RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.22■□□□□ 0.35
PTPRF-214ENST00000496043 PHF14O94880 888 aa17.22■□□□□ 0.35
PTPRF-214ENST00000496043 SSFA2P28290 1259 aa17.22■□□□□ 0.35
PTPRF-214ENST00000496043 ITPK1Q13572 414 aa17.22■□□□□ 0.35
PTPRF-214ENST00000496043 NFATC2IPQ8NCF5 419 aa17.22■□□□□ 0.35
PTPRF-214ENST00000496043 KDRP35968 1356 aa17.22■□□□□ 0.35
PTPRF-214ENST00000496043 HMOX1P09601 288 aa17.21■□□□□ 0.35
PTPRF-214ENST00000496043 GPR162Q16538 588 aa17.21■□□□□ 0.35
PTPRF-214ENST00000496043 AKAP4Q5JQC9 854 aa17.21■□□□□ 0.35
PTPRF-214ENST00000496043 SMIM5Q71RC9 77 aa17.2■□□□□ 0.34
PTPRF-214ENST00000496043 GNPATO15228 680 aa17.19■□□□□ 0.34
PTPRF-214ENST00000496043 RC3H1Q5TC82 1133 aaKnown RBP17.19■□□□□ 0.34
PTPRF-214ENST00000496043 AMIGO3Q86WK7 504 aa17.19■□□□□ 0.34
PTPRF-214ENST00000496043 C5P01031 1676 aa17.18■□□□□ 0.34
PTPRF-214ENST00000496043 TRAPPC3LQ5T215 181 aa17.18■□□□□ 0.34
PTPRF-214ENST00000496043 SLC4A9Q96Q91 983 aa17.18■□□□□ 0.34
PTPRF-214ENST00000496043 RTCBQ9Y3I0 505 aaKnown RBP17.18■□□□□ 0.34
PTPRF-214ENST00000496043 KDM6AO15550 1401 aaPredicted RBP17.17■□□□□ 0.34
PTPRF-214ENST00000496043 PTCD1O75127 700 aaKnown RBP17.17■□□□□ 0.34
PTPRF-214ENST00000496043 LGR6Q9HBX8 967 aa17.17■□□□□ 0.34
PTPRF-214ENST00000496043 CD2APQ9Y5K6 639 aa17.17■□□□□ 0.34
PTPRF-214ENST00000496043 TUBGCP6Q96RT7 1819 aa17.17■□□□□ 0.34
PTPRF-214ENST00000496043 C4BP0C0L5 1744 aa17.16■□□□□ 0.34
PTPRF-214ENST00000496043 U2SURPO15042 1029 aaKnown RBP17.16■□□□□ 0.34
PTPRF-214ENST00000496043 MTHFSDQ2M296 383 aaKnown RBP17.16■□□□□ 0.34
PTPRF-214ENST00000496043 PELP1Q8IZL8 1130 aaKnown RBP17.16■□□□□ 0.34
PTPRF-214ENST00000496043 NLGN2Q8NFZ4 835 aa17.16■□□□□ 0.34
PTPRF-214ENST00000496043 TAF1LQ8IZX4 1826 aa17.15■□□□□ 0.34
PTPRF-214ENST00000496043 RNMTO43148 476 aaKnown RBP17.15■□□□□ 0.34
PTPRF-214ENST00000496043 CFAP53Q96M91 514 aa17.15■□□□□ 0.34
PTPRF-214ENST00000496043 SLC52A2Q9HAB3 445 aa17.15■□□□□ 0.34
PTPRF-214ENST00000496043 COL24A1Q17RW2 1714 aa17.14■□□□□ 0.33
PTPRF-214ENST00000496043 RPS6KA4O75676 772 aa17.14■□□□□ 0.33
PTPRF-214ENST00000496043 ADRA2BP18089 450 aa17.13■□□□□ 0.33
PTPRF-214ENST00000496043 ARHGEF1Q92888 912 aaKnown RBP17.13■□□□□ 0.33
PTPRF-214ENST00000496043 GRIN3BO60391 1043 aa17.12■□□□□ 0.33
PTPRF-214ENST00000496043 RFC4P35249 363 aa17.12■□□□□ 0.33
PTPRF-214ENST00000496043 NLGN1Q8N2Q7 840 aa17.12■□□□□ 0.33
PTPRF-214ENST00000496043 NUDCQ9Y266 331 aa17.12■□□□□ 0.33
PTPRF-214ENST00000496043 CNTNAP4Q9C0A0 1308 aa17.12■□□□□ 0.33
PTPRF-214ENST00000496043 CRKLP46109 303 aaKnown RBP17.1■□□□□ 0.33
PTPRF-214ENST00000496043 GAS2L2Q8NHY3 880 aa17.1■□□□□ 0.33
PTPRF-214ENST00000496043 PPP2R1AP30153 589 aa17.09■□□□□ 0.33
PTPRF-214ENST00000496043 SLC39A6Q13433 755 aa17.09■□□□□ 0.33
PTPRF-214ENST00000496043 UBR3Q6ZT12 1888 aa17.08■□□□□ 0.33
PTPRF-214ENST00000496043 GNAT3A8MTJ3 354 aa17.08■□□□□ 0.32
PTPRF-214ENST00000496043 MMP10P09238 476 aa17.08■□□□□ 0.32
PTPRF-214ENST00000496043 YBX3P16989 372 aaKnown RBP eCLIP17.07■□□□□ 0.324e-7■□□□□ 8.4
PTPRF-214ENST00000496043 ZNF784Q8NCA9 323 aaPredicted RBP17.07■□□□□ 0.32
PTPRF-214ENST00000496043 GYS1P13807 737 aa17.06■□□□□ 0.32
PTPRF-214ENST00000496043 TEFQ10587 303 aa17.06■□□□□ 0.32
PTPRF-214ENST00000496043 INTS5Q6P9B9 1019 aaKnown RBP17.06■□□□□ 0.32
PTPRF-214ENST00000496043 DNAJC10Q8IXB1 793 aa17.06■□□□□ 0.32
PTPRF-214ENST00000496043 IL17REQ8NFR9 667 aa17.06■□□□□ 0.32
PTPRF-214ENST00000496043 COL3A1P02461 1466 aaPredicted RBP17.05■□□□□ 0.32
PTPRF-214ENST00000496043 ZNF831Q5JPB2 1677 aa17.05■□□□□ 0.32
PTPRF-214ENST00000496043 U2AF1L5P0DN76 240 aaPredicted RBP17.05■□□□□ 0.32
PTPRF-214ENST00000496043 PRKAR2BP31323 418 aa17.05■□□□□ 0.32
PTPRF-214ENST00000496043 U2AF1Q01081 240 aaKnown RBP eCLIP17.05■□□□□ 0.32
PTPRF-214ENST00000496043 VSIG10Q8N0Z9 540 aa17.05■□□□□ 0.32
PTPRF-214ENST00000496043 FCHSD2O94868 740 aa17.04■□□□□ 0.32
PTPRF-214ENST00000496043 CYP19A1P11511 503 aaPredicted RBP17.04■□□□□ 0.32
PTPRF-214ENST00000496043 TTC5Q8N0Z6 440 aa17.04■□□□□ 0.32
PTPRF-214ENST00000496043 PHACTR3Q96KR7 559 aa17.04■□□□□ 0.32
PTPRF-214ENST00000496043 RSPH6AQ9H0K4 717 aa17.04■□□□□ 0.32
PTPRF-214ENST00000496043 CCDC87Q9NVE4 849 aa17.04■□□□□ 0.32
PTPRF-214ENST00000496043 PARP3Q9Y6F1 533 aa17.04■□□□□ 0.32
PTPRF-214ENST00000496043 SCN11AQ9UI33 1791 aa17.03■□□□□ 0.32
PTPRF-214ENST00000496043 TGFB2P61812 414 aa17.03■□□□□ 0.32
PTPRF-214ENST00000496043 ZPR1O75312 459 aa17.02■□□□□ 0.32
PTPRF-214ENST00000496043 SRP68Q9UHB9 627 aaKnown RBP17.02■□□□□ 0.32
PTPRF-214ENST00000496043 STARD3NLO95772 234 aa17.01■□□□□ 0.31
PTPRF-214ENST00000496043 TEX13AQ9BXU3 409 aaPredicted RBP17.01■□□□□ 0.31
PTPRF-214ENST00000496043 USP42Q9H9J4 1324 aaKnown RBP17■□□□□ 0.31
PTPRF-214ENST00000496043 FKBP8Q14318 412 aa17■□□□□ 0.31
PTPRF-214ENST00000496043 ZNF790Q6PG37 636 aa17■□□□□ 0.31
PTPRF-214ENST00000496043 RTF1Q92541 710 aaKnown RBP17■□□□□ 0.31
PTPRF-214ENST00000496043 MRC1P22897 1456 aa16.99■□□□□ 0.31
PTPRF-214ENST00000496043 CHD4Q14839 1912 aa16.99■□□□□ 0.31
PTPRF-214ENST00000496043 MYH14Q7Z406 1995 aaKnown RBP16.98■□□□□ 0.31
PTPRF-214ENST00000496043 SOS1Q07889 1333 aaPredicted RBP16.98■□□□□ 0.31
PTPRF-214ENST00000496043 A0A0G2JLW4 131 aa16.98■□□□□ 0.31
PTPRF-214ENST00000496043 BTBD11A6QL63 1104 aa16.98■□□□□ 0.31
PTPRF-214ENST00000496043 CANXP27824 592 aaKnown RBP16.98■□□□□ 0.31
PTPRF-214ENST00000496043 USPL1Q5W0Q7 1092 aa16.98■□□□□ 0.31
PTPRF-214ENST00000496043 ZNF496Q96IT1 587 aaPredicted RBP16.98■□□□□ 0.31
PTPRF-214ENST00000496043 WWC3Q9ULE0 1092 aa16.98■□□□□ 0.31
PTPRF-214ENST00000496043 COL5A3P25940 1745 aaPredicted RBP16.98■□□□□ 0.31
PTPRF-214ENST00000496043 HTATSF1O43719 755 aaKnown RBP16.97■□□□□ 0.31
PTPRF-214ENST00000496043 NEFMP07197 916 aa16.97■□□□□ 0.31
PTPRF-214ENST00000496043 TM4SF1P30408 202 aa16.97■□□□□ 0.31
PTPRF-214ENST00000496043 FMNL2Q96PY5 1086 aa16.97■□□□□ 0.31
PTPRF-214ENST00000496043 NARFQ9UHQ1 456 aa16.97■□□□□ 0.31
PTPRF-214ENST00000496043 ZBTB1Q9Y2K1 713 aa16.97■□□□□ 0.31
PTPRF-214ENST00000496043 A0A087WZG4 1122 aa16.96■□□□□ 0.31
PTPRF-214ENST00000496043 CEMIPQ8WUJ3 1361 aa16.96■□□□□ 0.31
PTPRF-214ENST00000496043 ADAMTS7Q9UKP4 1686 aa16.95■□□□□ 0.3
PTPRF-214ENST00000496043 HEG1Q9ULI3 1381 aa16.95■□□□□ 0.3
PTPRF-214ENST00000496043 DPEP1P16444 411 aa16.95■□□□□ 0.3
PTPRF-214ENST00000496043 KCPQ6ZWJ8 1503 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms