RNA–Protein interactions for RNA: ENST00000490475.1

TTC28-207, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 5

Gene TTC28, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-207ENST00000490475 ADRA2BP18089 450 aa14.06□□□□□ -0.16
TTC28-207ENST00000490475 MSL1Q68DK7 614 aa14.06□□□□□ -0.16
TTC28-207ENST00000490475 ZNF530Q6P9A1 599 aaPredicted RBP14.06□□□□□ -0.16
TTC28-207ENST00000490475 GNPATO15228 680 aa14.05□□□□□ -0.16
TTC28-207ENST00000490475 PHF14O94880 888 aa14.05□□□□□ -0.16
TTC28-207ENST00000490475 MTHFSP49914 203 aa14.05□□□□□ -0.16
TTC28-207ENST00000490475 CABP4P57796 275 aa14.05□□□□□ -0.16
TTC28-207ENST00000490475 RC3H1Q5TC82 1133 aaKnown RBP14.05□□□□□ -0.16
TTC28-207ENST00000490475 NLGN2Q8NFZ4 835 aa14.05□□□□□ -0.16
TTC28-207ENST00000490475 ATG3Q9NT62 314 aa14.05□□□□□ -0.16
TTC28-207ENST00000490475 RTCBQ9Y3I0 505 aaKnown RBP14.05□□□□□ -0.16
TTC28-207ENST00000490475 LINC00116Q8NCU8 138 aa14.04□□□□□ -0.16
TTC28-207ENST00000490475 KDRP35968 1356 aa14.04□□□□□ -0.16
TTC28-207ENST00000490475 TRAPPC3LQ5T215 181 aa14.03□□□□□ -0.16
TTC28-207ENST00000490475 NLGN1Q8N2Q7 840 aa14.03□□□□□ -0.16
TTC28-207ENST00000490475 CNTNAP4Q9C0A0 1308 aa14.02□□□□□ -0.17
TTC28-207ENST00000490475 AMER1Q5JTC6 1135 aaPredicted RBP14.02□□□□□ -0.17
TTC28-207ENST00000490475 SULT6B1Q6IMI4 303 aa14.02□□□□□ -0.17
TTC28-207ENST00000490475 RBM42Q9BTD8 480 aaKnown RBP14.02□□□□□ -0.17
TTC28-207ENST00000490475 IL13P35225 146 aa14.01□□□□□ -0.17
TTC28-207ENST00000490475 ITPK1Q13572 414 aa14.01□□□□□ -0.17
TTC28-207ENST00000490475 ZEB1P37275 1124 aaPredicted RBP14□□□□□ -0.17
TTC28-207ENST00000490475 AKAP4Q5JQC9 854 aa14□□□□□ -0.17
TTC28-207ENST00000490475 KDM6AO15550 1401 aaPredicted RBP13.99□□□□□ -0.17
TTC28-207ENST00000490475 NPC1L1Q9UHC9 1359 aa13.99□□□□□ -0.17
TTC28-207ENST00000490475 GOLGB1Q14789 3259 aaKnown RBP13.99□□□□□ -0.17
TTC28-207ENST00000490475 PER1O15534 1290 aaPredicted RBP13.99□□□□□ -0.17
TTC28-207ENST00000490475 GIGYF1O75420 1035 aaPredicted RBP13.99□□□□□ -0.17
TTC28-207ENST00000490475 RPS6KA4O75676 772 aa13.99□□□□□ -0.17
TTC28-207ENST00000490475 YBX3P16989 372 aaKnown RBP eCLIP13.99□□□□□ -0.17
TTC28-207ENST00000490475 RFC4P35249 363 aa13.99□□□□□ -0.17
TTC28-207ENST00000490475 SCN11AQ9UI33 1791 aa13.99□□□□□ -0.17
TTC28-207ENST00000490475 COL5A3P25940 1745 aaPredicted RBP13.98□□□□□ -0.17
TTC28-207ENST00000490475 C1QTNF8P60827 252 aa13.98□□□□□ -0.17
TTC28-207ENST00000490475 TGFB2P61812 414 aa13.98□□□□□ -0.17
TTC28-207ENST00000490475 AEBP1Q8IUX7 1158 aa13.98□□□□□ -0.17
TTC28-207ENST00000490475 NFATC2IPQ8NCF5 419 aa13.98□□□□□ -0.17
TTC28-207ENST00000490475 CICQ96RK0 1608 aaPredicted RBP13.97□□□□□ -0.17
TTC28-207ENST00000490475 DIAPH1O60610 1272 aaKnown RBP13.97□□□□□ -0.17
TTC28-207ENST00000490475 MMP10P09238 476 aa13.97□□□□□ -0.17
TTC28-207ENST00000490475 CNGB1Q14028 1251 aaPredicted RBP13.97□□□□□ -0.17
TTC28-207ENST00000490475 AMIGO3Q86WK7 504 aa13.97□□□□□ -0.17
TTC28-207ENST00000490475 ARHGEF1Q92888 912 aaKnown RBP13.96□□□□□ -0.17
TTC28-207ENST00000490475 CCDC87Q9NVE4 849 aa13.96□□□□□ -0.17
TTC28-207ENST00000490475 PARP3Q9Y6F1 533 aa13.96□□□□□ -0.17
TTC28-207ENST00000490475 KIF13BQ9NQT8 1826 aa13.96□□□□□ -0.17
TTC28-207ENST00000490475 PTCD1O75127 700 aaKnown RBP13.95□□□□□ -0.18
TTC28-207ENST00000490475 SLC4A9Q96Q91 983 aa13.95□□□□□ -0.18
TTC28-207ENST00000490475 SLC52A2Q9HAB3 445 aa13.95□□□□□ -0.18
TTC28-207ENST00000490475 CRKLP46109 303 aaKnown RBP13.94□□□□□ -0.18
TTC28-207ENST00000490475 CC2D1BQ5T0F9 858 aaKnown RBP13.94□□□□□ -0.18
TTC28-207ENST00000490475 MYH14Q7Z406 1995 aaKnown RBP13.94□□□□□ -0.18
TTC28-207ENST00000490475 GYS1P13807 737 aa13.93□□□□□ -0.18
TTC28-207ENST00000490475 MRC1P22897 1456 aa13.93□□□□□ -0.18
TTC28-207ENST00000490475 RNMTO43148 476 aaKnown RBP13.92□□□□□ -0.18
TTC28-207ENST00000490475 SMIM5Q71RC9 77 aa13.92□□□□□ -0.18
TTC28-207ENST00000490475 VSIG10Q8N0Z9 540 aa13.92□□□□□ -0.18
TTC28-207ENST00000490475 GPBP1L1Q9HC44 474 aaPredicted RBP13.92□□□□□ -0.18
TTC28-207ENST00000490475 C4AP0C0L4 1744 aa13.92□□□□□ -0.18
TTC28-207ENST00000490475 VIRMAQ69YN4 1812 aaKnown RBP13.92□□□□□ -0.18
TTC28-207ENST00000490475 C10orf71Q711Q0 1435 aa13.91□□□□□ -0.18
TTC28-207ENST00000490475 SENP3-EIF4A1A0A087X0R7 540 aa13.91□□□□□ -0.18
TTC28-207ENST00000490475 ZPR1O75312 459 aa13.91□□□□□ -0.18
TTC28-207ENST00000490475 HMOX1P09601 288 aa13.91□□□□□ -0.18
TTC28-207ENST00000490475 GAS2L2Q8NHY3 880 aa13.91□□□□□ -0.18
TTC28-207ENST00000490475 CFAP53Q96M91 514 aa13.91□□□□□ -0.18
TTC28-207ENST00000490475 USP42Q9H9J4 1324 aaKnown RBP13.9□□□□□ -0.18
TTC28-207ENST00000490475 ATP10DQ9P241 1426 aa13.9□□□□□ -0.18
TTC28-207ENST00000490475 ADCY9O60503 1353 aa13.9□□□□□ -0.18
TTC28-207ENST00000490475 PXDNLA1KZ92 1463 aa13.9□□□□□ -0.18
TTC28-207ENST00000490475 TJP1Q07157 1748 aa13.9□□□□□ -0.18
TTC28-207ENST00000490475 ADAMTS7Q9UKP4 1686 aa13.89□□□□□ -0.19
TTC28-207ENST00000490475 MTHFSDQ2M296 383 aaKnown RBP13.89□□□□□ -0.19
TTC28-207ENST00000490475 TTC5Q8N0Z6 440 aa13.89□□□□□ -0.19
TTC28-207ENST00000490475 TEX13AQ9BXU3 409 aaPredicted RBP13.89□□□□□ -0.19
TTC28-207ENST00000490475 NUDCQ9Y266 331 aa13.89□□□□□ -0.19
TTC28-207ENST00000490475 STARD3NLO95772 234 aa13.88□□□□□ -0.19
TTC28-207ENST00000490475 TEFQ10587 303 aa13.88□□□□□ -0.19
TTC28-207ENST00000490475 DDX10Q13206 875 aaKnown RBP13.88□□□□□ -0.19
TTC28-207ENST00000490475 LGR6Q9HBX8 967 aa13.88□□□□□ -0.19
TTC28-207ENST00000490475 GNAT3A8MTJ3 354 aa13.87□□□□□ -0.19
TTC28-207ENST00000490475 U2SURPO15042 1029 aaKnown RBP13.87□□□□□ -0.19
TTC28-207ENST00000490475 INTS5Q6P9B9 1019 aaKnown RBP13.87□□□□□ -0.19
TTC28-207ENST00000490475 PIM2Q9P1W9 311 aa13.87□□□□□ -0.19
TTC28-207ENST00000490475 BCS1LQ9Y276 419 aa13.87□□□□□ -0.19
TTC28-207ENST00000490475 N4BP2Q86UW6 1770 aaPredicted RBP13.86□□□□□ -0.19
TTC28-207ENST00000490475 A0A087WZG4 1122 aa13.86□□□□□ -0.19
TTC28-207ENST00000490475 A0A0G2JLW4 131 aa13.86□□□□□ -0.19
TTC28-207ENST00000490475 CYP19A1P11511 503 aaPredicted RBP13.86□□□□□ -0.19
TTC28-207ENST00000490475 DNAJC10Q8IXB1 793 aa13.86□□□□□ -0.19
TTC28-207ENST00000490475 SOS1Q07889 1333 aaPredicted RBP13.86□□□□□ -0.19
TTC28-207ENST00000490475 ARFGEF1Q9Y6D6 1849 aa13.85□□□□□ -0.19
TTC28-207ENST00000490475 BRCA1P38398 1863 aaKnown RBP13.85□□□□□ -0.19
TTC28-207ENST00000490475 KIAA1551Q9HCM1 1747 aa13.85□□□□□ -0.19
TTC28-207ENST00000490475 FCHSD2O94868 740 aa13.85□□□□□ -0.19
TTC28-207ENST00000490475 DPEP1P16444 411 aa13.85□□□□□ -0.19
TTC28-207ENST00000490475 FKBP8Q14318 412 aa13.85□□□□□ -0.19
TTC28-207ENST00000490475 NPM2Q86SE8 214 aaKnown RBP13.85□□□□□ -0.19
TTC28-207ENST00000490475 NARFQ9UHQ1 456 aa13.85□□□□□ -0.19
TTC28-207ENST00000490475 UBR2Q8IWV8 1755 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms