RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 MSH5O43196 834 aa20.28■□□□□ 0.84
USP39-217ENST00000491659 PPP2R1AP30153 589 aa20.28■□□□□ 0.84
USP39-217ENST00000491659 COL5A3P25940 1745 aaPredicted RBP20.27■□□□□ 0.84
USP39-217ENST00000491659 ADAMTS7Q9UKP4 1686 aa20.27■□□□□ 0.84
USP39-217ENST00000491659 SGIP1Q9BQI5 828 aa20.27■□□□□ 0.84
USP39-217ENST00000491659 MRC1P22897 1456 aa20.26■□□□□ 0.83
USP39-217ENST00000491659 POLD1P28340 1107 aa20.26■□□□□ 0.83
USP39-217ENST00000491659 ATP6V1AP38606 617 aa20.26■□□□□ 0.83
USP39-217ENST00000491659 FLAD1Q8NFF5 587 aa20.26■□□□□ 0.83
USP39-217ENST00000491659 NUDCQ9Y266 331 aa20.25■□□□□ 0.83
USP39-217ENST00000491659 MTHFSDQ2M296 383 aaKnown RBP20.24■□□□□ 0.83
USP39-217ENST00000491659 COL23A1Q86Y22 540 aaPredicted RBP20.24■□□□□ 0.83
USP39-217ENST00000491659 LINC00116Q8NCU8 138 aa20.24■□□□□ 0.83
USP39-217ENST00000491659 ARXQ96QS3 562 aa20.24■□□□□ 0.83
USP39-217ENST00000491659 RBM42Q9BTD8 480 aaKnown RBP20.24■□□□□ 0.83
USP39-217ENST00000491659 CICQ96RK0 1608 aaPredicted RBP20.24■□□□□ 0.83
USP39-217ENST00000491659 ITPK1Q13572 414 aa20.23■□□□□ 0.83
USP39-217ENST00000491659 NFATC2IPQ8NCF5 419 aa20.23■□□□□ 0.83
USP39-217ENST00000491659 DCAF8L1A6NGE4 600 aa20.22■□□□□ 0.83
USP39-217ENST00000491659 FHDC1Q9C0D6 1143 aaPredicted RBP20.22■□□□□ 0.83
USP39-217ENST00000491659 TJP1Q07157 1748 aa20.22■□□□□ 0.83
USP39-217ENST00000491659 GAS2L2Q8NHY3 880 aa20.21■□□□□ 0.83
USP39-217ENST00000491659 SLC52A2Q9HAB3 445 aa20.21■□□□□ 0.83
USP39-217ENST00000491659 RNMTO43148 476 aaKnown RBP20.2■□□□□ 0.82
USP39-217ENST00000491659 PHF14O94880 888 aa20.2■□□□□ 0.82
USP39-217ENST00000491659 SSFA2P28290 1259 aa20.2■□□□□ 0.82
USP39-217ENST00000491659 MAP3K5Q99683 1374 aa20.2■□□□□ 0.82
USP39-217ENST00000491659 GNPATO15228 680 aa20.19■□□□□ 0.82
USP39-217ENST00000491659 LGR6Q9HBX8 967 aa20.19■□□□□ 0.82
USP39-217ENST00000491659 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.18■□□□□ 0.82
USP39-217ENST00000491659 U2AF1L5P0DN76 240 aaPredicted RBP20.18■□□□□ 0.82
USP39-217ENST00000491659 PRKAR2BP31323 418 aa20.18■□□□□ 0.82
USP39-217ENST00000491659 U2AF1Q01081 240 aaKnown RBP eCLIP20.18■□□□□ 0.82
USP39-217ENST00000491659 SLC4A9Q96Q91 983 aa20.18■□□□□ 0.82
USP39-217ENST00000491659 SYT17Q9BSW7 474 aa20.18■□□□□ 0.82
USP39-217ENST00000491659 RSPH6AQ9H0K4 717 aa20.18■□□□□ 0.82
USP39-217ENST00000491659 SIPA1L3O60292 1781 aaPredicted RBP20.18■□□□□ 0.82
USP39-217ENST00000491659 UBR2Q8IWV8 1755 aa20.17■□□□□ 0.82
USP39-217ENST00000491659 PTCD1O75127 700 aaKnown RBP20.17■□□□□ 0.82
USP39-217ENST00000491659 MSL1Q68DK7 614 aa20.17■□□□□ 0.82
USP39-217ENST00000491659 KLHL34Q8N239 644 aa20.17■□□□□ 0.82
USP39-217ENST00000491659 GNAT3A8MTJ3 354 aa20.16■□□□□ 0.82
USP39-217ENST00000491659 AMIGO3Q86WK7 504 aa20.16■□□□□ 0.82
USP39-217ENST00000491659 CNTNAP4Q9C0A0 1308 aa20.16■□□□□ 0.82
USP39-217ENST00000491659 C4AP0C0L4 1744 aa20.16■□□□□ 0.82
USP39-217ENST00000491659 RTCBQ9Y3I0 505 aaKnown RBP20.15■□□□□ 0.82
USP39-217ENST00000491659 MYH14Q7Z406 1995 aaKnown RBP20.15■□□□□ 0.82
USP39-217ENST00000491659 KCPQ6ZWJ8 1503 aa20.14■□□□□ 0.81
USP39-217ENST00000491659 ZEB1P37275 1124 aaPredicted RBP20.14■□□□□ 0.81
USP39-217ENST00000491659 DDX10Q13206 875 aaKnown RBP20.14■□□□□ 0.81
USP39-217ENST00000491659 RC3H1Q5TC82 1133 aaKnown RBP20.14■□□□□ 0.81
USP39-217ENST00000491659 FCHSD2O94868 740 aa20.13■□□□□ 0.81
USP39-217ENST00000491659 RALBP1Q15311 655 aa20.13■□□□□ 0.81
USP39-217ENST00000491659 SMIM5Q71RC9 77 aa20.13■□□□□ 0.81
USP39-217ENST00000491659 TEFQ10587 303 aa20.12■□□□□ 0.81
USP39-217ENST00000491659 PHACTR3Q96KR7 559 aa20.12■□□□□ 0.81
USP39-217ENST00000491659 ADRA2BP18089 450 aa20.11■□□□□ 0.81
USP39-217ENST00000491659 SLC39A6Q13433 755 aa20.11■□□□□ 0.81
USP39-217ENST00000491659 TRAPPC3LQ5T215 181 aa20.11■□□□□ 0.81
USP39-217ENST00000491659 NEFMP07197 916 aa20.1■□□□□ 0.81
USP39-217ENST00000491659 TTC5Q8N0Z6 440 aa20.1■□□□□ 0.81
USP39-217ENST00000491659 RPS6KA4O75676 772 aa20.09■□□□□ 0.81
USP39-217ENST00000491659 CRKLP46109 303 aaKnown RBP20.09■□□□□ 0.81
USP39-217ENST00000491659 DLG5Q8TDM6 1919 aa20.09■□□□□ 0.81
USP39-217ENST00000491659 CEMIPQ8WUJ3 1361 aa20.08■□□□□ 0.81
USP39-217ENST00000491659 IL17REQ8NFR9 667 aa20.08■□□□□ 0.81
USP39-217ENST00000491659 DNAJC10Q8IXB1 793 aa20.07■□□□□ 0.8
USP39-217ENST00000491659 RTF1Q92541 710 aaKnown RBP20.07■□□□□ 0.8
USP39-217ENST00000491659 RFC4P35249 363 aa20.06■□□□□ 0.8
USP39-217ENST00000491659 VSIG10Q8N0Z9 540 aa20.06■□□□□ 0.8
USP39-217ENST00000491659 ARHGEF1Q92888 912 aaKnown RBP20.05■□□□□ 0.8
USP39-217ENST00000491659 CCDC87Q9NVE4 849 aa20.05■□□□□ 0.8
USP39-217ENST00000491659 MYBBP1AQ9BQG0 1328 aaKnown RBP20.04■□□□□ 0.8
USP39-217ENST00000491659 ZNF790Q6PG37 636 aa20.04■□□□□ 0.8
USP39-217ENST00000491659 NLGN2Q8NFZ4 835 aa20.04■□□□□ 0.8
USP39-217ENST00000491659 PNNQ9H307 717 aaKnown RBP20.04■□□□□ 0.8
USP39-217ENST00000491659 CD2APQ9Y5K6 639 aa20.04■□□□□ 0.8
USP39-217ENST00000491659 CHD4Q14839 1912 aa20.04■□□□□ 0.8
USP39-217ENST00000491659 NLGN1Q8N2Q7 840 aa20.03■□□□□ 0.8
USP39-217ENST00000491659 MAPK8IP3Q9UPT6 1336 aa20.02■□□□□ 0.8
USP39-217ENST00000491659 BTBD11A6QL63 1104 aa20.02■□□□□ 0.8
USP39-217ENST00000491659 HTATSF1O43719 755 aaKnown RBP20.02■□□□□ 0.8
USP39-217ENST00000491659 CYP19A1P11511 503 aaPredicted RBP20.02■□□□□ 0.8
USP39-217ENST00000491659 GPR162Q16538 588 aa20.02■□□□□ 0.8
USP39-217ENST00000491659 INTS5Q6P9B9 1019 aaKnown RBP20.02■□□□□ 0.8
USP39-217ENST00000491659 MCM10Q7L590 875 aa20.02■□□□□ 0.8
USP39-217ENST00000491659 HEG1Q9ULI3 1381 aa20.02■□□□□ 0.8
USP39-217ENST00000491659 MMP10P09238 476 aa20.01■□□□□ 0.79
USP39-217ENST00000491659 PELP1Q8IZL8 1130 aaKnown RBP20.01■□□□□ 0.79
USP39-217ENST00000491659 ZNF496Q96IT1 587 aaPredicted RBP20.01■□□□□ 0.79
USP39-217ENST00000491659 FMNL2Q96PY5 1086 aa20.01■□□□□ 0.79
USP39-217ENST00000491659 KIF13BQ9NQT8 1826 aa20.01■□□□□ 0.79
USP39-217ENST00000491659 SOS1Q07889 1333 aaPredicted RBP20.01■□□□□ 0.79
USP39-217ENST00000491659 COL15A1P39059 1388 aa20■□□□□ 0.79
USP39-217ENST00000491659 GYS1P13807 737 aa20■□□□□ 0.79
USP39-217ENST00000491659 YY1P25490 414 aa20■□□□□ 0.79
USP39-217ENST00000491659 USP42Q9H9J4 1324 aaKnown RBP20■□□□□ 0.79
USP39-217ENST00000491659 STARD3NLO95772 234 aa19.99■□□□□ 0.79
USP39-217ENST00000491659 TEX13AQ9BXU3 409 aaPredicted RBP19.99■□□□□ 0.79
USP39-217ENST00000491659 ZBTB1Q9Y2K1 713 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms