RNA–Protein interactions for RNA: ENST00000494333.1

RIF1-211, Transcript of replication timing regulatory factor 1, humanhuman

TSL 3

Gene RIF1, Length 743 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-211ENST00000494333 C19orf44Q9H6X5 657 aa11.96□□□□□ -0.49
RIF1-211ENST00000494333 SALL2Q9Y467 1007 aaPredicted RBP11.96□□□□□ -0.49
RIF1-211ENST00000494333 NWD1Q149M9 1564 aa11.96□□□□□ -0.5
RIF1-211ENST00000494333 TRPM2O94759 1503 aa11.96□□□□□ -0.5
RIF1-211ENST00000494333 RPGRIP1LQ68CZ1 1315 aa11.95□□□□□ -0.5
RIF1-211ENST00000494333 C6orf229H3BNL8 230 aa11.95□□□□□ -0.5
RIF1-211ENST00000494333 TLL1O43897 1013 aa11.95□□□□□ -0.5
RIF1-211ENST00000494333 PRPF38BQ5VTL8 546 aaKnown RBP11.95□□□□□ -0.5
RIF1-211ENST00000494333 CLTCL1P53675 1640 aa11.95□□□□□ -0.5
RIF1-211ENST00000494333 PTPRUQ92729 1446 aa11.94□□□□□ -0.5
RIF1-211ENST00000494333 SETD5Q9C0A6 1442 aa11.94□□□□□ -0.5
RIF1-211ENST00000494333 NCOA3Q9Y6Q9 1424 aa11.94□□□□□ -0.5
RIF1-211ENST00000494333 METP08581 1390 aa11.94□□□□□ -0.5
RIF1-211ENST00000494333 ACIN1Q9UKV3 1341 aaKnown RBP11.94□□□□□ -0.5
RIF1-211ENST00000494333 FMNL1O95466 1100 aaPredicted RBP11.94□□□□□ -0.5
RIF1-211ENST00000494333 ATF3P18847 181 aa11.94□□□□□ -0.5
RIF1-211ENST00000494333 HRCP23327 699 aa11.94□□□□□ -0.5
RIF1-211ENST00000494333 KCNC4Q03721 635 aa11.94□□□□□ -0.5
RIF1-211ENST00000494333 MTMR2Q13614 643 aa11.94□□□□□ -0.5
RIF1-211ENST00000494333 RGL3Q3MIN7 710 aa11.94□□□□□ -0.5
RIF1-211ENST00000494333 ZBTB3Q9H5J0 574 aa11.94□□□□□ -0.5
RIF1-211ENST00000494333 XIRP1Q702N8 1843 aaKnown RBP11.94□□□□□ -0.5
RIF1-211ENST00000494333 CHD2O14647 1828 aaKnown RBP11.93□□□□□ -0.5
RIF1-211ENST00000494333 DIP2AQ14689 1571 aa11.92□□□□□ -0.5
RIF1-211ENST00000494333 NUTM2BA6NNL0 878 aaPredicted RBP11.92□□□□□ -0.5
RIF1-211ENST00000494333 NUTM2EB1AL46 878 aaPredicted RBP11.92□□□□□ -0.5
RIF1-211ENST00000494333 NUTM2AQ8IVF1 878 aaPredicted RBP11.92□□□□□ -0.5
RIF1-211ENST00000494333 NKX2-3Q8TAU0 364 aa11.92□□□□□ -0.5
RIF1-211ENST00000494333 SPSB2Q99619 263 aa11.92□□□□□ -0.5
RIF1-211ENST00000494333 CCDC144AA2RUR9 1427 aa11.92□□□□□ -0.5
RIF1-211ENST00000494333 NEXMIFQ5QGS0 1516 aa11.91□□□□□ -0.5
RIF1-211ENST00000494333 ADH1BP00325 375 aa11.91□□□□□ -0.5
RIF1-211ENST00000494333 RTL5Q5HYW3 569 aaPredicted RBP11.91□□□□□ -0.5
RIF1-211ENST00000494333 SETBP1Q9Y6X0 1596 aa11.91□□□□□ -0.5
RIF1-211ENST00000494333 SPDYE5A6NIY4 337 aa11.9□□□□□ -0.5
RIF1-211ENST00000494333 PPP2R2DQ66LE6 453 aa11.9□□□□□ -0.5
RIF1-211ENST00000494333 USB1Q9BQ65 265 aaKnown RBP11.9□□□□□ -0.5
RIF1-211ENST00000494333 RAB3GAP2Q9H2M9 1393 aa11.9□□□□□ -0.5
RIF1-211ENST00000494333 RETREG3Q86VR2 466 aa11.89□□□□□ -0.51
RIF1-211ENST00000494333 FAM160A2Q8N612 972 aaPredicted RBP11.89□□□□□ -0.51
RIF1-211ENST00000494333 ADGRF5Q8IZF2 1346 aa11.88□□□□□ -0.51
RIF1-211ENST00000494333 SOCS7O14512 581 aa11.88□□□□□ -0.51
RIF1-211ENST00000494333 NRXN3Q9Y4C0 1643 aa11.88□□□□□ -0.51
RIF1-211ENST00000494333 KIF1BO60333 1816 aa11.88□□□□□ -0.51
RIF1-211ENST00000494333 CFAP99D6REC4 459 aa11.87□□□□□ -0.51
RIF1-211ENST00000494333 PRR7Q8TB68 274 aa11.87□□□□□ -0.51
RIF1-211ENST00000494333 MED1Q15648 1581 aaPredicted RBP11.87□□□□□ -0.51
RIF1-211ENST00000494333 RFC5P40937 340 aa11.86□□□□□ -0.51
RIF1-211ENST00000494333 MSS51Q4VC12 460 aa11.86□□□□□ -0.51
RIF1-211ENST00000494333 BRINP3Q76B58 766 aa11.86□□□□□ -0.51
RIF1-211ENST00000494333 PLA2G2EQ9NZK7 142 aa11.86□□□□□ -0.51
RIF1-211ENST00000494333 ROBO1Q9Y6N7 1651 aa11.86□□□□□ -0.51
RIF1-211ENST00000494333 SPATA31E1Q6ZUB1 1445 aa11.86□□□□□ -0.51
RIF1-211ENST00000494333 ANKRD30BQ9BXX2 1392 aa11.85□□□□□ -0.51
RIF1-211ENST00000494333 ROBO2Q9HCK4 1378 aa11.84□□□□□ -0.51
RIF1-211ENST00000494333 IFFO2Q5TF58 517 aa11.84□□□□□ -0.51
RIF1-211ENST00000494333 SLC6A16Q9GZN6 736 aa11.84□□□□□ -0.51
RIF1-211ENST00000494333 PRDM9Q9NQV7 894 aa11.84□□□□□ -0.51
RIF1-211ENST00000494333 STK26Q9P289 416 aa11.84□□□□□ -0.51
RIF1-211ENST00000494333 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.83□□□□□ -0.52
RIF1-211ENST00000494333 TMEM132EQ6IEE7 984 aa11.83□□□□□ -0.52
RIF1-211ENST00000494333 DCCP43146 1447 aa11.83□□□□□ -0.52
RIF1-211ENST00000494333 XRN1Q8IZH2 1706 aaKnown RBP11.83□□□□□ -0.52
RIF1-211ENST00000494333 JCADQ9P266 1359 aa11.82□□□□□ -0.52
RIF1-211ENST00000494333 S1PR4O95977 384 aa11.82□□□□□ -0.52
RIF1-211ENST00000494333 RGS17Q9UGC6 210 aaPredicted RBP11.82□□□□□ -0.52
RIF1-211ENST00000494333 ADGRL3Q9HAR2 1447 aa11.82□□□□□ -0.52
RIF1-211ENST00000494333 MST1RQ04912 1400 aa11.81□□□□□ -0.52
RIF1-211ENST00000494333 TSC1Q92574 1164 aa11.81□□□□□ -0.52
RIF1-211ENST00000494333 PTCH1Q13635 1447 aa11.8□□□□□ -0.52
RIF1-211ENST00000494333 JUNDP17535 347 aa11.8□□□□□ -0.52
RIF1-211ENST00000494333 CFAP70Q5T0N1 1121 aa11.8□□□□□ -0.52
RIF1-211ENST00000494333 DESI1Q6ICB0 168 aa11.8□□□□□ -0.52
RIF1-211ENST00000494333 WAPLQ7Z5K2 1190 aa11.8□□□□□ -0.52
RIF1-211ENST00000494333 DDX17Q92841 729 aaKnown RBP11.8□□□□□ -0.52
RIF1-211ENST00000494333 C14orf93Q9H972 538 aaKnown RBP11.8□□□□□ -0.52
RIF1-211ENST00000494333 AP1G2O75843 785 aa11.79□□□□□ -0.52
RIF1-211ENST00000494333 DXOO77932 396 aaKnown RBP11.79□□□□□ -0.52
RIF1-211ENST00000494333 MMP16P51512 607 aa11.79□□□□□ -0.52
RIF1-211ENST00000494333 TMEM259Q4ZIN3 620 aa11.79□□□□□ -0.52
RIF1-211ENST00000494333 ORAI2Q96SN7 254 aa11.79□□□□□ -0.52
RIF1-211ENST00000494333 PPLO60437 1756 aa11.79□□□□□ -0.52
RIF1-211ENST00000494333 PHLPP1O60346 1717 aa11.78□□□□□ -0.52
RIF1-211ENST00000494333 CTDSPL2Q05D32 466 aa11.78□□□□□ -0.52
RIF1-211ENST00000494333 HELBQ8NG08 1087 aaPredicted RBP11.78□□□□□ -0.52
RIF1-211ENST00000494333 DCAF11Q8TEB1 546 aa11.78□□□□□ -0.52
RIF1-211ENST00000494333 LRRC59Q96AG4 307 aaKnown RBP11.78□□□□□ -0.52
RIF1-211ENST00000494333 SPATA31A6Q5VVP1 1343 aa11.78□□□□□ -0.52
RIF1-211ENST00000494333 LRPPRCP42704 1394 aaKnown RBP11.78□□□□□ -0.52
RIF1-211ENST00000494333 ABCC11Q96J66 1382 aa11.78□□□□□ -0.52
RIF1-211ENST00000494333 PIK3C2GO75747 1445 aa11.77□□□□□ -0.52
RIF1-211ENST00000494333 MEX3CQ5U5Q3 659 aaKnown RBP11.77□□□□□ -0.53
RIF1-211ENST00000494333 PPP1R18Q6NYC8 613 aa11.77□□□□□ -0.53
RIF1-211ENST00000494333 POTEAQ6S8J7 498 aa11.77□□□□□ -0.53
RIF1-211ENST00000494333 PRAG1Q86YV5 1406 aa11.77□□□□□ -0.53
RIF1-211ENST00000494333 C1orf167Q5SNV9 1468 aa11.76□□□□□ -0.53
RIF1-211ENST00000494333 ESCO1Q5FWF5 840 aa11.76□□□□□ -0.53
RIF1-211ENST00000494333 DHX57Q6P158 1386 aaKnown RBP11.76□□□□□ -0.53
RIF1-211ENST00000494333 ASXL1Q8IXJ9 1541 aa11.76□□□□□ -0.53
RIF1-211ENST00000494333 COL16A1Q07092 1604 aaPredicted RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms