RNA–Protein interactions for RNA: ENST00000491860.1

NUP50-217, Transcript of nucleoporin 50, humanhuman

TSL 2

Gene NUP50, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-217ENST00000491860 HSPA6P17066 643 aa11.91□□□□□ -0.5
NUP50-217ENST00000491860 SSFA2P28290 1259 aa11.91□□□□□ -0.5
NUP50-217ENST00000491860 SIK1P57059 783 aa11.91□□□□□ -0.5
NUP50-217ENST00000491860 COL23A1Q86Y22 540 aaPredicted RBP11.91□□□□□ -0.5
NUP50-217ENST00000491860 ZNF831Q5JPB2 1677 aa11.91□□□□□ -0.5
NUP50-217ENST00000491860 C1orf141Q5JVX7 400 aa11.9□□□□□ -0.5
NUP50-217ENST00000491860 UBR3Q6ZT12 1888 aa11.9□□□□□ -0.5
NUP50-217ENST00000491860 GPBP1L1Q9HC44 474 aaPredicted RBP11.9□□□□□ -0.5
NUP50-217ENST00000491860 KIF7Q2M1P5 1343 aa11.88□□□□□ -0.51
NUP50-217ENST00000491860 ATP6V1AP38606 617 aa11.88□□□□□ -0.51
NUP50-217ENST00000491860 AMER1Q5JTC6 1135 aaPredicted RBP11.88□□□□□ -0.51
NUP50-217ENST00000491860 ZNF530Q6P9A1 599 aaPredicted RBP11.88□□□□□ -0.51
NUP50-217ENST00000491860 KDRP35968 1356 aa11.88□□□□□ -0.51
NUP50-217ENST00000491860 CICQ96RK0 1608 aaPredicted RBP11.87□□□□□ -0.51
NUP50-217ENST00000491860 ADRA2BP18089 450 aa11.87□□□□□ -0.51
NUP50-217ENST00000491860 MTHFSP49914 203 aa11.87□□□□□ -0.51
NUP50-217ENST00000491860 CABP4P57796 275 aa11.87□□□□□ -0.51
NUP50-217ENST00000491860 ASAP1Q9ULH1 1129 aa11.87□□□□□ -0.51
NUP50-217ENST00000491860 NPC1L1Q9UHC9 1359 aa11.87□□□□□ -0.51
NUP50-217ENST00000491860 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.86□□□□□ -0.51
NUP50-217ENST00000491860 IL13P35225 146 aa11.86□□□□□ -0.51
NUP50-217ENST00000491860 RC3H1Q5TC82 1133 aaKnown RBP11.86□□□□□ -0.51
NUP50-217ENST00000491860 SULT6B1Q6IMI4 303 aa11.86□□□□□ -0.51
NUP50-217ENST00000491860 ATG3Q9NT62 314 aa11.86□□□□□ -0.51
NUP50-217ENST00000491860 GNPATO15228 680 aa11.85□□□□□ -0.51
NUP50-217ENST00000491860 MSL1Q68DK7 614 aa11.85□□□□□ -0.51
NUP50-217ENST00000491860 LINC00116Q8NCU8 138 aa11.85□□□□□ -0.51
NUP50-217ENST00000491860 RTCBQ9Y3I0 505 aaKnown RBP11.85□□□□□ -0.51
NUP50-217ENST00000491860 PHF14O94880 888 aa11.84□□□□□ -0.51
NUP50-217ENST00000491860 AKAP4Q5JQC9 854 aa11.84□□□□□ -0.51
NUP50-217ENST00000491860 CNTNAP4Q9C0A0 1308 aa11.84□□□□□ -0.51
NUP50-217ENST00000491860 SCN11AQ9UI33 1791 aa11.83□□□□□ -0.52
NUP50-217ENST00000491860 KIF3CO14782 793 aa11.83□□□□□ -0.52
NUP50-217ENST00000491860 PER1O15534 1290 aaPredicted RBP11.83□□□□□ -0.52
NUP50-217ENST00000491860 DIAPH1O60610 1272 aaKnown RBP11.83□□□□□ -0.52
NUP50-217ENST00000491860 TRAPPC3LQ5T215 181 aa11.83□□□□□ -0.52
NUP50-217ENST00000491860 NLGN1Q8N2Q7 840 aa11.83□□□□□ -0.52
NUP50-217ENST00000491860 RBM42Q9BTD8 480 aaKnown RBP11.83□□□□□ -0.52
NUP50-217ENST00000491860 KDM6AO15550 1401 aaPredicted RBP11.83□□□□□ -0.52
NUP50-217ENST00000491860 COL5A3P25940 1745 aaPredicted RBP11.83□□□□□ -0.52
NUP50-217ENST00000491860 ITPK1Q13572 414 aa11.82□□□□□ -0.52
NUP50-217ENST00000491860 AEBP1Q8IUX7 1158 aa11.82□□□□□ -0.52
NUP50-217ENST00000491860 KIF13BQ9NQT8 1826 aa11.81□□□□□ -0.52
NUP50-217ENST00000491860 RPS6KA4O75676 772 aa11.81□□□□□ -0.52
NUP50-217ENST00000491860 APLP1P51693 650 aa11.81□□□□□ -0.52
NUP50-217ENST00000491860 RFC4P35249 363 aa11.8□□□□□ -0.52
NUP50-217ENST00000491860 CC2D1BQ5T0F9 858 aaKnown RBP11.8□□□□□ -0.52
NUP50-217ENST00000491860 NFATC2IPQ8NCF5 419 aa11.8□□□□□ -0.52
NUP50-217ENST00000491860 ZNF526Q8TF50 670 aaPredicted RBP11.8□□□□□ -0.52
NUP50-217ENST00000491860 KIAA1551Q9HCM1 1747 aa11.8□□□□□ -0.52
NUP50-217ENST00000491860 DNAJC5GQ8N7S2 189 aa11.79□□□□□ -0.52
NUP50-217ENST00000491860 CFAP53Q96M91 514 aa11.79□□□□□ -0.52
NUP50-217ENST00000491860 SLC52A2Q9HAB3 445 aa11.79□□□□□ -0.52
NUP50-217ENST00000491860 VIRMAQ69YN4 1812 aaKnown RBP11.79□□□□□ -0.52
NUP50-217ENST00000491860 MRC1P22897 1456 aa11.78□□□□□ -0.52
NUP50-217ENST00000491860 PTCD1O75127 700 aaKnown RBP11.78□□□□□ -0.52
NUP50-217ENST00000491860 TOMM70O94826 608 aa11.78□□□□□ -0.52
NUP50-217ENST00000491860 TGFB2P61812 414 aa11.78□□□□□ -0.52
NUP50-217ENST00000491860 AMIGO3Q86WK7 504 aa11.78□□□□□ -0.52
NUP50-217ENST00000491860 VSIG10Q8N0Z9 540 aa11.78□□□□□ -0.52
NUP50-217ENST00000491860 ARHGEF1Q92888 912 aaKnown RBP11.78□□□□□ -0.52
NUP50-217ENST00000491860 CCDC87Q9NVE4 849 aa11.78□□□□□ -0.52
NUP50-217ENST00000491860 MMP10P09238 476 aa11.77□□□□□ -0.53
NUP50-217ENST00000491860 GAS2L2Q8NHY3 880 aa11.77□□□□□ -0.53
NUP50-217ENST00000491860 SLC4A9Q96Q91 983 aa11.77□□□□□ -0.53
NUP50-217ENST00000491860 PARP3Q9Y6F1 533 aa11.77□□□□□ -0.53
NUP50-217ENST00000491860 MYH14Q7Z406 1995 aaKnown RBP11.77□□□□□ -0.53
NUP50-217ENST00000491860 PXDNLA1KZ92 1463 aa11.76□□□□□ -0.53
NUP50-217ENST00000491860 ADAMTS7Q9UKP4 1686 aa11.76□□□□□ -0.53
NUP50-217ENST00000491860 RNMTO43148 476 aaKnown RBP11.76□□□□□ -0.53
NUP50-217ENST00000491860 HMOX1P09601 288 aa11.76□□□□□ -0.53
NUP50-217ENST00000491860 CRKLP46109 303 aaKnown RBP11.76□□□□□ -0.53
NUP50-217ENST00000491860 NUDCQ9Y266 331 aa11.76□□□□□ -0.53
NUP50-217ENST00000491860 WDR90Q96KV7 1748 aa11.76□□□□□ -0.53
NUP50-217ENST00000491860 C4AP0C0L4 1744 aa11.75□□□□□ -0.53
NUP50-217ENST00000491860 TJP1Q07157 1748 aa11.75□□□□□ -0.53
NUP50-217ENST00000491860 GYS1P13807 737 aa11.75□□□□□ -0.53
NUP50-217ENST00000491860 MTHFSDQ2M296 383 aaKnown RBP11.75□□□□□ -0.53
NUP50-217ENST00000491860 TTC5Q8N0Z6 440 aa11.75□□□□□ -0.53
NUP50-217ENST00000491860 BRCA1P38398 1863 aaKnown RBP11.74□□□□□ -0.53
NUP50-217ENST00000491860 GNAT3A8MTJ3 354 aa11.74□□□□□ -0.53
NUP50-217ENST00000491860 U2SURPO15042 1029 aaKnown RBP11.74□□□□□ -0.53
NUP50-217ENST00000491860 ZPR1O75312 459 aa11.74□□□□□ -0.53
NUP50-217ENST00000491860 C10orf71Q711Q0 1435 aa11.74□□□□□ -0.53
NUP50-217ENST00000491860 COL3A1P02461 1466 aaPredicted RBP11.74□□□□□ -0.53
NUP50-217ENST00000491860 TEFQ10587 303 aa11.73□□□□□ -0.53
NUP50-217ENST00000491860 SMIM5Q71RC9 77 aa11.73□□□□□ -0.53
NUP50-217ENST00000491860 N4BP2Q86UW6 1770 aaPredicted RBP11.73□□□□□ -0.53
NUP50-217ENST00000491860 TEX13AQ9BXU3 409 aaPredicted RBP11.73□□□□□ -0.53
NUP50-217ENST00000491860 USP42Q9H9J4 1324 aaKnown RBP11.73□□□□□ -0.53
NUP50-217ENST00000491860 ARFGEF1Q9Y6D6 1849 aa11.72□□□□□ -0.53
NUP50-217ENST00000491860 STARD3NLO95772 234 aa11.72□□□□□ -0.53
NUP50-217ENST00000491860 JMYQ8N9B5 988 aa11.72□□□□□ -0.53
NUP50-217ENST00000491860 RBM46Q8TBY0 533 aaKnown RBP11.72□□□□□ -0.53
NUP50-217ENST00000491860 LGR6Q9HBX8 967 aa11.72□□□□□ -0.53
NUP50-217ENST00000491860 UBR2Q8IWV8 1755 aa11.72□□□□□ -0.53
NUP50-217ENST00000491860 SOS1Q07889 1333 aaPredicted RBP11.71□□□□□ -0.53
NUP50-217ENST00000491860 A0A087WZG4 1122 aa11.71□□□□□ -0.53
NUP50-217ENST00000491860 CYP19A1P11511 503 aaPredicted RBP11.71□□□□□ -0.53
NUP50-217ENST00000491860 INTS5Q6P9B9 1019 aaKnown RBP11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms