RNA–Protein interactions for RNA: ENST00000496855.1

SNX13-211, Transcript of sorting nexin 13, humanhuman

TSL 1 (best)

Gene SNX13, Length 1,499 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-211ENST00000496855 AEBP2Q6ZN18 517 aaPredicted RBP27.38■■□□□ 1.97
SNX13-211ENST00000496855 CHIC1Q5VXU3 224 aa26.7■■□□□ 1.87
SNX13-211ENST00000496855 PHF23Q9BUL5 403 aaPredicted RBP23.49■■□□□ 1.35
SNX13-211ENST00000496855 SENP3Q9H4L4 574 aaPredicted RBP23.24■■□□□ 1.31
SNX13-211ENST00000496855 PLPPR3Q6T4P5 718 aa21.67■■□□□ 1.06
SNX13-211ENST00000496855 FOXD1Q16676 465 aa21.57■■□□□ 1.04
SNX13-211ENST00000496855 PPP6R1Q9UPN7 881 aa20.73■□□□□ 0.91
SNX13-211ENST00000496855 ADRA2BP18089 450 aa20.7■□□□□ 0.9
SNX13-211ENST00000496855 PIAS4Q8N2W9 510 aaPredicted RBP20.33■□□□□ 0.85
SNX13-211ENST00000496855 MSH5O43196 834 aa19.91■□□□□ 0.78
SNX13-211ENST00000496855 PPP4R3CPQ6ZMV5 832 aa19.09■□□□□ 0.65
SNX13-211ENST00000496855 SCAF1Q9H7N4 1312 aaKnown RBP18.95■□□□□ 0.62
SNX13-211ENST00000496855 MAPK8IP2Q13387 824 aaPredicted RBP18.79■□□□□ 0.6
SNX13-211ENST00000496855 KCNA4P22459 653 aa18.61■□□□□ 0.57
SNX13-211ENST00000496855 NCBP3Q53F19 620 aaKnown RBP18.58■□□□□ 0.56
SNX13-211ENST00000496855 CNKSR2Q8WXI2 1034 aa18.57■□□□□ 0.56
SNX13-211ENST00000496855 DMRT2Q9Y5R5 561 aa18.55■□□□□ 0.56
SNX13-211ENST00000496855 NPM3O75607 178 aaKnown RBP18.31■□□□□ 0.52
SNX13-211ENST00000496855 RNF216Q9NWF9 866 aaPredicted RBP18.21■□□□□ 0.51
SNX13-211ENST00000496855 POTEDQ86YR6 584 aa18.19■□□□□ 0.5
SNX13-211ENST00000496855 HOXD11P31277 338 aaPredicted RBP18.15■□□□□ 0.5
SNX13-211ENST00000496855 DNAJC5BQ9UF47 199 aa17.8■□□□□ 0.44
SNX13-211ENST00000496855 DCAF8L1A6NGE4 600 aa17.73■□□□□ 0.43
SNX13-211ENST00000496855 SLC4A1APQ9BWU0 796 aaKnown RBP17.71■□□□□ 0.43
SNX13-211ENST00000496855 SLC4A2P04920 1241 aa17.3■□□□□ 0.36
SNX13-211ENST00000496855 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.29■□□□□ 0.36
SNX13-211ENST00000496855 EHMT2Q96KQ7 1210 aa17.16■□□□□ 0.34
SNX13-211ENST00000496855 FOXD4L1Q9NU39 408 aa17.13■□□□□ 0.33
SNX13-211ENST00000496855 ZBTB22O15209 634 aa17.12■□□□□ 0.33
SNX13-211ENST00000496855 RNF39Q9H2S5 420 aa17.05■□□□□ 0.32
SNX13-211ENST00000496855 U3KPZ7 1027 aaPredicted RBP17.01■□□□□ 0.31
SNX13-211ENST00000496855 CSRNP3Q8WYN3 585 aa16.99■□□□□ 0.31
SNX13-211ENST00000496855 MYCNP04198 464 aaPredicted RBP16.92■□□□□ 0.3
SNX13-211ENST00000496855 C1QBPQ07021 282 aaKnown RBP16.86■□□□□ 0.29
SNX13-211ENST00000496855 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.79■□□□□ 0.28
SNX13-211ENST00000496855 HNRNPUL2Q1KMD3 747 aaKnown RBP16.79■□□□□ 0.28
SNX13-211ENST00000496855 SAMD1Q6SPF0 538 aaPredicted RBP16.73■□□□□ 0.27
SNX13-211ENST00000496855 CACNB1Q02641 598 aaPredicted RBP16.63■□□□□ 0.25
SNX13-211ENST00000496855 APLP2Q06481 763 aa16.61■□□□□ 0.25
SNX13-211ENST00000496855 ATXN8OSP0DMR3 200 aa16.55■□□□□ 0.24
SNX13-211ENST00000496855 SPINK5Q9NQ38 1064 aaPredicted RBP16.54■□□□□ 0.24
SNX13-211ENST00000496855 CAPN15O75808 1086 aa16.48■□□□□ 0.23
SNX13-211ENST00000496855 ATF5Q9Y2D1 282 aaPredicted RBP16.47■□□□□ 0.23
SNX13-211ENST00000496855 TRHP20396 242 aaPredicted RBP16.39■□□□□ 0.21
SNX13-211ENST00000496855 ZNF219Q9P2Y4 722 aaPredicted RBP16.39■□□□□ 0.21
SNX13-211ENST00000496855 DSG3P32926 999 aa16.22■□□□□ 0.19
SNX13-211ENST00000496855 ABCB7O75027 752 aa16.16■□□□□ 0.18
SNX13-211ENST00000496855 POLA2Q14181 598 aa16.12■□□□□ 0.17
SNX13-211ENST00000496855 ZBTB12Q9Y330 459 aaPredicted RBP15.86■□□□□ 0.13
SNX13-211ENST00000496855 FBLN2P98095 1184 aa15.78■□□□□ 0.12
SNX13-211ENST00000496855 MKRN4PQ13434 485 aaPredicted RBP15.75■□□□□ 0.11
SNX13-211ENST00000496855 OSCARQ8IYS5 282 aa15.57■□□□□ 0.08
SNX13-211ENST00000496855 RBM42Q9BTD8 480 aaKnown RBP15.46■□□□□ 0.06
SNX13-211ENST00000496855 SPDYE2BA6NHP3 402 aa15.43■□□□□ 0.06
SNX13-211ENST00000496855 SPDYE6P0CI01 402 aa15.43■□□□□ 0.06
SNX13-211ENST00000496855 SPDYE2Q495Y8 402 aa15.43■□□□□ 0.06
SNX13-211ENST00000496855 SPDYE4A6NLX3 237 aa15.38■□□□□ 0.05
SNX13-211ENST00000496855 FKBP8Q14318 412 aa15.36■□□□□ 0.05
SNX13-211ENST00000496855 ZNF692Q9BU19 519 aaPredicted RBP15.36■□□□□ 0.05
SNX13-211ENST00000496855 SSUH2Q9Y2M2 353 aa15.31■□□□□ 0.04
SNX13-211ENST00000496855 AKT1S1Q96B36 256 aa15.26■□□□□ 0.03
SNX13-211ENST00000496855 PABPN1Q86U42 306 aaKnown RBP eCLIP15.15■□□□□ 0.02
SNX13-211ENST00000496855 PROM2Q8N271 834 aa15.13■□□□□ 0.01
SNX13-211ENST00000496855 REM2Q8IYK8 340 aaPredicted RBP15.11■□□□□ 0.01
SNX13-211ENST00000496855 SPDYE1Q8NFV5 336 aaPredicted RBP14.98□□□□□ -0.01
SNX13-211ENST00000496855 PITPNM1O00562 1244 aa14.94□□□□□ -0.02
SNX13-211ENST00000496855 STAG3Q9UJ98 1225 aa14.9□□□□□ -0.02
SNX13-211ENST00000496855 CLEC11AQ9Y240 323 aa14.9□□□□□ -0.02
SNX13-211ENST00000496855 FBXO3Q9UK99 471 aa14.83□□□□□ -0.03
SNX13-211ENST00000496855 CHRDL2Q6WN34 429 aa14.82□□□□□ -0.04
SNX13-211ENST00000496855 PRR29P0C7W0 189 aa14.77□□□□□ -0.04
SNX13-211ENST00000496855 FXR2P51116 673 aaKnown RBP eCLIP14.67□□□□□ -0.06
SNX13-211ENST00000496855 PIP4P2Q8N4L2 257 aa14.63□□□□□ -0.07
SNX13-211ENST00000496855 VASPP50552 380 aaPredicted RBP14.63□□□□□ -0.07
SNX13-211ENST00000496855 MIER1Q8N108 512 aa14.58□□□□□ -0.08
SNX13-211ENST00000496855 CREBZFQ9NS37 354 aa14.58□□□□□ -0.08
SNX13-211ENST00000496855 PRKAR2AP13861 404 aaKnown RBP14.57□□□□□ -0.08
SNX13-211ENST00000496855 PLCD3Q8N3E9 789 aa14.56□□□□□ -0.08
SNX13-211ENST00000496855 CHADLQ6NUI6 762 aa14.54□□□□□ -0.08
SNX13-211ENST00000496855 PLEKHG5O94827 1062 aa14.52□□□□□ -0.08
SNX13-211ENST00000496855 MNX1P50219 401 aaPredicted RBP14.43□□□□□ -0.1
SNX13-211ENST00000496855 IFNLR1Q8IU57 520 aaPredicted RBP14.43□□□□□ -0.1
SNX13-211ENST00000496855 FARP1Q9Y4F1 1045 aaPredicted RBP14.42□□□□□ -0.1
SNX13-211ENST00000496855 ZBTB47Q9UFB7 747 aaPredicted RBP14.41□□□□□ -0.1
SNX13-211ENST00000496855 POTEHQ6S545 545 aa14.4□□□□□ -0.1
SNX13-211ENST00000496855 KLHL34Q8N239 644 aa14.38□□□□□ -0.11
SNX13-211ENST00000496855 NPM1P06748 294 aaKnown RBP eCLIP14.33□□□□□ -0.12
SNX13-211ENST00000496855 SPOCK2Q92563 424 aa14.26□□□□□ -0.13
SNX13-211ENST00000496855 NUBP1P53384 320 aa14.22□□□□□ -0.13
SNX13-211ENST00000496855 C19orf67A6NJJ6 358 aa14.17□□□□□ -0.14
SNX13-211ENST00000496855 RASEFQ8IZ41 740 aa14.17□□□□□ -0.14
SNX13-211ENST00000496855 HAX1O00165 279 aa14.16□□□□□ -0.14
SNX13-211ENST00000496855 CD44P16070 742 aaKnown RBP14.13□□□□□ -0.15
SNX13-211ENST00000496855 FAM212AQ96EL1 285 aa14.11□□□□□ -0.15
SNX13-211ENST00000496855 PAK3O75914 559 aaPredicted RBP14.1□□□□□ -0.15
SNX13-211ENST00000496855 TSPYL2Q9H2G4 693 aaPredicted RBP14.1□□□□□ -0.15
SNX13-211ENST00000496855 DCAF8Q5TAQ9 597 aa14.07□□□□□ -0.16
SNX13-211ENST00000496855 GSE1Q14687 1217 aa14.06□□□□□ -0.16
SNX13-211ENST00000496855 ZRANB1Q9UGI0 708 aa14.06□□□□□ -0.16
SNX13-211ENST00000496855 EVX2Q03828 476 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms