RNA–Protein interactions for RNA: ENST00000492977.5

PTPN7-216, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 1 (best)

Gene PTPN7, Length 1,595 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-216ENST00000492977 CHMP4AQ9BY43 222 aa17.76■□□□□ 0.43
PTPN7-216ENST00000492977 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.76■□□□□ 0.43
PTPN7-216ENST00000492977 CACNA1FO60840 1977 aa17.76■□□□□ 0.43
PTPN7-216ENST00000492977 TEFQ10587 303 aa17.75■□□□□ 0.43
PTPN7-216ENST00000492977 STK31Q9BXU1 1019 aa17.75■□□□□ 0.43
PTPN7-216ENST00000492977 RGS12O14924 1447 aa17.75■□□□□ 0.43
PTPN7-216ENST00000492977 CSB-PGBD3P0DP91 1061 aa17.74■□□□□ 0.43
PTPN7-216ENST00000492977 TATP17735 454 aaPredicted RBP17.74■□□□□ 0.43
PTPN7-216ENST00000492977 RGS3P49796 1198 aa17.74■□□□□ 0.43
PTPN7-216ENST00000492977 CHRNA2Q15822 529 aa17.74■□□□□ 0.43
PTPN7-216ENST00000492977 NHSL1Q5SYE7 1610 aa17.74■□□□□ 0.43
PTPN7-216ENST00000492977 HOXB7P09629 217 aa17.74■□□□□ 0.43
PTPN7-216ENST00000492977 MYT1Q01538 1121 aa17.74■□□□□ 0.43
PTPN7-216ENST00000492977 MPRIPQ6WCQ1 1025 aa17.74■□□□□ 0.43
PTPN7-216ENST00000492977 KDM3BQ7LBC6 1761 aa17.73■□□□□ 0.43
PTPN7-216ENST00000492977 PDZRN3Q9UPQ7 1066 aa17.73■□□□□ 0.43
PTPN7-216ENST00000492977 SPG7Q9UQ90 795 aa17.73■□□□□ 0.43
PTPN7-216ENST00000492977 SMC5Q8IY18 1101 aa17.72■□□□□ 0.43
PTPN7-216ENST00000492977 VIRMAQ69YN4 1812 aaKnown RBP17.72■□□□□ 0.43
PTPN7-216ENST00000492977 ADAMTS7Q9UKP4 1686 aa17.72■□□□□ 0.43
PTPN7-216ENST00000492977 SPDYE4A6NLX3 237 aa17.71■□□□□ 0.43
PTPN7-216ENST00000492977 BTBD11A6QL63 1104 aa17.71■□□□□ 0.43
PTPN7-216ENST00000492977 EIF4A1P60842 406 aaKnown RBP17.71■□□□□ 0.43
PTPN7-216ENST00000492977 FAM161AQ3B820 660 aa17.71■□□□□ 0.43
PTPN7-216ENST00000492977 PRDM11Q9NQV5 511 aa17.71■□□□□ 0.43
PTPN7-216ENST00000492977 MKRN4PQ13434 485 aaPredicted RBP17.69■□□□□ 0.42
PTPN7-216ENST00000492977 G2E3Q7L622 706 aa17.69■□□□□ 0.42
PTPN7-216ENST00000492977 ABCA3Q99758 1704 aa17.68■□□□□ 0.42
PTPN7-216ENST00000492977 CCT4P50991 539 aaKnown RBP17.68■□□□□ 0.42
PTPN7-216ENST00000492977 HDGFL1Q5TGJ6 251 aa17.68■□□□□ 0.42
PTPN7-216ENST00000492977 MEGF6O75095 1541 aa17.68■□□□□ 0.42
PTPN7-216ENST00000492977 SIPA1L3O60292 1781 aaPredicted RBP17.68■□□□□ 0.42
PTPN7-216ENST00000492977 WDR17Q8IZU2 1322 aa17.68■□□□□ 0.42
PTPN7-216ENST00000492977 PHKG2P15735 406 aa17.67■□□□□ 0.42
PTPN7-216ENST00000492977 FLIIQ13045 1269 aa17.67■□□□□ 0.42
PTPN7-216ENST00000492977 IFNL2Q8IZJ0 200 aa17.67■□□□□ 0.42
PTPN7-216ENST00000492977 GCC1Q96CN9 775 aa17.67■□□□□ 0.42
PTPN7-216ENST00000492977 C8orf34Q49A92 452 aa17.66■□□□□ 0.42
PTPN7-216ENST00000492977 PKD1L3Q7Z443 1732 aa17.66■□□□□ 0.42
PTPN7-216ENST00000492977 ANP32AP39687 249 aaKnown RBP17.66■□□□□ 0.42
PTPN7-216ENST00000492977 SCN11AQ9UI33 1791 aa17.65■□□□□ 0.42
PTPN7-216ENST00000492977 COL5A2P05997 1499 aaPredicted RBP17.65■□□□□ 0.42
PTPN7-216ENST00000492977 HEG1Q9ULI3 1381 aa17.65■□□□□ 0.42
PTPN7-216ENST00000492977 KCNQ3O43525 872 aa17.65■□□□□ 0.42
PTPN7-216ENST00000492977 HSP90AB1P08238 724 aaKnown RBP17.65■□□□□ 0.42
PTPN7-216ENST00000492977 C1orf115Q9H7X2 142 aa17.65■□□□□ 0.42
PTPN7-216ENST00000492977 NUCB1Q02818 461 aa17.64■□□□□ 0.41
PTPN7-216ENST00000492977 FKBP5Q13451 457 aaPredicted RBP17.64■□□□□ 0.41
PTPN7-216ENST00000492977 NECTIN2Q92692 538 aa17.64■□□□□ 0.41
PTPN7-216ENST00000492977 DCAF5Q96JK2 942 aa17.64■□□□□ 0.41
PTPN7-216ENST00000492977 TOM1L2Q6ZVM7 507 aa17.63■□□□□ 0.41
PTPN7-216ENST00000492977 SIRT2Q8IXJ6 389 aa17.63■□□□□ 0.41
PTPN7-216ENST00000492977 RPAP2Q8IXW5 612 aaPredicted RBP17.63■□□□□ 0.41
PTPN7-216ENST00000492977 SLC52A2Q9HAB3 445 aa17.63■□□□□ 0.41
PTPN7-216ENST00000492977 FBXO3Q9UK99 471 aa17.63■□□□□ 0.41
PTPN7-216ENST00000492977 KDM6AO15550 1401 aaPredicted RBP17.63■□□□□ 0.41
PTPN7-216ENST00000492977 F6X3S4 739 aa17.62■□□□□ 0.41
PTPN7-216ENST00000492977 SLC4A10Q6U841 1118 aa17.62■□□□□ 0.41
PTPN7-216ENST00000492977 CARD10Q9BWT7 1032 aa17.62■□□□□ 0.41
PTPN7-216ENST00000492977 PXDNLA1KZ92 1463 aa17.62■□□□□ 0.41
PTPN7-216ENST00000492977 LTBP4Q8N2S1 1624 aa17.62■□□□□ 0.41
PTPN7-216ENST00000492977 GIGYF1O75420 1035 aaPredicted RBP17.62■□□□□ 0.41
PTPN7-216ENST00000492977 EIF2S2P20042 333 aaKnown RBP17.62■□□□□ 0.41
PTPN7-216ENST00000492977 ANKRD44Q8N8A2 993 aa17.62■□□□□ 0.41
PTPN7-216ENST00000492977 PARP4Q9UKK3 1724 aaKnown RBP17.62■□□□□ 0.41
PTPN7-216ENST00000492977 CYP27B1O15528 508 aa17.61■□□□□ 0.41
PTPN7-216ENST00000492977 AHDC1Q5TGY3 1603 aaPredicted RBP17.61■□□□□ 0.41
PTPN7-216ENST00000492977 ROBO1Q9Y6N7 1651 aa17.61■□□□□ 0.41
PTPN7-216ENST00000492977 EVA1CP58658 441 aa17.6■□□□□ 0.41
PTPN7-216ENST00000492977 CHD1LQ86WJ1 897 aa17.6■□□□□ 0.41
PTPN7-216ENST00000492977 MEIS3Q99687 375 aa17.6■□□□□ 0.41
PTPN7-216ENST00000492977 MRC1P22897 1456 aa17.6■□□□□ 0.41
PTPN7-216ENST00000492977 N4BP2Q86UW6 1770 aaPredicted RBP17.6■□□□□ 0.41
PTPN7-216ENST00000492977 ZNF790Q6PG37 636 aa17.59■□□□□ 0.41
PTPN7-216ENST00000492977 CHPF2Q9P2E5 772 aa17.59■□□□□ 0.41
PTPN7-216ENST00000492977 DBF4Q9UBU7 674 aaPredicted RBP17.59■□□□□ 0.41
PTPN7-216ENST00000492977 ATP10DQ9P241 1426 aa17.59■□□□□ 0.41
PTPN7-216ENST00000492977 GNAI3P08754 354 aa17.58■□□□□ 0.41
PTPN7-216ENST00000492977 CEP85Q6P2H3 762 aa17.58■□□□□ 0.41
PTPN7-216ENST00000492977 NFATC2IPQ8NCF5 419 aa17.58■□□□□ 0.41
PTPN7-216ENST00000492977 ZCRB1Q8TBF4 217 aaKnown RBP17.58■□□□□ 0.41
PTPN7-216ENST00000492977 DCTPP1Q9H773 170 aa17.58■□□□□ 0.41
PTPN7-216ENST00000492977 PHAXQ9H814 394 aaKnown RBP17.58■□□□□ 0.41
PTPN7-216ENST00000492977 IL2RBP14784 551 aa17.57■□□□□ 0.4
PTPN7-216ENST00000492977 IPO9Q96P70 1041 aaKnown RBP17.57■□□□□ 0.4
PTPN7-216ENST00000492977 PCDH11XQ9BZA7 1347 aa17.57■□□□□ 0.4
PTPN7-216ENST00000492977 PCDH11YQ9BZA8 1340 aa17.57■□□□□ 0.4
PTPN7-216ENST00000492977 ANKRD45Q5TZF3 282 aa17.57■□□□□ 0.4
PTPN7-216ENST00000492977 GNAI2P04899 355 aa17.56■□□□□ 0.4
PTPN7-216ENST00000492977 LARP1Q6PKG0 1096 aaKnown RBP17.56■□□□□ 0.4
PTPN7-216ENST00000492977 LNPKQ9C0E8 428 aa17.56■□□□□ 0.4
PTPN7-216ENST00000492977 STRN4Q9NRL3 753 aa17.56■□□□□ 0.4
PTPN7-216ENST00000492977 COL22A1Q8NFW1 1626 aaPredicted RBP17.56■□□□□ 0.4
PTPN7-216ENST00000492977 HMMRO75330 724 aa17.55■□□□□ 0.4
PTPN7-216ENST00000492977 NPM2Q86SE8 214 aaKnown RBP17.55■□□□□ 0.4
PTPN7-216ENST00000492977 HYPKQ9NX55 129 aa17.55■□□□□ 0.4
PTPN7-216ENST00000492977 CABP4P57796 275 aa17.54■□□□□ 0.4
PTPN7-216ENST00000492977 NKX1-1Q15270 411 aaPredicted RBP17.54■□□□□ 0.4
PTPN7-216ENST00000492977 SLC39A6Q13433 755 aa17.53■□□□□ 0.4
PTPN7-216ENST00000492977 DNAAF4Q8WXU2 420 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms