -0.85
SNX13-211ENST00000496855 USP3Q9Y6I4 520 aa9.72□□□□□ -0.85
SNX13-211ENST00000496855 ITGA6P23229 1130 aa9.72□□□□□ -0.85
SNX13-211ENST00000496855 FOXK2Q01167 660 aa9.72□□□□□ -0.85
SNX13-211ENST00000496855 ZNF295-AS1Q8N0V1 137 aa9.72□□□□□ -0.85
SNX13-211ENST00000496855 TSEN2Q8NCE0 465 aaKnown RBP9.72□□□□□ -0.85
SNX13-211ENST00000496855 PBXIP1Q96AQ6 731 aa9.72□□□□□ -0.85
SNX13-211ENST00000496855 ARXQ96QS3 562 aa9.72□□□□□ -0.85
SNX13-211ENST00000496855 NIFKQ9BYG3 293 aaKnown RBP9.72□□□□□ -0.85
SNX13-211ENST00000496855 PLA2G4AP47712 749 aa9.7□□□□□ -0.86
SNX13-211ENST00000496855 SLC9A9Q8IVB4 645 aa9.7□□□□□ -0.86
SNX13-211ENST00000496855 A0A1B0GTH6 734 aa9.69□□□□□ -0.86
SNX13-211ENST00000496855 LCE2AQ5TA79 106 aaPredicted RBP9.69□□□□□ -0.86
SNX13-211ENST00000496855 IRF7Q92985 503 aa9.69□□□□□ -0.86
SNX13-211ENST00000496855 GAS2L1Q99501 681 aaPredicted RBP9.69□□□□□ -0.86
SNX13-211ENST00000496855 CABP1Q9NZU7 370 aa9.69□□□□□ -0.86
SNX13-211ENST00000496855 NOVA2Q9UNW9 492 aaKnown RBP9.69□□□□□ -0.86
SNX13-211ENST00000496855 ERBB4Q15303 1308 aa9.68□□□□□ -0.86
SNX13-211ENST00000496855 ATG7O95352 703 aa9.68□□□□□ -0.86
SNX13-211ENST00000496855 F11P03951 625 aa9.68□□□□□ -0.86
SNX13-211ENST00000496855 ELOAQ14241 798 aaKnown RBP9.68□□□□□ -0.86
SNX13-211ENST00000496855 TBCELQ5QJ74 424 aa9.68□□□□□ -0.86
SNX13-211ENST00000496855 LCE2CQ5TA81 110 aa9.68□□□□□ -0.86
SNX13-211ENST00000496855 FAM200AQ8TCP9 573 aa9.68□□□□□ -0.86
SNX13-211ENST00000496855 NANOS1Q8WY41 292 aaKnown RBP9.68□□□□□ -0.86
SNX13-211ENST00000496855 TSPAN10Q9H1Z9 355 aaPredicted RBP9.68□□□□□ -0.86
SNX13-211ENST00000496855 VSIG8P0DPA2 414 aa9.67□□□□□ -0.86
SNX13-211ENST00000496855 RIPOR1Q6ZS17 1223 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms