RNA–Protein interactions for RNA: ENST00000491330.1

PDLIM2-217, Transcript of PDZ and LIM domain 2, humanhuman

TSL 3

Gene PDLIM2, Length 563 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-217ENST00000491330 NUDCQ9Y266 331 aa22.27■■□□□ 1.16
PDLIM2-217ENST00000491330 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.26■■□□□ 1.15
PDLIM2-217ENST00000491330 U2SURPO15042 1029 aaKnown RBP22.26■■□□□ 1.15
PDLIM2-217ENST00000491330 KDRP35968 1356 aa22.25■■□□□ 1.15
PDLIM2-217ENST00000491330 GNPATO15228 680 aa22.25■■□□□ 1.15
PDLIM2-217ENST00000491330 HMOX1P09601 288 aa22.25■■□□□ 1.15
PDLIM2-217ENST00000491330 RTCBQ9Y3I0 505 aaKnown RBP22.25■■□□□ 1.15
PDLIM2-217ENST00000491330 PELP1Q8IZL8 1130 aaKnown RBP22.24■■□□□ 1.15
PDLIM2-217ENST00000491330 NFATC2IPQ8NCF5 419 aa22.24■■□□□ 1.15
PDLIM2-217ENST00000491330 TRAPPC3LQ5T215 181 aa22.23■■□□□ 1.15
PDLIM2-217ENST00000491330 MSL1Q68DK7 614 aa22.23■■□□□ 1.15
PDLIM2-217ENST00000491330 RC3H1Q5TC82 1133 aaKnown RBP22.21■■□□□ 1.15
PDLIM2-217ENST00000491330 LINC00116Q8NCU8 138 aa22.21■■□□□ 1.15
PDLIM2-217ENST00000491330 QSER1Q2KHR3 1735 aa22.2■■□□□ 1.14
PDLIM2-217ENST00000491330 PTCD1O75127 700 aaKnown RBP22.2■■□□□ 1.14
PDLIM2-217ENST00000491330 ADRA2BP18089 450 aa22.2■■□□□ 1.14
PDLIM2-217ENST00000491330 CD2APQ9Y5K6 639 aa22.2■■□□□ 1.14
PDLIM2-217ENST00000491330 GRIN3BO60391 1043 aa22.19■■□□□ 1.14
PDLIM2-217ENST00000491330 GAS2L2Q8NHY3 880 aa22.19■■□□□ 1.14
PDLIM2-217ENST00000491330 NEFMP07197 916 aa22.18■■□□□ 1.14
PDLIM2-217ENST00000491330 RFC4P35249 363 aa22.18■■□□□ 1.14
PDLIM2-217ENST00000491330 ITPK1Q13572 414 aa22.18■■□□□ 1.14
PDLIM2-217ENST00000491330 NLGN1Q8N2Q7 840 aa22.18■■□□□ 1.14
PDLIM2-217ENST00000491330 C5P01031 1676 aa22.17■■□□□ 1.14
PDLIM2-217ENST00000491330 SLC52A2Q9HAB3 445 aa22.17■■□□□ 1.14
PDLIM2-217ENST00000491330 ITGB4P16144 1822 aa22.16■■□□□ 1.14
PDLIM2-217ENST00000491330 TOGARAM1Q9Y4F4 1720 aa22.16■■□□□ 1.14
PDLIM2-217ENST00000491330 C4BP0C0L5 1744 aa22.15■■□□□ 1.14
PDLIM2-217ENST00000491330 CNTNAP4Q9C0A0 1308 aa22.15■■□□□ 1.14
PDLIM2-217ENST00000491330 RNMTO43148 476 aaKnown RBP22.15■■□□□ 1.14
PDLIM2-217ENST00000491330 TEFQ10587 303 aa22.15■■□□□ 1.14
PDLIM2-217ENST00000491330 TTC5Q8N0Z6 440 aa22.15■■□□□ 1.14
PDLIM2-217ENST00000491330 KDM6AO15550 1401 aaPredicted RBP22.14■■□□□ 1.14
PDLIM2-217ENST00000491330 RPS6KA4O75676 772 aa22.14■■□□□ 1.13
PDLIM2-217ENST00000491330 MTHFSDQ2M296 383 aaKnown RBP22.14■■□□□ 1.13
PDLIM2-217ENST00000491330 GNAT3A8MTJ3 354 aa22.13■■□□□ 1.13
PDLIM2-217ENST00000491330 ZEB1P37275 1124 aaPredicted RBP22.13■■□□□ 1.13
PDLIM2-217ENST00000491330 U2AF1L5P0DN76 240 aaPredicted RBP22.11■■□□□ 1.13
PDLIM2-217ENST00000491330 U2AF1Q01081 240 aaKnown RBP eCLIP22.11■■□□□ 1.13
PDLIM2-217ENST00000491330 NPM2Q86SE8 214 aaKnown RBP22.11■■□□□ 1.13
PDLIM2-217ENST00000491330 LGR6Q9HBX8 967 aa22.11■■□□□ 1.13
PDLIM2-217ENST00000491330 RTF1Q92541 710 aaKnown RBP22.1■■□□□ 1.13
PDLIM2-217ENST00000491330 PPP2R1AP30153 589 aa22.09■■□□□ 1.13
PDLIM2-217ENST00000491330 CRKLP46109 303 aaKnown RBP22.09■■□□□ 1.13
PDLIM2-217ENST00000491330 NLGN2Q8NFZ4 835 aa22.09■■□□□ 1.13
PDLIM2-217ENST00000491330 ARHGEF1Q92888 912 aaKnown RBP22.09■■□□□ 1.13
PDLIM2-217ENST00000491330 ZPR1O75312 459 aa22.08■■□□□ 1.13
PDLIM2-217ENST00000491330 MMP10P09238 476 aa22.08■■□□□ 1.13
PDLIM2-217ENST00000491330 PNNQ9H307 717 aaKnown RBP22.08■■□□□ 1.13
PDLIM2-217ENST00000491330 PARP3Q9Y6F1 533 aa22.08■■□□□ 1.13
PDLIM2-217ENST00000491330 FCHSD2O94868 740 aa22.07■■□□□ 1.12
PDLIM2-217ENST00000491330 STARD3NLO95772 234 aa22.07■■□□□ 1.12
PDLIM2-217ENST00000491330 PRKAR2BP31323 418 aa22.07■■□□□ 1.12
PDLIM2-217ENST00000491330 VSIG10Q8N0Z9 540 aa22.07■■□□□ 1.12
PDLIM2-217ENST00000491330 SLC4A9Q96Q91 983 aa22.07■■□□□ 1.12
PDLIM2-217ENST00000491330 TEX13AQ9BXU3 409 aaPredicted RBP22.07■■□□□ 1.12
PDLIM2-217ENST00000491330 CCDC87Q9NVE4 849 aa22.07■■□□□ 1.12
PDLIM2-217ENST00000491330 SMIM5Q71RC9 77 aa22.06■■□□□ 1.12
PDLIM2-217ENST00000491330 TAF1LQ8IZX4 1826 aa22.06■■□□□ 1.12
PDLIM2-217ENST00000491330 TUBGCP6Q96RT7 1819 aa22.04■■□□□ 1.12
PDLIM2-217ENST00000491330 SLC39A6Q13433 755 aa22.04■■□□□ 1.12
PDLIM2-217ENST00000491330 AMIGO3Q86WK7 504 aa22.04■■□□□ 1.12
PDLIM2-217ENST00000491330 TGFB2P61812 414 aa22.03■■□□□ 1.12
PDLIM2-217ENST00000491330 DNAJC10Q8IXB1 793 aa22.03■■□□□ 1.12
PDLIM2-217ENST00000491330 ZNF831Q5JPB2 1677 aa22.01■■□□□ 1.11
PDLIM2-217ENST00000491330 A0A087WZG4 1122 aa22.01■■□□□ 1.11
PDLIM2-217ENST00000491330 GYS1P13807 737 aa22.01■■□□□ 1.11
PDLIM2-217ENST00000491330 COL24A1Q17RW2 1714 aa22■■□□□ 1.11
PDLIM2-217ENST00000491330 FMNL2Q96PY5 1086 aa22■■□□□ 1.11
PDLIM2-217ENST00000491330 RSPH6AQ9H0K4 717 aa22■■□□□ 1.11
PDLIM2-217ENST00000491330 COL3A1P02461 1466 aaPredicted RBP21.99■■□□□ 1.11
PDLIM2-217ENST00000491330 BTBD11A6QL63 1104 aa21.99■■□□□ 1.11
PDLIM2-217ENST00000491330 HTATSF1O43719 755 aaKnown RBP21.99■■□□□ 1.11
PDLIM2-217ENST00000491330 CYP19A1P11511 503 aaPredicted RBP21.99■■□□□ 1.11
PDLIM2-217ENST00000491330 ZNF790Q6PG37 636 aa21.99■■□□□ 1.11
PDLIM2-217ENST00000491330 ZNF784Q8NCA9 323 aaPredicted RBP21.99■■□□□ 1.11
PDLIM2-217ENST00000491330 UBR3Q6ZT12 1888 aa21.98■■□□□ 1.11
PDLIM2-217ENST00000491330 RALBP1Q15311 655 aa21.98■■□□□ 1.11
PDLIM2-217ENST00000491330 INTS5Q6P9B9 1019 aaKnown RBP21.98■■□□□ 1.11
PDLIM2-217ENST00000491330 IL17REQ8NFR9 667 aa21.98■■□□□ 1.11
PDLIM2-217ENST00000491330 USP42Q9H9J4 1324 aaKnown RBP21.98■■□□□ 1.11
PDLIM2-217ENST00000491330 PHACTR3Q96KR7 559 aa21.97■■□□□ 1.11
PDLIM2-217ENST00000491330 MRC1P22897 1456 aa21.96■■□□□ 1.11
PDLIM2-217ENST00000491330 YBX3P16989 372 aaKnown RBP eCLIP21.96■■□□□ 1.11
PDLIM2-217ENST00000491330 SCN11AQ9UI33 1791 aa21.95■■□□□ 1.1
PDLIM2-217ENST00000491330 CANXP27824 592 aaKnown RBP21.95■■□□□ 1.1
PDLIM2-217ENST00000491330 MAPK8IP3Q9UPT6 1336 aa21.95■■□□□ 1.1
PDLIM2-217ENST00000491330 SRP68Q9UHB9 627 aaKnown RBP21.94■■□□□ 1.1
PDLIM2-217ENST00000491330 NARFQ9UHQ1 456 aa21.94■■□□□ 1.1
PDLIM2-217ENST00000491330 SOS1Q07889 1333 aaPredicted RBP21.93■■□□□ 1.1
PDLIM2-217ENST00000491330 USPL1Q5W0Q7 1092 aa21.93■■□□□ 1.1
PDLIM2-217ENST00000491330 ZNF496Q96IT1 587 aaPredicted RBP21.93■■□□□ 1.1
PDLIM2-217ENST00000491330 HEG1Q9ULI3 1381 aa21.92■■□□□ 1.1
PDLIM2-217ENST00000491330 FKBP8Q14318 412 aa21.92■■□□□ 1.1
PDLIM2-217ENST00000491330 PNISRQ8TF01 805 aaKnown RBP21.92■■□□□ 1.1
PDLIM2-217ENST00000491330 ZNF330Q9Y3S2 320 aaPredicted RBP21.92■■□□□ 1.1
PDLIM2-217ENST00000491330 COL15A1P39059 1388 aa21.91■■□□□ 1.1
PDLIM2-217ENST00000491330 BCS1LQ9Y276 419 aa21.91■■□□□ 1.1
PDLIM2-217ENST00000491330 ZBTB1Q9Y2K1 713 aa21.91■■□□□ 1.1
PDLIM2-217ENST00000491330 CEMIPQ8WUJ3 1361 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms