RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 BCL9O00512 1426 aa12.47□□□□□ -0.41
USP54-214ENST00000492357 KDM6AO15550 1401 aaPredicted RBP12.47□□□□□ -0.41
USP54-214ENST00000492357 MCM10Q7L590 875 aa12.47□□□□□ -0.41
USP54-214ENST00000492357 MBIPQ9NS73 344 aa12.47□□□□□ -0.41
USP54-214ENST00000492357 ONECUT3O60422 494 aaPredicted RBP12.46□□□□□ -0.41
USP54-214ENST00000492357 SLC52A2Q9HAB3 445 aa12.46□□□□□ -0.41
USP54-214ENST00000492357 CACNA1FO60840 1977 aa12.46□□□□□ -0.41
USP54-214ENST00000492357 AFF2P51816 1311 aa12.45□□□□□ -0.42
USP54-214ENST00000492357 NEFLP07196 543 aa12.45□□□□□ -0.42
USP54-214ENST00000492357 MS4A1P11836 297 aa12.45□□□□□ -0.42
USP54-214ENST00000492357 DCTN1Q14203 1278 aa12.45□□□□□ -0.42
USP54-214ENST00000492357 DDB1Q16531 1140 aa12.45□□□□□ -0.42
USP54-214ENST00000492357 ZNF772Q68DY9 489 aaPredicted RBP12.45□□□□□ -0.42
USP54-214ENST00000492357 TSPYL4Q9UJ04 414 aa12.45□□□□□ -0.42
USP54-214ENST00000492357 PAPPAQ13219 1627 aa12.44□□□□□ -0.42
USP54-214ENST00000492357 GLI3P10071 1580 aa12.44□□□□□ -0.42
USP54-214ENST00000492357 KIF16BQ96L93 1317 aa12.44□□□□□ -0.42
USP54-214ENST00000492357 EXOSC9Q06265 439 aaKnown RBP12.44□□□□□ -0.42
USP54-214ENST00000492357 MPRIPQ6WCQ1 1025 aa12.44□□□□□ -0.42
USP54-214ENST00000492357 GJD4Q96KN9 370 aaPredicted RBP12.44□□□□□ -0.42
USP54-214ENST00000492357 HEG1Q9ULI3 1381 aa12.43□□□□□ -0.42
USP54-214ENST00000492357 TSR2Q969E8 191 aaKnown RBP12.43□□□□□ -0.42
USP54-214ENST00000492357 THUMPD2Q9BTF0 503 aaKnown RBP12.43□□□□□ -0.42
USP54-214ENST00000492357 SENP3-EIF4A1A0A087X0R7 540 aa12.42□□□□□ -0.42
USP54-214ENST00000492357 BTBD11A6QL63 1104 aa12.42□□□□□ -0.42
USP54-214ENST00000492357 RARSP54136 660 aaKnown RBP12.42□□□□□ -0.42
USP54-214ENST00000492357 TWISTNBQ3B726 338 aaPredicted RBP12.42□□□□□ -0.42
USP54-214ENST00000492357 LGR6Q9HBX8 967 aa12.42□□□□□ -0.42
USP54-214ENST00000492357 USP35Q9P2H5 1018 aa12.42□□□□□ -0.42
USP54-214ENST00000492357 CCDC9Q9Y3X0 531 aaKnown RBP12.42□□□□□ -0.42
USP54-214ENST00000492357 UBR2Q8IWV8 1755 aa12.42□□□□□ -0.42
USP54-214ENST00000492357 CICQ96RK0 1608 aaPredicted RBP12.41□□□□□ -0.42
USP54-214ENST00000492357 VAMP4O75379 141 aa12.41□□□□□ -0.42
USP54-214ENST00000492357 RRP1P56182 461 aaKnown RBP12.41□□□□□ -0.42
USP54-214ENST00000492357 CABP4P57796 275 aa12.41□□□□□ -0.42
USP54-214ENST00000492357 AAMPQ13685 434 aa12.41□□□□□ -0.42
USP54-214ENST00000492357 ARHGAP45Q92619 1136 aa12.41□□□□□ -0.42
USP54-214ENST00000492357 TOGARAM1Q9Y4F4 1720 aa12.41□□□□□ -0.42
USP54-214ENST00000492357 LAS1LQ9Y4W2 734 aaKnown RBP12.41□□□□□ -0.42
USP54-214ENST00000492357 SUPT16HQ9Y5B9 1047 aaKnown RBP12.41□□□□□ -0.42
USP54-214ENST00000492357 IPO8O15397 1037 aaKnown RBP12.4□□□□□ -0.42
USP54-214ENST00000492357 EIF4A1P60842 406 aaKnown RBP12.4□□□□□ -0.42
USP54-214ENST00000492357 PDE3AQ14432 1141 aa12.4□□□□□ -0.42
USP54-214ENST00000492357 ZNF790Q6PG37 636 aa12.4□□□□□ -0.42
USP54-214ENST00000492357 ZNF831Q5JPB2 1677 aa12.4□□□□□ -0.42
USP54-214ENST00000492357 ITGB4P16144 1822 aa12.39□□□□□ -0.43
USP54-214ENST00000492357 HMGB2P26583 209 aaKnown RBP12.39□□□□□ -0.43
USP54-214ENST00000492357 TTC5Q8N0Z6 440 aa12.39□□□□□ -0.43
USP54-214ENST00000492357 DDX54Q8TDD1 881 aaKnown RBP12.39□□□□□ -0.43
USP54-214ENST00000492357 ERBB4Q15303 1308 aa12.38□□□□□ -0.43
USP54-214ENST00000492357 LAMB4A4D0S4 1761 aa12.38□□□□□ -0.43
USP54-214ENST00000492357 DOT1LQ8TEK3 1739 aa12.38□□□□□ -0.43
USP54-214ENST00000492357 RBM6P78332 1123 aaKnown RBP12.38□□□□□ -0.43
USP54-214ENST00000492357 CCDC30Q5VVM6 783 aa12.38□□□□□ -0.43
USP54-214ENST00000492357 VSIG10Q8N0Z9 540 aa12.38□□□□□ -0.43
USP54-214ENST00000492357 NFATC2IPQ8NCF5 419 aa12.38□□□□□ -0.43
USP54-214ENST00000492357 TMOD3Q9NYL9 352 aa12.38□□□□□ -0.43
USP54-214ENST00000492357 FAM98CQ17RN3 349 aaKnown RBP12.37□□□□□ -0.43
USP54-214ENST00000492357 C8orf58Q8NAV2 365 aa12.37□□□□□ -0.43
USP54-214ENST00000492357 FMNL2Q96PY5 1086 aa12.37□□□□□ -0.43
USP54-214ENST00000492357 TEX13AQ9BXU3 409 aaPredicted RBP12.37□□□□□ -0.43
USP54-214ENST00000492357 QTRT2Q9H974 415 aaKnown RBP12.37□□□□□ -0.43
USP54-214ENST00000492357 SMC4Q9NTJ3 1288 aa12.37□□□□□ -0.43
USP54-214ENST00000492357 PTPRCP08575 1304 aa12.37□□□□□ -0.43
USP54-214ENST00000492357 NHSQ6T4R5 1651 aa12.36□□□□□ -0.43
USP54-214ENST00000492357 ZKSCAN2Q63HK3 967 aa12.36□□□□□ -0.43
USP54-214ENST00000492357 MARCH10Q8NA82 808 aaPredicted RBP12.36□□□□□ -0.43
USP54-214ENST00000492357 SSH1Q8WYL5 1049 aa12.36□□□□□ -0.43
USP54-214ENST00000492357 STK31Q9BXU1 1019 aa12.36□□□□□ -0.43
USP54-214ENST00000492357 CHMP4BQ9H444 224 aaKnown RBP12.36□□□□□ -0.43
USP54-214ENST00000492357 GIGYF1O75420 1035 aaPredicted RBP12.35□□□□□ -0.43
USP54-214ENST00000492357 SNRPA1P09661 255 aaKnown RBP12.35□□□□□ -0.43
USP54-214ENST00000492357 SMARCC1Q92922 1105 aaPredicted RBP12.35□□□□□ -0.43
USP54-214ENST00000492357 KCPQ6ZWJ8 1503 aa12.35□□□□□ -0.43
USP54-214ENST00000492357 IBTKQ9P2D0 1353 aaPredicted RBP12.34□□□□□ -0.43
USP54-214ENST00000492357 MRPL50Q8N5N7 158 aaKnown RBP12.34□□□□□ -0.43
USP54-214ENST00000492357 TSPYL6Q8N831 410 aa12.34□□□□□ -0.43
USP54-214ENST00000492357 API5Q9BZZ5 524 aaKnown RBP12.34□□□□□ -0.43
USP54-214ENST00000492357 CANXP27824 592 aaKnown RBP12.33□□□□□ -0.44
USP54-214ENST00000492357 HDGFL1Q5TGJ6 251 aa12.33□□□□□ -0.44
USP54-214ENST00000492357 ATF7IPQ6VMQ6 1270 aa12.33□□□□□ -0.44
USP54-214ENST00000492357 MIS18AQ9NYP9 233 aa12.33□□□□□ -0.44
USP54-214ENST00000492357 DBF4Q9UBU7 674 aaPredicted RBP12.33□□□□□ -0.44
USP54-214ENST00000492357 PXDNLA1KZ92 1463 aa12.33□□□□□ -0.44
USP54-214ENST00000492357 BCAR3O75815 825 aa12.32□□□□□ -0.44
USP54-214ENST00000492357 SEPT12Q8IYM1 358 aa12.32□□□□□ -0.44
USP54-214ENST00000492357 N4BP2Q86UW6 1770 aaPredicted RBP12.32□□□□□ -0.44
USP54-214ENST00000492357 PIGBQ92521 554 aa12.31□□□□□ -0.44
USP54-214ENST00000492357 ZNF496Q96IT1 587 aaPredicted RBP12.31□□□□□ -0.44
USP54-214ENST00000492357 HYPKQ9NX55 129 aa12.31□□□□□ -0.44
USP54-214ENST00000492357 SBF2Q86WG5 1849 aa12.31□□□□□ -0.44
USP54-214ENST00000492357 C5P01031 1676 aa12.31□□□□□ -0.44
USP54-214ENST00000492357 FAM196AQ6ZSG2 479 aa12.3□□□□□ -0.44
USP54-214ENST00000492357 DZIP1LQ8IYY4 767 aaKnown RBP12.3□□□□□ -0.44
USP54-214ENST00000492357 DDX21Q9NR30 783 aaKnown RBP eCLIP12.3□□□□□ -0.44
USP54-214ENST00000492357 A0A0G2JS52 829 aa12.29□□□□□ -0.44
USP54-214ENST00000492357 ELL2O00472 640 aaPredicted RBP12.29□□□□□ -0.44
USP54-214ENST00000492357 MYCNP04198 464 aaPredicted RBP12.29□□□□□ -0.44
USP54-214ENST00000492357 RXRBP28702 533 aa12.29□□□□□ -0.44
USP54-214ENST00000492357 MYT1Q01538 1121 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms