RNA–Protein interactions for RNA: ENST00000490851.5

HDAC9-225, Transcript of histone deacetylase 9, humanhuman

TSL 2

Gene HDAC9, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-225ENST00000490851 TEFQ10587 303 aa12.79□□□□□ -0.36
HDAC9-225ENST00000490851 STRN4Q9NRL3 753 aa12.79□□□□□ -0.36
HDAC9-225ENST00000490851 NCAPD2Q15021 1401 aa12.79□□□□□ -0.36
HDAC9-225ENST00000490851 CPDO75976 1380 aa12.78□□□□□ -0.36
HDAC9-225ENST00000490851 TATP17735 454 aaPredicted RBP12.78□□□□□ -0.36
HDAC9-225ENST00000490851 DDX19BQ9UMR2 479 aa12.78□□□□□ -0.36
HDAC9-225ENST00000490851 NHSL1Q5SYE7 1610 aa12.78□□□□□ -0.36
HDAC9-225ENST00000490851 CAMTA1Q9Y6Y1 1673 aa12.78□□□□□ -0.36
HDAC9-225ENST00000490851 TOM1L2Q6ZVM7 507 aa12.78□□□□□ -0.36
HDAC9-225ENST00000490851 RBM19Q9Y4C8 960 aaKnown RBP12.78□□□□□ -0.36
HDAC9-225ENST00000490851 MEGF6O75095 1541 aa12.77□□□□□ -0.36
HDAC9-225ENST00000490851 SLC4A2P04920 1241 aa12.77□□□□□ -0.37
HDAC9-225ENST00000490851 ROBO1Q9Y6N7 1651 aa12.77□□□□□ -0.37
HDAC9-225ENST00000490851 CEMIPQ8WUJ3 1361 aa12.77□□□□□ -0.37
HDAC9-225ENST00000490851 RNMTO43148 476 aaKnown RBP12.77□□□□□ -0.37
HDAC9-225ENST00000490851 KCNQ3O43525 872 aa12.77□□□□□ -0.37
HDAC9-225ENST00000490851 RGS3P49796 1198 aa12.77□□□□□ -0.37
HDAC9-225ENST00000490851 BRPF1P55201 1214 aaPredicted RBP12.77□□□□□ -0.37
HDAC9-225ENST00000490851 PIP4K2BP78356 416 aa12.76□□□□□ -0.37
HDAC9-225ENST00000490851 LMO7Q8WWI1 1683 aa12.76□□□□□ -0.37
HDAC9-225ENST00000490851 LTBP4Q8N2S1 1624 aa12.76□□□□□ -0.37
HDAC9-225ENST00000490851 BTBD11A6QL63 1104 aa12.76□□□□□ -0.37
HDAC9-225ENST00000490851 FAM208AQ9UK61 1670 aaKnown RBP12.75□□□□□ -0.37
HDAC9-225ENST00000490851 ABCA3Q99758 1704 aa12.75□□□□□ -0.37
HDAC9-225ENST00000490851 G2E3Q7L622 706 aa12.75□□□□□ -0.37
HDAC9-225ENST00000490851 ARHGAP45Q92619 1136 aa12.75□□□□□ -0.37
HDAC9-225ENST00000490851 API5Q9BZZ5 524 aaKnown RBP12.75□□□□□ -0.37
HDAC9-225ENST00000490851 C1orf115Q9H7X2 142 aa12.75□□□□□ -0.37
HDAC9-225ENST00000490851 USP35Q9P2H5 1018 aa12.75□□□□□ -0.37
HDAC9-225ENST00000490851 EVA1CP58658 441 aa12.74□□□□□ -0.37
HDAC9-225ENST00000490851 STK31Q9BXU1 1019 aa12.74□□□□□ -0.37
HDAC9-225ENST00000490851 SPG7Q9UQ90 795 aa12.74□□□□□ -0.37
HDAC9-225ENST00000490851 EIF2S2P20042 333 aaKnown RBP12.74□□□□□ -0.37
HDAC9-225ENST00000490851 ABCC4O15439 1325 aa12.74□□□□□ -0.37
HDAC9-225ENST00000490851 WDR17Q8IZU2 1322 aa12.74□□□□□ -0.37
HDAC9-225ENST00000490851 LARP1Q6PKG0 1096 aaKnown RBP12.73□□□□□ -0.37
HDAC9-225ENST00000490851 COL5A2P05997 1499 aaPredicted RBP12.73□□□□□ -0.37
HDAC9-225ENST00000490851 ZBTB40Q9NUA8 1239 aa12.73□□□□□ -0.37
HDAC9-225ENST00000490851 VIRMAQ69YN4 1812 aaKnown RBP12.73□□□□□ -0.37
HDAC9-225ENST00000490851 ABCC6O95255 1503 aa12.73□□□□□ -0.37
HDAC9-225ENST00000490851 F6X3S4 739 aa12.72□□□□□ -0.37
HDAC9-225ENST00000490851 PHKG2P15735 406 aa12.72□□□□□ -0.37
HDAC9-225ENST00000490851 HDGFL1Q5TGJ6 251 aa12.72□□□□□ -0.37
HDAC9-225ENST00000490851 SLC4A10Q6U841 1118 aa12.72□□□□□ -0.37
HDAC9-225ENST00000490851 NAP1L2Q9ULW6 460 aaPredicted RBP12.72□□□□□ -0.37
HDAC9-225ENST00000490851 EIF4A1P60842 406 aaKnown RBP12.72□□□□□ -0.37
HDAC9-225ENST00000490851 CCDC30Q5VVM6 783 aa12.72□□□□□ -0.37
HDAC9-225ENST00000490851 RWDD1Q9H446 243 aaPredicted RBP12.72□□□□□ -0.37
HDAC9-225ENST00000490851 CYP27B1O15528 508 aa12.71□□□□□ -0.37
HDAC9-225ENST00000490851 BABAM1Q9NWV8 329 aa12.71□□□□□ -0.37
HDAC9-225ENST00000490851 BTG4Q9NY30 223 aa12.71□□□□□ -0.37
HDAC9-225ENST00000490851 SLC39A6Q13433 755 aa12.71□□□□□ -0.38
HDAC9-225ENST00000490851 IFNL2Q8IZJ0 200 aa12.71□□□□□ -0.38
HDAC9-225ENST00000490851 RGS12O14924 1447 aa12.71□□□□□ -0.38
HDAC9-225ENST00000490851 ZBTB7BO15156 539 aaPredicted RBP12.7□□□□□ -0.38
HDAC9-225ENST00000490851 FKBP5Q13451 457 aaPredicted RBP12.7□□□□□ -0.38
HDAC9-225ENST00000490851 KDM6AO15550 1401 aaPredicted RBP12.7□□□□□ -0.38
HDAC9-225ENST00000490851 HMGB1P09429 215 aaKnown RBP12.7□□□□□ -0.38
HDAC9-225ENST00000490851 NFATC2IPQ8NCF5 419 aa12.7□□□□□ -0.38
HDAC9-225ENST00000490851 PTPRCP08575 1304 aa12.69□□□□□ -0.38
HDAC9-225ENST00000490851 KDM3BQ7LBC6 1761 aa12.69□□□□□ -0.38
HDAC9-225ENST00000490851 PRAMEF22A3QJZ6 481 aa12.69□□□□□ -0.38
HDAC9-225ENST00000490851 ADAMTS2O95450 1211 aa12.69□□□□□ -0.38
HDAC9-225ENST00000490851 ANXA1P04083 346 aa12.69□□□□□ -0.38
HDAC9-225ENST00000490851 FLIIQ13045 1269 aa12.69□□□□□ -0.38
HDAC9-225ENST00000490851 DDX54Q8TDD1 881 aaKnown RBP12.69□□□□□ -0.38
HDAC9-225ENST00000490851 NUTM2BA6NNL0 878 aaPredicted RBP12.68□□□□□ -0.38
HDAC9-225ENST00000490851 NUTM2EB1AL46 878 aaPredicted RBP12.68□□□□□ -0.38
HDAC9-225ENST00000490851 NUTM2AQ8IVF1 878 aaPredicted RBP12.68□□□□□ -0.38
HDAC9-225ENST00000490851 PHAXQ9H814 394 aaKnown RBP12.68□□□□□ -0.38
HDAC9-225ENST00000490851 SLC52A2Q9HAB3 445 aa12.68□□□□□ -0.38
HDAC9-225ENST00000490851 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.68□□□□□ -0.38
HDAC9-225ENST00000490851 CHPF2Q9P2E5 772 aa12.68□□□□□ -0.38
HDAC9-225ENST00000490851 PDZRN3Q9UPQ7 1066 aa12.68□□□□□ -0.38
HDAC9-225ENST00000490851 OVOS2A0A0G2JMS6 1433 aa12.68□□□□□ -0.38
HDAC9-225ENST00000490851 AHDC1Q5TGY3 1603 aaPredicted RBP12.68□□□□□ -0.38
HDAC9-225ENST00000490851 ZCRB1Q8TBF4 217 aaKnown RBP12.68□□□□□ -0.38
HDAC9-225ENST00000490851 CARD10Q9BWT7 1032 aa12.68□□□□□ -0.38
HDAC9-225ENST00000490851 IL2RBP14784 551 aa12.67□□□□□ -0.38
HDAC9-225ENST00000490851 INTS3Q68E01 1043 aaKnown RBP12.67□□□□□ -0.38
HDAC9-225ENST00000490851 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.67□□□□□ -0.38
HDAC9-225ENST00000490851 IPO4Q8TEX9 1081 aaKnown RBP12.67□□□□□ -0.38
HDAC9-225ENST00000490851 UBAP1LF5GYI3 381 aa12.67□□□□□ -0.38
HDAC9-225ENST00000490851 TOM1O60784 492 aa12.67□□□□□ -0.38
HDAC9-225ENST00000490851 PDE4AP27815 886 aa12.67□□□□□ -0.38
HDAC9-225ENST00000490851 DCAF5Q96JK2 942 aa12.67□□□□□ -0.38
HDAC9-225ENST00000490851 PHLPP1O60346 1717 aa12.67□□□□□ -0.38
HDAC9-225ENST00000490851 CHMP4BQ9H444 224 aaKnown RBP12.66□□□□□ -0.38
HDAC9-225ENST00000490851 PKD1L3Q7Z443 1732 aa12.66□□□□□ -0.38
HDAC9-225ENST00000490851 SCN11AQ9UI33 1791 aa12.66□□□□□ -0.38
HDAC9-225ENST00000490851 CABP4P57796 275 aa12.66□□□□□ -0.38
HDAC9-225ENST00000490851 HDAC1Q13547 482 aaPredicted RBP12.66□□□□□ -0.38
HDAC9-225ENST00000490851 MEIS3Q99687 375 aa12.66□□□□□ -0.38
HDAC9-225ENST00000490851 PCDH11XQ9BZA7 1347 aa12.65□□□□□ -0.38
HDAC9-225ENST00000490851 PCDH11YQ9BZA8 1340 aa12.65□□□□□ -0.38
HDAC9-225ENST00000490851 ZNF790Q6PG37 636 aa12.65□□□□□ -0.38
HDAC9-225ENST00000490851 PARP4Q9UKK3 1724 aaKnown RBP12.65□□□□□ -0.38
HDAC9-225ENST00000490851 SOS1Q07889 1333 aaPredicted RBP12.65□□□□□ -0.38
HDAC9-225ENST00000490851 SIPA1L3O60292 1781 aaPredicted RBP12.65□□□□□ -0.38
HDAC9-225ENST00000490851 GIGYF1O75420 1035 aaPredicted RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms