RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 SAP130Q9H0E3 1048 aa7.09□□□□□ -1.27
VPS13A-212ENST00000493341 MRS2Q9HD23 443 aa7.09□□□□□ -1.27
VPS13A-212ENST00000493341 CDV3Q9UKY7 258 aaKnown RBP7.09□□□□□ -1.27
VPS13A-212ENST00000493341 ATAD2Q6PL18 1390 aa7.09□□□□□ -1.27
VPS13A-212ENST00000493341 TREHO43280 583 aa7.08□□□□□ -1.28
VPS13A-212ENST00000493341 NPR3P17342 541 aa7.08□□□□□ -1.28
VPS13A-212ENST00000493341 HS3ST6Q96QI5 342 aa7.08□□□□□ -1.28
VPS13A-212ENST00000493341 LDHBP07195 334 aaKnown RBP7.08□□□□□ -1.28
VPS13A-212ENST00000493341 TSPAN10Q9H1Z9 355 aaPredicted RBP7.08□□□□□ -1.28
VPS13A-212ENST00000493341 SERTAD1Q9UHV2 236 aa7.08□□□□□ -1.28
VPS13A-212ENST00000493341 FCF1Q9Y324 198 aaKnown RBP7.08□□□□□ -1.28
VPS13A-212ENST00000493341 PLCB3Q01970 1234 aa7.07□□□□□ -1.28
VPS13A-212ENST00000493341 C16orf46Q6P387 395 aa7.07□□□□□ -1.28
VPS13A-212ENST00000493341 C1QTNF2Q9BXJ5 285 aa7.07□□□□□ -1.28
VPS13A-212ENST00000493341 CCDC87Q9NVE4 849 aa7.07□□□□□ -1.28
VPS13A-212ENST00000493341 PARP2Q9UGN5 583 aa7.07□□□□□ -1.28
VPS13A-212ENST00000493341 ERVH48-1M5A8F1 160 aa7.06□□□□□ -1.28
VPS13A-212ENST00000493341 BACH1O14867 736 aa7.06□□□□□ -1.28
VPS13A-212ENST00000493341 GDF10P55107 478 aa7.06□□□□□ -1.28
VPS13A-212ENST00000493341 SH3BP2P78314 561 aa7.06□□□□□ -1.28
VPS13A-212ENST00000493341 MTRQ99707 1265 aa7.06□□□□□ -1.28
VPS13A-212ENST00000493341 POTEB3A0JP26 581 aa7.06□□□□□ -1.28
VPS13A-212ENST00000493341 EIF1AXP47813 144 aaKnown RBP7.06□□□□□ -1.28
VPS13A-212ENST00000493341 FMR1Q06787 632 aaKnown RBP eCLIP7.06□□□□□ -1.28
VPS13A-212ENST00000493341 EHHADHQ08426 723 aa7.06□□□□□ -1.28
VPS13A-212ENST00000493341 POTEBQ6S5H4 581 aa7.06□□□□□ -1.28
VPS13A-212ENST00000493341 TRMT44Q8IYL2 757 aaKnown RBP7.06□□□□□ -1.28
VPS13A-212ENST00000493341 DUSP9Q99956 384 aaKnown RBP7.06□□□□□ -1.28
VPS13A-212ENST00000493341 PRKD2Q9BZL6 878 aa7.06□□□□□ -1.28
VPS13A-212ENST00000493341 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.06□□□□□ -1.282e-8■■■■■ 167.7
VPS13A-212ENST00000493341 SCNN1DP51172 638 aa7.05□□□□□ -1.28
VPS13A-212ENST00000493341 VASH1Q7L8A9 365 aaPredicted RBP7.05□□□□□ -1.28
VPS13A-212ENST00000493341 NT5DC4Q86YG4 428 aa7.05□□□□□ -1.28
VPS13A-212ENST00000493341 PIK3R5Q8WYR1 880 aa7.05□□□□□ -1.28
VPS13A-212ENST00000493341 RNF19AQ9NV58 838 aa7.05□□□□□ -1.28
VPS13A-212ENST00000493341 SORBS3O60504 671 aa7.05□□□□□ -1.28
VPS13A-212ENST00000493341 INTS6LQ5JSJ4 861 aaKnown RBP7.05□□□□□ -1.28
VPS13A-212ENST00000493341 TBCELQ5QJ74 424 aa7.05□□□□□ -1.28
VPS13A-212ENST00000493341 LDLRAD1Q5T700 205 aa7.05□□□□□ -1.28
VPS13A-212ENST00000493341 ZNF516Q92618 1163 aa7.05□□□□□ -1.28
VPS13A-212ENST00000493341 CITED4Q96RK1 184 aa7.05□□□□□ -1.28
VPS13A-212ENST00000493341 A0A1W2PRU2 124 aa7.04□□□□□ -1.28
VPS13A-212ENST00000493341 PPP1R12BO60237 982 aaPredicted RBP7.04□□□□□ -1.28
VPS13A-212ENST00000493341 PRPF40AO75400 957 aaKnown RBP7.04□□□□□ -1.28
VPS13A-212ENST00000493341 CC2D2BQ6DHV5 1058 aa7.04□□□□□ -1.28
VPS13A-212ENST00000493341 CDAN1Q8IWY9 1227 aa7.04□□□□□ -1.28
VPS13A-212ENST00000493341 DMRTB1Q96MA1 342 aa7.04□□□□□ -1.28
VPS13A-212ENST00000493341 STIM2Q9P246 746 aa7.04□□□□□ -1.28
VPS13A-212ENST00000493341 WWC3Q9ULE0 1092 aa7.04□□□□□ -1.28
VPS13A-212ENST00000493341 FZD6O60353 706 aa7.03□□□□□ -1.28
VPS13A-212ENST00000493341 S1PR4O95977 384 aa7.03□□□□□ -1.28
VPS13A-212ENST00000493341 INHAP05111 366 aa7.03□□□□□ -1.28
VPS13A-212ENST00000493341 ERVK-9P63128 1117 aa7.03□□□□□ -1.28
VPS13A-212ENST00000493341 FGD1P98174 961 aa7.03□□□□□ -1.28
VPS13A-212ENST00000493341 DSC3Q14574 896 aa7.03□□□□□ -1.28
VPS13A-212ENST00000493341 ALKBH2Q6NS38 261 aa7.03□□□□□ -1.28
VPS13A-212ENST00000493341 SPATA32Q96LK8 384 aa7.03□□□□□ -1.28
VPS13A-212ENST00000493341 VTI1BQ9UEU0 232 aa7.03□□□□□ -1.28
VPS13A-212ENST00000493341 PPM1GO15355 546 aaPredicted RBP7.03□□□□□ -1.28
VPS13A-212ENST00000493341 PSMD2Q13200 908 aa7.03□□□□□ -1.28
VPS13A-212ENST00000493341 ARID5BQ14865 1188 aa7.03□□□□□ -1.28
VPS13A-212ENST00000493341 COX20Q5RI15 118 aa7.03□□□□□ -1.28
VPS13A-212ENST00000493341 TANGO6Q9C0B7 1094 aa7.03□□□□□ -1.28
VPS13A-212ENST00000493341 OSBPL3Q9H4L5 887 aa7.03□□□□□ -1.28
VPS13A-212ENST00000493341 CYLDQ9NQC7 956 aa7.03□□□□□ -1.28
VPS13A-212ENST00000493341 EPHA4P54764 986 aa7.02□□□□□ -1.29
VPS13A-212ENST00000493341 ATP2B2Q01814 1243 aa7.02□□□□□ -1.29
VPS13A-212ENST00000493341 RAD51AP2Q09MP3 1159 aa7.02□□□□□ -1.29
VPS13A-212ENST00000493341 PDE3BQ13370 1112 aa7.02□□□□□ -1.29
VPS13A-212ENST00000493341 THSD4Q6ZMP0 1018 aa7.02□□□□□ -1.29
VPS13A-212ENST00000493341 GPR182O15218 404 aa7.01□□□□□ -1.29
VPS13A-212ENST00000493341 CANXP27824 592 aaKnown RBP7.01□□□□□ -1.29
VPS13A-212ENST00000493341 ITGAEP38570 1179 aa7.01□□□□□ -1.29
VPS13A-212ENST00000493341 TMC4Q7Z404 712 aa7.01□□□□□ -1.29
VPS13A-212ENST00000493341 ATCAYQ86WG3 371 aa7.01□□□□□ -1.29
VPS13A-212ENST00000493341 SETDB2Q96T68 719 aa7.01□□□□□ -1.29
VPS13A-212ENST00000493341 ETNK1Q9HBU6 452 aa7.01□□□□□ -1.29
VPS13A-212ENST00000493341 TMPRSS4Q9NRS4 437 aa7.01□□□□□ -1.29
VPS13A-212ENST00000493341 WASLO00401 505 aaPredicted RBP7.01□□□□□ -1.29
VPS13A-212ENST00000493341 ZBTB24O43167 697 aaPredicted RBP7.01□□□□□ -1.29
VPS13A-212ENST00000493341 DAB2P98082 770 aa7.01□□□□□ -1.29
VPS13A-212ENST00000493341 METTL16Q86W50 562 aaKnown RBP7.01□□□□□ -1.29
VPS13A-212ENST00000493341 RNF34Q969K3 372 aa7.01□□□□□ -1.29
VPS13A-212ENST00000493341 C2orf49Q9BVC5 232 aaPredicted RBP7.01□□□□□ -1.29
VPS13A-212ENST00000493341 FANCCQ00597 558 aa7□□□□□ -1.29
VPS13A-212ENST00000493341 SLC9A9Q8IVB4 645 aa7□□□□□ -1.29
VPS13A-212ENST00000493341 NKX2-3Q8TAU0 364 aa7□□□□□ -1.29
VPS13A-212ENST00000493341 NIF3L1Q9GZT8 377 aa7□□□□□ -1.29
VPS13A-212ENST00000493341 TNFRSF10BO14763 440 aa7□□□□□ -1.29
VPS13A-212ENST00000493341 ZBTB39O15060 712 aa7□□□□□ -1.29
VPS13A-212ENST00000493341 IGHA2P01877 340 aa7□□□□□ -1.29
VPS13A-212ENST00000493341 TJAP1Q5JTD0 557 aa7□□□□□ -1.29
VPS13A-212ENST00000493341 NYAP1Q6ZVC0 841 aa7□□□□□ -1.29
VPS13A-212ENST00000493341 KCTD12Q96CX2 325 aaKnown RBP7□□□□□ -1.29
VPS13A-212ENST00000493341 DNAJC2Q99543 621 aaKnown RBP7□□□□□ -1.29
VPS13A-212ENST00000493341 CCSER2Q9H7U1 834 aa7□□□□□ -1.29
VPS13A-212ENST00000493341 IL21Q9HBE4 155 aa7□□□□□ -1.29
VPS13A-212ENST00000493341 CAPN10Q9HC96 672 aa7□□□□□ -1.29
VPS13A-212ENST00000493341 SCHIP1Q9P0W5 487 aaPredicted RBP7□□□□□ -1.29
VPS13A-212ENST00000493341 LRFN2Q9ULH4 789 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms