RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 NBPF11Q86T75 865 aa8.43□□□□□ -1.06
SYNE1-228ENST00000490135 WDR66Q8TBY9 1149 aa8.43□□□□□ -1.06
SYNE1-228ENST00000490135 STK38Q15208 465 aa8.43□□□□□ -1.06
SYNE1-228ENST00000490135 CFAP45Q9UL16 551 aa8.43□□□□□ -1.06
SYNE1-228ENST00000490135 ZWINTO95229 277 aa8.43□□□□□ -1.06
SYNE1-228ENST00000490135 NBPF20Q3BBV1 942 aa8.43□□□□□ -1.06
SYNE1-228ENST00000490135 SWAP70Q9UH65 585 aa8.43□□□□□ -1.06
SYNE1-228ENST00000490135 SLU7O95391 586 aaKnown RBP8.43□□□□□ -1.06
SYNE1-228ENST00000490135 FERP16591 822 aa8.43□□□□□ -1.06
SYNE1-228ENST00000490135 SLC20A2Q08357 652 aa8.43□□□□□ -1.06
SYNE1-228ENST00000490135 DZIP1Q86YF9 867 aaKnown RBP8.43□□□□□ -1.06
SYNE1-228ENST00000490135 SCLT1Q96NL6 688 aa8.43□□□□□ -1.06
SYNE1-228ENST00000490135 PUS7Q96PZ0 661 aaKnown RBP8.43□□□□□ -1.06
SYNE1-228ENST00000490135 FSD1Q9BTV5 496 aa8.43□□□□□ -1.06
SYNE1-228ENST00000490135 CCDC57Q2TAC2 916 aa8.43□□□□□ -1.06
SYNE1-228ENST00000490135 C17orf53Q8N3J3 647 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-228ENST00000490135 TTC36A6NLP5 189 aa8.42□□□□□ -1.06
SYNE1-228ENST00000490135 CCDC183Q5T5S1 534 aa8.42□□□□□ -1.06
SYNE1-228ENST00000490135 RAPGEF4Q8WZA2 1011 aa8.42□□□□□ -1.06
SYNE1-228ENST00000490135 CNTROBQ8N137 903 aa8.42□□□□□ -1.06
SYNE1-228ENST00000490135 PSME1Q06323 249 aa8.42□□□□□ -1.06
SYNE1-228ENST00000490135 FAM43BQ6ZT52 329 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-228ENST00000490135 FEZ2Q9UHY8 353 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-228ENST00000490135 CBFA2T2O43439 604 aa8.42□□□□□ -1.06
SYNE1-228ENST00000490135 ZNF76P36508 570 aa8.42□□□□□ -1.06
SYNE1-228ENST00000490135 PPP4R3AQ6IN85 833 aa8.42□□□□□ -1.06
SYNE1-228ENST00000490135 GBP3Q9H0R5 595 aa8.42□□□□□ -1.06
SYNE1-228ENST00000490135 GOPCQ9HD26 462 aa8.42□□□□□ -1.06
SYNE1-228ENST00000490135 SSX2IPQ9Y2D8 614 aa8.42□□□□□ -1.06
SYNE1-228ENST00000490135 POTEDQ86YR6 584 aa8.41□□□□□ -1.06
SYNE1-228ENST00000490135 RNF168Q8IYW5 571 aaPredicted RBP8.41□□□□□ -1.06
SYNE1-228ENST00000490135 DONSONQ9NYP3 566 aa8.41□□□□□ -1.06
SYNE1-228ENST00000490135 RAB3GAP1Q15042 981 aa8.41□□□□□ -1.06
SYNE1-228ENST00000490135 KIF6Q6ZMV9 814 aa8.41□□□□□ -1.06
SYNE1-228ENST00000490135 VEZTQ9HBM0 779 aa8.41□□□□□ -1.06
SYNE1-228ENST00000490135 MYO1CO00159 1063 aa8.41□□□□□ -1.06
SYNE1-228ENST00000490135 RBM5P52756 815 aaKnown RBP eCLIP8.41□□□□□ -1.06
SYNE1-228ENST00000490135 TRIM22Q8IYM9 498 aa8.41□□□□□ -1.06
SYNE1-228ENST00000490135 TRMT1Q9NXH9 659 aaKnown RBP8.41□□□□□ -1.06
SYNE1-228ENST00000490135 CLIP2Q9UDT6 1046 aa8.41□□□□□ -1.06
SYNE1-228ENST00000490135 SSBP05455 408 aaKnown RBP eCLIP8.41□□□□□ -1.06
SYNE1-228ENST00000490135 LUZP1Q86V48 1076 aa8.41□□□□□ -1.06
SYNE1-228ENST00000490135 PANK1Q8TE04 598 aa8.41□□□□□ -1.06
SYNE1-228ENST00000490135 ERO1AQ96HE7 468 aa8.41□□□□□ -1.06
SYNE1-228ENST00000490135 KCNG1Q9UIX4 513 aa8.41□□□□□ -1.06
SYNE1-228ENST00000490135 RLBP1P12271 317 aa8.4□□□□□ -1.06
SYNE1-228ENST00000490135 PDCP20941 246 aa8.4□□□□□ -1.06
SYNE1-228ENST00000490135 OAS2P29728 719 aaKnown RBP8.4□□□□□ -1.06
SYNE1-228ENST00000490135 IRX1P78414 480 aaPredicted RBP8.4□□□□□ -1.06
SYNE1-228ENST00000490135 AIMP1Q12904 312 aaKnown RBP8.4□□□□□ -1.06
SYNE1-228ENST00000490135 EFCAB2Q5VUJ9 269 aa8.4□□□□□ -1.06
SYNE1-228ENST00000490135 HOOK3Q86VS8 718 aa8.4□□□□□ -1.06
SYNE1-228ENST00000490135 CCDC113Q9H0I3 377 aa8.4□□□□□ -1.06
SYNE1-228ENST00000490135 PPP1R12BO60237 982 aaPredicted RBP8.4□□□□□ -1.06
SYNE1-228ENST00000490135 ERCC3P19447 782 aa8.4□□□□□ -1.06
SYNE1-228ENST00000490135 HDAC1Q13547 482 aaPredicted RBP8.4□□□□□ -1.06
SYNE1-228ENST00000490135 SMC1AQ14683 1233 aaKnown RBP8.4□□□□□ -1.06
SYNE1-228ENST00000490135 EIF4G1Q04637 1599 aaKnown RBP8.4□□□□□ -1.06
SYNE1-228ENST00000490135 BRD4O60885 1362 aaPredicted RBP8.4□□□□□ -1.06
SYNE1-228ENST00000490135 GIGYF2Q6Y7W6 1299 aaKnown RBP8.4□□□□□ -1.06
SYNE1-228ENST00000490135 CEP112Q8N8E3 955 aa8.4□□□□□ -1.06
SYNE1-228ENST00000490135 SMARCC1Q92922 1105 aaPredicted RBP8.4□□□□□ -1.06
SYNE1-228ENST00000490135 SH3GL3Q99963 347 aa8.4□□□□□ -1.06
SYNE1-228ENST00000490135 KIF27Q86VH2 1401 aa8.4□□□□□ -1.06
SYNE1-228ENST00000490135 FRMD3A2A2Y4 597 aa8.4□□□□□ -1.07
SYNE1-228ENST00000490135 HIP1O00291 1037 aa8.4□□□□□ -1.07
SYNE1-228ENST00000490135 KIF4AO95239 1232 aa8.4□□□□□ -1.07
SYNE1-228ENST00000490135 SEMA3FQ13275 785 aa8.4□□□□□ -1.07
SYNE1-228ENST00000490135 SNW1Q13573 536 aaKnown RBP8.4□□□□□ -1.07
SYNE1-228ENST00000490135 ZKSCAN8Q15776 578 aaPredicted RBP8.4□□□□□ -1.07
SYNE1-228ENST00000490135 NBPF9Q3BBW0 867 aa8.4□□□□□ -1.07
SYNE1-228ENST00000490135 SEPT14Q6ZU15 432 aa8.4□□□□□ -1.07
SYNE1-228ENST00000490135 DZIP1LQ8IYY4 767 aaKnown RBP8.4□□□□□ -1.07
SYNE1-228ENST00000490135 NBPF3Q9H094 633 aa8.4□□□□□ -1.07
SYNE1-228ENST00000490135 NUP155O75694 1391 aa8.4□□□□□ -1.07
SYNE1-228ENST00000490135 PLEKHH1Q9ULM0 1364 aa8.4□□□□□ -1.07
SYNE1-228ENST00000490135 CDC45O75419 566 aa8.4□□□□□ -1.07
SYNE1-228ENST00000490135 ELF2Q15723 593 aa8.4□□□□□ -1.07
SYNE1-228ENST00000490135 FAM177A1Q8N128 213 aaPredicted RBP8.4□□□□□ -1.07
SYNE1-228ENST00000490135 POTEB2H3BUK9 544 aa8.39□□□□□ -1.07
SYNE1-228ENST00000490135 URI1O94763 535 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-228ENST00000490135 PEX19P40855 299 aa8.39□□□□□ -1.07
SYNE1-228ENST00000490135 TTC39AQ5SRH9 613 aa8.39□□□□□ -1.07
SYNE1-228ENST00000490135 NACAP1Q9BZK3 213 aa8.39□□□□□ -1.07
SYNE1-228ENST00000490135 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.39□□□□□ -1.07
SYNE1-228ENST00000490135 MKRN1Q9UHC7 482 aaKnown RBP8.39□□□□□ -1.07
SYNE1-228ENST00000490135 TSPYL4Q9UJ04 414 aa8.39□□□□□ -1.07
SYNE1-228ENST00000490135 TRAK1Q9UPV9 953 aa8.39□□□□□ -1.07
SYNE1-228ENST00000490135 GSTTP1A0A1W2PQM5 241 aa8.39□□□□□ -1.07
SYNE1-228ENST00000490135 GOLGA6L9A6NEM1 432 aa8.39□□□□□ -1.07
SYNE1-228ENST00000490135 GCOM1H8Y6P7 765 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-228ENST00000490135 NEMFO60524 1076 aa8.39□□□□□ -1.07
SYNE1-228ENST00000490135 MYZAPP0CAP1 466 aa8.39□□□□□ -1.07
SYNE1-228ENST00000490135 UBE4AQ14139 1066 aa8.39□□□□□ -1.07
SYNE1-228ENST00000490135 TNIP1Q15025 636 aa8.39□□□□□ -1.07
SYNE1-228ENST00000490135 CCDC69A6NI79 296 aa8.39□□□□□ -1.07
SYNE1-228ENST00000490135 PPP1R12AO14974 1030 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-228ENST00000490135 GUCY2CP25092 1073 aa8.39□□□□□ -1.07
SYNE1-228ENST00000490135 EBAG9O00559 213 aa8.39□□□□□ -1.07
SYNE1-228ENST00000490135 UBTFL1P0CB47 393 aaPredicted RBP8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms