RNA–Protein interactions for RNA: ENST00000493075.1

LRTM1-202, Transcript of leucine rich repeats and transmembrane domains 1, humanhuman

TSL 1 (best) BASIC

Gene LRTM1, Length 1,318 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRTM1-202ENST00000493075 LINC00116Q8NCU8 138 aa15.51■□□□□ 0.07
LRTM1-202ENST00000493075 KDM6AO15550 1401 aaPredicted RBP15.51■□□□□ 0.07
LRTM1-202ENST00000493075 HMOX1P09601 288 aa15.5■□□□□ 0.07
LRTM1-202ENST00000493075 NFATC2IPQ8NCF5 419 aa15.5■□□□□ 0.07
LRTM1-202ENST00000493075 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.49■□□□□ 0.07
LRTM1-202ENST00000493075 RC3H1Q5TC82 1133 aaKnown RBP15.49■□□□□ 0.07
LRTM1-202ENST00000493075 SLC4A9Q96Q91 983 aa15.49■□□□□ 0.07
LRTM1-202ENST00000493075 RBM42Q9BTD8 480 aaKnown RBP15.48■□□□□ 0.07
LRTM1-202ENST00000493075 ITGB4P16144 1822 aa15.48■□□□□ 0.07
LRTM1-202ENST00000493075 MTHFSDQ2M296 383 aaKnown RBP15.47■□□□□ 0.07
LRTM1-202ENST00000493075 AMIGO3Q86WK7 504 aa15.47■□□□□ 0.07
LRTM1-202ENST00000493075 GNPATO15228 680 aa15.46■□□□□ 0.07
LRTM1-202ENST00000493075 RNMTO43148 476 aaKnown RBP15.46■□□□□ 0.07
LRTM1-202ENST00000493075 YY1P25490 414 aa15.46■□□□□ 0.07
LRTM1-202ENST00000493075 CNGB1Q14028 1251 aaPredicted RBP15.46■□□□□ 0.07
LRTM1-202ENST00000493075 CFAP53Q96M91 514 aa15.46■□□□□ 0.07
LRTM1-202ENST00000493075 SLC52A2Q9HAB3 445 aa15.46■□□□□ 0.07
LRTM1-202ENST00000493075 LGR6Q9HBX8 967 aa15.46■□□□□ 0.07
LRTM1-202ENST00000493075 C5P01031 1676 aa15.46■□□□□ 0.07
LRTM1-202ENST00000493075 C4BP0C0L5 1744 aa15.46■□□□□ 0.06
LRTM1-202ENST00000493075 COL24A1Q17RW2 1714 aa15.46■□□□□ 0.06
LRTM1-202ENST00000493075 U2SURPO15042 1029 aaKnown RBP15.45■□□□□ 0.06
LRTM1-202ENST00000493075 PHF14O94880 888 aa15.45■□□□□ 0.06
LRTM1-202ENST00000493075 MSL1Q68DK7 614 aa15.45■□□□□ 0.06
LRTM1-202ENST00000493075 RTCBQ9Y3I0 505 aaKnown RBP15.45■□□□□ 0.06
LRTM1-202ENST00000493075 COL3A1P02461 1466 aaPredicted RBP15.45■□□□□ 0.06
LRTM1-202ENST00000493075 CNTNAP4Q9C0A0 1308 aa15.44■□□□□ 0.06
LRTM1-202ENST00000493075 TRAPPC3LQ5T215 181 aa15.44■□□□□ 0.06
LRTM1-202ENST00000493075 NUDCQ9Y266 331 aa15.44■□□□□ 0.06
LRTM1-202ENST00000493075 CD2APQ9Y5K6 639 aa15.44■□□□□ 0.06
LRTM1-202ENST00000493075 PTCD1O75127 700 aaKnown RBP15.43■□□□□ 0.06
LRTM1-202ENST00000493075 RPS6KA4O75676 772 aa15.43■□□□□ 0.06
LRTM1-202ENST00000493075 PPP2R1AP30153 589 aa15.43■□□□□ 0.06
LRTM1-202ENST00000493075 SMIM5Q71RC9 77 aa15.43■□□□□ 0.06
LRTM1-202ENST00000493075 KLHL34Q8N239 644 aa15.43■□□□□ 0.06
LRTM1-202ENST00000493075 GAS2L2Q8NHY3 880 aa15.43■□□□□ 0.06
LRTM1-202ENST00000493075 TAF1LQ8IZX4 1826 aa15.42■□□□□ 0.06
LRTM1-202ENST00000493075 TUBGCP6Q96RT7 1819 aa15.42■□□□□ 0.06
LRTM1-202ENST00000493075 GPR162Q16538 588 aa15.42■□□□□ 0.06
LRTM1-202ENST00000493075 NLGN1Q8N2Q7 840 aa15.42■□□□□ 0.06
LRTM1-202ENST00000493075 NLGN2Q8NFZ4 835 aa15.42■□□□□ 0.06
LRTM1-202ENST00000493075 GNAT3A8MTJ3 354 aa15.41■□□□□ 0.06
LRTM1-202ENST00000493075 ARHGEF1Q92888 912 aaKnown RBP15.41■□□□□ 0.06
LRTM1-202ENST00000493075 ZNF831Q5JPB2 1677 aa15.4■□□□□ 0.06
LRTM1-202ENST00000493075 CRKLP46109 303 aaKnown RBP15.4■□□□□ 0.06
LRTM1-202ENST00000493075 RSPH6AQ9H0K4 717 aa15.4■□□□□ 0.06
LRTM1-202ENST00000493075 FCHSD2O94868 740 aa15.39■□□□□ 0.05
LRTM1-202ENST00000493075 RFC4P35249 363 aa15.39■□□□□ 0.05
LRTM1-202ENST00000493075 VSIG10Q8N0Z9 540 aa15.39■□□□□ 0.05
LRTM1-202ENST00000493075 IL17REQ8NFR9 667 aa15.39■□□□□ 0.05
LRTM1-202ENST00000493075 MRC1P22897 1456 aa15.38■□□□□ 0.05
LRTM1-202ENST00000493075 GRIN3BO60391 1043 aa15.38■□□□□ 0.05
LRTM1-202ENST00000493075 PRKAR2BP31323 418 aa15.38■□□□□ 0.05
LRTM1-202ENST00000493075 MAPK8IP2Q13387 824 aaPredicted RBP15.38■□□□□ 0.05
LRTM1-202ENST00000493075 SLC39A6Q13433 755 aa15.38■□□□□ 0.05
LRTM1-202ENST00000493075 INTS5Q6P9B9 1019 aaKnown RBP15.38■□□□□ 0.05
LRTM1-202ENST00000493075 PHACTR3Q96KR7 559 aa15.38■□□□□ 0.05
LRTM1-202ENST00000493075 U2AF1L5P0DN76 240 aaPredicted RBP15.37■□□□□ 0.05
LRTM1-202ENST00000493075 U2AF1Q01081 240 aaKnown RBP eCLIP15.37■□□□□ 0.05
LRTM1-202ENST00000493075 DNAJC10Q8IXB1 793 aa15.37■□□□□ 0.05
LRTM1-202ENST00000493075 UBR3Q6ZT12 1888 aa15.36■□□□□ 0.05
LRTM1-202ENST00000493075 MMP10P09238 476 aa15.36■□□□□ 0.05
LRTM1-202ENST00000493075 CYP19A1P11511 503 aaPredicted RBP15.36■□□□□ 0.05
LRTM1-202ENST00000493075 GYS1P13807 737 aa15.36■□□□□ 0.05
LRTM1-202ENST00000493075 TEFQ10587 303 aa15.36■□□□□ 0.05
LRTM1-202ENST00000493075 PELP1Q8IZL8 1130 aaKnown RBP15.35■□□□□ 0.05
LRTM1-202ENST00000493075 TTC5Q8N0Z6 440 aa15.35■□□□□ 0.05
LRTM1-202ENST00000493075 CCDC87Q9NVE4 849 aa15.35■□□□□ 0.05
LRTM1-202ENST00000493075 ZNF790Q6PG37 636 aa15.34■□□□□ 0.05
LRTM1-202ENST00000493075 TEX13AQ9BXU3 409 aaPredicted RBP15.34■□□□□ 0.05
LRTM1-202ENST00000493075 CEMIPQ8WUJ3 1361 aa15.34■□□□□ 0.05
LRTM1-202ENST00000493075 ADAMTS7Q9UKP4 1686 aa15.34■□□□□ 0.05
LRTM1-202ENST00000493075 SCN11AQ9UI33 1791 aa15.34■□□□□ 0.05
LRTM1-202ENST00000493075 HTATSF1O43719 755 aaKnown RBP15.33■□□□□ 0.04
LRTM1-202ENST00000493075 YBX3P16989 372 aaKnown RBP eCLIP15.33■□□□□ 0.04
LRTM1-202ENST00000493075 USP42Q9H9J4 1324 aaKnown RBP15.32■□□□□ 0.04
LRTM1-202ENST00000493075 STARD3NLO95772 234 aa15.32■□□□□ 0.04
LRTM1-202ENST00000493075 TGFB2P61812 414 aa15.32■□□□□ 0.04
LRTM1-202ENST00000493075 PARP3Q9Y6F1 533 aa15.32■□□□□ 0.04
LRTM1-202ENST00000493075 SOS1Q07889 1333 aaPredicted RBP15.32■□□□□ 0.04
LRTM1-202ENST00000493075 CICQ96RK0 1608 aaPredicted RBP15.31■□□□□ 0.04
LRTM1-202ENST00000493075 KCPQ6ZWJ8 1503 aa15.31■□□□□ 0.04
LRTM1-202ENST00000493075 RALBP1Q15311 655 aa15.31■□□□□ 0.04
LRTM1-202ENST00000493075 RTF1Q92541 710 aaKnown RBP15.31■□□□□ 0.04
LRTM1-202ENST00000493075 ZNF496Q96IT1 587 aaPredicted RBP15.31■□□□□ 0.04
LRTM1-202ENST00000493075 COL5A3P25940 1745 aaPredicted RBP15.31■□□□□ 0.04
LRTM1-202ENST00000493075 ZPR1O75312 459 aa15.3■□□□□ 0.04
LRTM1-202ENST00000493075 ZNF784Q8NCA9 323 aaPredicted RBP15.3■□□□□ 0.04
LRTM1-202ENST00000493075 SRP68Q9UHB9 627 aaKnown RBP15.3■□□□□ 0.04
LRTM1-202ENST00000493075 BTBD11A6QL63 1104 aa15.29■□□□□ 0.04
LRTM1-202ENST00000493075 TM4SF1P30408 202 aa15.29■□□□□ 0.04
LRTM1-202ENST00000493075 FKBP8Q14318 412 aa15.29■□□□□ 0.04
LRTM1-202ENST00000493075 FMNL2Q96PY5 1086 aa15.29■□□□□ 0.04
LRTM1-202ENST00000493075 PNNQ9H307 717 aaKnown RBP15.29■□□□□ 0.04
LRTM1-202ENST00000493075 NARFQ9UHQ1 456 aa15.29■□□□□ 0.04
LRTM1-202ENST00000493075 ZBTB1Q9Y2K1 713 aa15.29■□□□□ 0.04
LRTM1-202ENST00000493075 UTRNP46939 3433 aa15.29■□□□□ 0.04
LRTM1-202ENST00000493075 HEG1Q9ULI3 1381 aa15.28■□□□□ 0.04
LRTM1-202ENST00000493075 NEFMP07197 916 aa15.28■□□□□ 0.04
LRTM1-202ENST00000493075 A0A087WZG4 1122 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms