RNA–Protein interactions for RNA: ENST00000491075.1

CLIP2-208, Transcript of CAP-Gly domain containing linker protein 2, human

TSL 1 (best)

Gene CLIP2, Length 551 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLIP2-208	ENST00000491075	WWC3	Q9ULE0	1092 aa		28.6	■■■□□ 2.17
CLIP2-208	ENST00000491075	KIAA1551	Q9HCM1	1747 aa		28.6	■■■□□ 2.17
CLIP2-208	ENST00000491075	HSPA6	P17066	643 aa		28.58	■■■□□ 2.17
CLIP2-208	ENST00000491075	POLK	Q9UBT6	870 aa		28.58	■■■□□ 2.17
CLIP2-208	ENST00000491075	COL5A3	P25940	1745 aa	Predicted RBP	28.57	■■■□□ 2.16
CLIP2-208	ENST00000491075	KDR	P35968	1356 aa		28.57	■■■□□ 2.16
CLIP2-208	ENST00000491075	N4BP2	Q86UW6	1770 aa	Predicted RBP	28.56	■■■□□ 2.16
CLIP2-208	ENST00000491075	ATG3	Q9NT62	314 aa		28.56	■■■□□ 2.16
CLIP2-208	ENST00000491075	PXDNL	A1KZ92	1463 aa		28.55	■■■□□ 2.16
CLIP2-208	ENST00000491075	MMP10	P09238	476 aa		28.55	■■■□□ 2.16
CLIP2-208	ENST00000491075	EIF4A2	Q14240	407 aa	Known RBP	28.53	■■■□□ 2.16
CLIP2-208	ENST00000491075	RTCB	Q9Y3I0	505 aa	Known RBP	28.52	■■■□□ 2.16
CLIP2-208	ENST00000491075	C4A	P0C0L4	1744 aa		28.51	■■■□□ 2.15
CLIP2-208	ENST00000491075	C10orf71	Q711Q0	1435 aa		28.51	■■■□□ 2.15
CLIP2-208	ENST00000491075	ERVV-2	B6SEH9	535 aa		28.5	■■■□□ 2.15
CLIP2-208	ENST00000491075	TRAPPC3L	Q5T215	181 aa		28.5	■■■□□ 2.15
CLIP2-208	ENST00000491075	NLGN1	Q8N2Q7	840 aa		28.5	■■■□□ 2.15
CLIP2-208	ENST00000491075	BRCA1	P38398	1863 aa	Known RBP	28.49	■■■□□ 2.15
CLIP2-208	ENST00000491075	HSP90AB1	P08238	724 aa	Known RBP	28.49	■■■□□ 2.15
CLIP2-208	ENST00000491075	ADRA2B	P18089	450 aa		28.49	■■■□□ 2.15
CLIP2-208	ENST00000491075	TGFB2	P61812	414 aa		28.49	■■■□□ 2.15
CLIP2-208	ENST00000491075	KIF3C	O14782	793 aa		28.48	■■■□□ 2.15
CLIP2-208	ENST00000491075	DCAF5	Q96JK2	942 aa		28.48	■■■□□ 2.15
CLIP2-208	ENST00000491075	CNTNAP4	Q9C0A0	1308 aa		28.47	■■■□□ 2.15
CLIP2-208	ENST00000491075	TNNT2	P45379	298 aa	Predicted RBP	28.47	■■■□□ 2.15
CLIP2-208	ENST00000491075	RC3H1	Q5TC82	1133 aa	Known RBP	28.47	■■■□□ 2.15
CLIP2-208	ENST00000491075	RBM42	Q9BTD8	480 aa	Known RBP	28.47	■■■□□ 2.15
CLIP2-208	ENST00000491075	TIMELESS	Q9UNS1	1208 aa		28.47	■■■□□ 2.15
CLIP2-208	ENST00000491075	SLC4A9	Q96Q91	983 aa		28.46	■■■□□ 2.15
CLIP2-208	ENST00000491075	MYH14	Q7Z406	1995 aa	Known RBP	28.45	■■■□□ 2.14
CLIP2-208	ENST00000491075	BCS1L	Q9Y276	419 aa		28.45	■■■□□ 2.14
CLIP2-208	ENST00000491075	CCDC87	Q9NVE4	849 aa		28.44	■■■□□ 2.14
CLIP2-208	ENST00000491075	KDM6A	O15550	1401 aa	Predicted RBP	28.43	■■■□□ 2.14
CLIP2-208	ENST00000491075	ARFGEF1	Q9Y6D6	1849 aa		28.43	■■■□□ 2.14
CLIP2-208	ENST00000491075	PLEKHO1	Q53GL0	409 aa	Predicted RBP	28.43	■■■□□ 2.14
CLIP2-208	ENST00000491075	ARHGEF1	Q92888	912 aa	Known RBP	28.43	■■■□□ 2.14
CLIP2-208	ENST00000491075		A0A0G2JLW4	131 aa		28.42	■■■□□ 2.14
CLIP2-208	ENST00000491075	RPS6KA4	O75676	772 aa		28.42	■■■□□ 2.14
CLIP2-208	ENST00000491075	RFC4	P35249	363 aa		28.42	■■■□□ 2.14
CLIP2-208	ENST00000491075	TRIM26	Q12899	539 aa	Predicted RBP	28.42	■■■□□ 2.14
CLIP2-208	ENST00000491075	POLR3GL	Q9BT43	218 aa		28.42	■■■□□ 2.14
CLIP2-208	ENST00000491075	GYS1	P13807	737 aa		28.41	■■■□□ 2.14
CLIP2-208	ENST00000491075	AMOT	Q4VCS5	1084 aa		28.4	■■■□□ 2.14
CLIP2-208	ENST00000491075	ZNF530	Q6P9A1	599 aa	Predicted RBP	28.4	■■■□□ 2.14
CLIP2-208	ENST00000491075	PARP3	Q9Y6F1	533 aa		28.4	■■■□□ 2.14
CLIP2-208	ENST00000491075	CABP4	P57796	275 aa		28.39	■■■□□ 2.14
CLIP2-208	ENST00000491075	DPEP1	P16444	411 aa		28.37	■■■□□ 2.13
CLIP2-208	ENST00000491075	ARHGAP27	Q6ZUM4	889 aa		28.37	■■■□□ 2.13
CLIP2-208	ENST00000491075	TJP1	Q07157	1748 aa		28.37	■■■□□ 2.13
CLIP2-208	ENST00000491075	TOMM70	O94826	608 aa		28.36	■■■□□ 2.13
CLIP2-208	ENST00000491075	FCHSD2	O94868	740 aa		28.36	■■■□□ 2.13
CLIP2-208	ENST00000491075	APLP1	P51693	650 aa		28.36	■■■□□ 2.13
CLIP2-208	ENST00000491075	SCN11A	Q9UI33	1791 aa		28.35	■■■□□ 2.13
CLIP2-208	ENST00000491075	C1orf141	Q5JVX7	400 aa		28.35	■■■□□ 2.13
CLIP2-208	ENST00000491075	MTHFS	P49914	203 aa		28.34	■■■□□ 2.13
CLIP2-208	ENST00000491075	PTCD1	O75127	700 aa	Known RBP	28.32	■■■□□ 2.12
CLIP2-208	ENST00000491075	CLSPN	Q9HAW4	1339 aa		28.32	■■■□□ 2.12
CLIP2-208	ENST00000491075	CRKL	P46109	303 aa	Known RBP	28.31	■■■□□ 2.12
CLIP2-208	ENST00000491075	PANK3	Q9H999	370 aa		28.31	■■■□□ 2.12
CLIP2-208	ENST00000491075	KCNA3	P22001	575 aa		28.3	■■■□□ 2.12
CLIP2-208	ENST00000491075	AEBP1	Q8IUX7	1158 aa		28.3	■■■□□ 2.12
CLIP2-208	ENST00000491075	WDR90	Q96KV7	1748 aa		28.29	■■■□□ 2.12
CLIP2-208	ENST00000491075	ADAMTS7	Q9UKP4	1686 aa		28.29	■■■□□ 2.12
CLIP2-208	ENST00000491075	USP42	Q9H9J4	1324 aa	Known RBP	28.29	■■■□□ 2.12
CLIP2-208	ENST00000491075	NMRK2	Q9NPI5	230 aa		28.29	■■■□□ 2.12
CLIP2-208	ENST00000491075	PIM2	Q9P1W9	311 aa		28.29	■■■□□ 2.12
CLIP2-208	ENST00000491075	NFATC2IP	Q8NCF5	419 aa		28.28	■■■□□ 2.12
CLIP2-208	ENST00000491075	EIF4G2	P78344	907 aa	Known RBP eCLIP	28.27	■■■□□ 2.12
CLIP2-208	ENST00000491075	C9orf131	Q5VYM1	1079 aa		28.27	■■■□□ 2.12
CLIP2-208	ENST00000491075	SRP68	Q9UHB9	627 aa	Known RBP	28.27	■■■□□ 2.12
CLIP2-208	ENST00000491075	MORC1	Q86VD1	984 aa		28.26	■■■□□ 2.11
CLIP2-208	ENST00000491075	VIRMA	Q69YN4	1812 aa	Known RBP	28.26	■■■□□ 2.11
CLIP2-208	ENST00000491075	FKBP8	Q14318	412 aa		28.25	■■■□□ 2.11
CLIP2-208	ENST00000491075	DALRD3	Q5D0E6	543 aa	Known RBP	28.25	■■■□□ 2.11
CLIP2-208	ENST00000491075	SULT6B1	Q6IMI4	303 aa		28.25	■■■□□ 2.11
CLIP2-208	ENST00000491075	SBF1	O95248	1867 aa		28.24	■■■□□ 2.11
CLIP2-208	ENST00000491075	TNRC6C	Q9HCJ0	1690 aa	Known RBP	28.24	■■■□□ 2.11
CLIP2-208	ENST00000491075	DDR1	Q08345	913 aa		28.24	■■■□□ 2.11
CLIP2-208	ENST00000491075	RBM46	Q8TBY0	533 aa	Known RBP	28.24	■■■□□ 2.11
CLIP2-208	ENST00000491075	DNAJC5G	Q8N7S2	189 aa		28.23	■■■□□ 2.11
CLIP2-208	ENST00000491075	HSPA5	P11021	654 aa	Known RBP	28.22	■■■□□ 2.11
CLIP2-208	ENST00000491075	C16orf71	Q8IYS4	520 aa	Predicted RBP	28.22	■■■□□ 2.11
CLIP2-208	ENST00000491075	INTS5	Q6P9B9	1019 aa	Known RBP	28.21	■■■□□ 2.11
CLIP2-208	ENST00000491075	KCP	Q6ZWJ8	1503 aa		28.21	■■■□□ 2.11
CLIP2-208	ENST00000491075	MRC1	P22897	1456 aa		28.21	■■■□□ 2.11
CLIP2-208	ENST00000491075	KDM2B	Q8NHM5	1336 aa		28.2	■■■□□ 2.11
CLIP2-208	ENST00000491075	AFDN	P55196	1824 aa	Known RBP	28.2	■■■□□ 2.1
CLIP2-208	ENST00000491075	POLRMT	O00411	1230 aa	Known RBP	28.19	■■■□□ 2.1
CLIP2-208	ENST00000491075	AKAP4	Q5JQC9	854 aa		28.19	■■■□□ 2.1
CLIP2-208	ENST00000491075	RNF181	Q9P0P0	153 aa		28.19	■■■□□ 2.1
CLIP2-208	ENST00000491075	IL13	P35225	146 aa		28.18	■■■□□ 2.1
CLIP2-208	ENST00000491075	DLEC1	Q9Y238	1755 aa		28.18	■■■□□ 2.1
CLIP2-208	ENST00000491075	NRXN2	Q9P2S2	1712 aa		28.18	■■■□□ 2.1
CLIP2-208	ENST00000491075	ZPR1	O75312	459 aa		28.17	■■■□□ 2.1
CLIP2-208	ENST00000491075	TM4SF1	P30408	202 aa		28.17	■■■□□ 2.1
CLIP2-208	ENST00000491075	CHRNA5	P30532	468 aa		28.17	■■■□□ 2.1
CLIP2-208	ENST00000491075	FSTL1	Q12841	308 aa		28.17	■■■□□ 2.1
CLIP2-208	ENST00000491075	SOS1	Q07889	1333 aa	Predicted RBP	28.17	■■■□□ 2.1
CLIP2-208	ENST00000491075	SLC52A2	Q9HAB3	445 aa		28.16	■■■□□ 2.1
CLIP2-208	ENST00000491075	KNSTRN	Q9Y448	316 aa		28.16	■■■□□ 2.1

Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms