RNA–Protein interactions for RNA: ENST00000489406.1

UFD1-209, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 2

Gene UFD1, Length 994 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-209ENST00000489406 RAPGEF4Q8WZA2 1011 aa21.67■■□□□ 1.06
UFD1-209ENST00000489406 RAB3GAP2Q9H2M9 1393 aa21.66■■□□□ 1.06
UFD1-209ENST00000489406 CGNL1Q0VF96 1302 aa21.66■■□□□ 1.06
UFD1-209ENST00000489406 HOXC9P31274 260 aa21.66■■□□□ 1.06
UFD1-209ENST00000489406 ITPK1Q13572 414 aa21.66■■□□□ 1.06
UFD1-209ENST00000489406 PIGBQ92521 554 aa21.66■■□□□ 1.06
UFD1-209ENST00000489406 PARP3Q9Y6F1 533 aa21.66■■□□□ 1.06
UFD1-209ENST00000489406 PCDH11XQ9BZA7 1347 aa21.65■■□□□ 1.06
UFD1-209ENST00000489406 PCDH11YQ9BZA8 1340 aa21.65■■□□□ 1.06
UFD1-209ENST00000489406 CCDC85CA6NKD9 419 aa21.65■■□□□ 1.06
UFD1-209ENST00000489406 NBPF6Q5VWK0 638 aa21.65■■□□□ 1.06
UFD1-209ENST00000489406 NBPF4Q96M43 638 aa21.65■■□□□ 1.06
UFD1-209ENST00000489406 C4AP0C0L4 1744 aa21.64■■□□□ 1.06
UFD1-209ENST00000489406 ZC3H4Q9UPT8 1303 aaKnown RBP21.64■■□□□ 1.05
UFD1-209ENST00000489406 TATP17735 454 aaPredicted RBP21.64■■□□□ 1.05
UFD1-209ENST00000489406 AMPHP49418 695 aa21.64■■□□□ 1.05
UFD1-209ENST00000489406 RGS19P49795 217 aa21.64■■□□□ 1.05
UFD1-209ENST00000489406 RASSF7Q02833 373 aa21.64■■□□□ 1.05
UFD1-209ENST00000489406 TRAPPC3LQ5T215 181 aa21.64■■□□□ 1.05
UFD1-209ENST00000489406 MAP3K19Q56UN5 1328 aa21.63■■□□□ 1.05
UFD1-209ENST00000489406 CNTNAP1P78357 1384 aa21.62■■□□□ 1.05
UFD1-209ENST00000489406 MAP2P11137 1827 aaKnown RBP21.62■■□□□ 1.05
UFD1-209ENST00000489406 ITGB4P16144 1822 aa21.62■■□□□ 1.05
UFD1-209ENST00000489406 FBLN1P23142 703 aa21.62■■□□□ 1.05
UFD1-209ENST00000489406 ATP6V1AP38606 617 aa21.62■■□□□ 1.05
UFD1-209ENST00000489406 CD163L1Q9NR16 1453 aa21.62■■□□□ 1.05
UFD1-209ENST00000489406 POTECB2RU33 542 aa21.61■■□□□ 1.05
UFD1-209ENST00000489406 CYP27B1O15528 508 aa21.61■■□□□ 1.05
UFD1-209ENST00000489406 CHRNA5P30532 468 aa21.61■■□□□ 1.05
UFD1-209ENST00000489406 GYS1P13807 737 aa21.6■■□□□ 1.05
UFD1-209ENST00000489406 TMC1Q8TDI8 760 aa21.6■■□□□ 1.05
UFD1-209ENST00000489406 WBP1LQ9NX94 342 aa21.6■■□□□ 1.05
UFD1-209ENST00000489406 RTCBQ9Y3I0 505 aaKnown RBP21.6■■□□□ 1.05
UFD1-209ENST00000489406 HDGFL2Q7Z4V5 671 aaPredicted RBP21.59■■□□□ 1.05
UFD1-209ENST00000489406 ARHGEF1Q92888 912 aaKnown RBP21.59■■□□□ 1.05
UFD1-209ENST00000489406 LMNB1P20700 586 aa21.58■■□□□ 1.05
UFD1-209ENST00000489406 VEGFBP49765 207 aa21.58■■□□□ 1.05
UFD1-209ENST00000489406 KDM6AO15550 1401 aaPredicted RBP21.57■■□□□ 1.04
UFD1-209ENST00000489406 EDC4Q6P2E9 1401 aaKnown RBP21.57■■□□□ 1.04
UFD1-209ENST00000489406 HSPA8P11142 646 aaKnown RBP21.57■■□□□ 1.04
UFD1-209ENST00000489406 CHADLQ6NUI6 762 aa21.57■■□□□ 1.04
UFD1-209ENST00000489406 ASAP1Q9ULH1 1129 aa21.56■■□□□ 1.04
UFD1-209ENST00000489406 RFC4P35249 363 aa21.55■■□□□ 1.04
UFD1-209ENST00000489406 SLC12A5Q9H2X9 1139 aa21.55■■□□□ 1.04
UFD1-209ENST00000489406 POTEIP0CG38 1075 aa21.52■■□□□ 1.04
UFD1-209ENST00000489406 POTEJP0CG39 1038 aa21.52■■□□□ 1.04
UFD1-209ENST00000489406 TMOD3Q9NYL9 352 aa21.52■■□□□ 1.04
UFD1-209ENST00000489406 ADRA2BP18089 450 aa21.51■■□□□ 1.03
UFD1-209ENST00000489406 DPY19L2Q6NUT2 758 aa21.51■■□□□ 1.03
UFD1-209ENST00000489406 COG3Q96JB2 828 aa21.51■■□□□ 1.03
UFD1-209ENST00000489406 CFAP44Q96MT7 982 aa21.51■■□□□ 1.03
UFD1-209ENST00000489406 TIAM2Q8IVF5 1701 aa21.49■■□□□ 1.03
UFD1-209ENST00000489406 DDR1Q08345 913 aa21.49■■□□□ 1.03
UFD1-209ENST00000489406 TERF2IPQ9NYB0 399 aa21.49■■□□□ 1.03
UFD1-209ENST00000489406 A0A1W2PP64 1363 aa21.48■■□□□ 1.03
UFD1-209ENST00000489406 SMG6Q86US8 1419 aaKnown RBP21.48■■□□□ 1.03
UFD1-209ENST00000489406 RRS1Q15050 365 aaKnown RBP21.48■■□□□ 1.03
UFD1-209ENST00000489406 NKX1-1Q15270 411 aaPredicted RBP21.48■■□□□ 1.03
UFD1-209ENST00000489406 ATG3Q9NT62 314 aa21.48■■□□□ 1.03
UFD1-209ENST00000489406 VIRMAQ69YN4 1812 aaKnown RBP21.47■■□□□ 1.03
UFD1-209ENST00000489406 RTL1A6NKG5 1358 aa21.47■■□□□ 1.03
UFD1-209ENST00000489406 TMEM88BA6NKF7 163 aa21.46■■□□□ 1.03
UFD1-209ENST00000489406 RPS6KA4O75676 772 aa21.46■■□□□ 1.03
UFD1-209ENST00000489406 FKBP8Q14318 412 aa21.46■■□□□ 1.03
UFD1-209ENST00000489406 PASKQ96RG2 1323 aa21.46■■□□□ 1.03
UFD1-209ENST00000489406 RC3H1Q5TC82 1133 aaKnown RBP21.45■■□□□ 1.02
UFD1-209ENST00000489406 SLC4A9Q96Q91 983 aa21.45■■□□□ 1.02
UFD1-209ENST00000489406 SRP68Q9UHB9 627 aaKnown RBP21.45■■□□□ 1.02
UFD1-209ENST00000489406 CCDC88AQ3V6T2 1871 aa21.45■■□□□ 1.02
UFD1-209ENST00000489406 TNRC18O15417 2968 aaPredicted RBP21.44■■□□□ 1.02
UFD1-209ENST00000489406 NFKBIEO00221 500 aa21.43■■□□□ 1.02
UFD1-209ENST00000489406 RBM42Q9BTD8 480 aaKnown RBP21.43■■□□□ 1.02
UFD1-209ENST00000489406 KDRP35968 1356 aa21.42■■□□□ 1.02
UFD1-209ENST00000489406 MAP2K1Q02750 393 aaPredicted RBP21.42■■□□□ 1.02
UFD1-209ENST00000489406 HSP90AB2PQ58FF8 381 aa21.42■■□□□ 1.02
UFD1-209ENST00000489406 PDE4DIPQ5VU43 2346 aa21.41■■□□□ 1.02
UFD1-209ENST00000489406 CNTNAP4Q9C0A0 1308 aa21.41■■□□□ 1.02
UFD1-209ENST00000489406 ROCK2O75116 1388 aaKnown RBP21.4■■□□□ 1.02
UFD1-209ENST00000489406 DEFB115Q30KQ5 88 aa21.4■■□□□ 1.02
UFD1-209ENST00000489406 SPG7Q9UQ90 795 aa21.4■■□□□ 1.02
UFD1-209ENST00000489406 POLRMTO00411 1230 aaKnown RBP21.39■■□□□ 1.01
UFD1-209ENST00000489406 ERFEQ4G0M1 354 aa21.39■■□□□ 1.01
UFD1-209ENST00000489406 TTLL6Q8N841 843 aa21.39■■□□□ 1.01
UFD1-209ENST00000489406 WDR33Q9C0J8 1336 aaKnown RBP21.38■■□□□ 1.01
UFD1-209ENST00000489406 DDNO94850 711 aaPredicted RBP21.38■■□□□ 1.01
UFD1-209ENST00000489406 USP42Q9H9J4 1324 aaKnown RBP21.37■■□□□ 1.01
UFD1-209ENST00000489406 RASSF10A6NK89 507 aa21.37■■□□□ 1.01
UFD1-209ENST00000489406 ITGBL1O95965 494 aaPredicted RBP21.37■■□□□ 1.01
UFD1-209ENST00000489406 LDHDQ86WU2 507 aa21.37■■□□□ 1.01
UFD1-209ENST00000489406 INSRP06213 1382 aa21.36■■□□□ 1.01
UFD1-209ENST00000489406 TM4SF1P30408 202 aa21.36■■□□□ 1.01
UFD1-209ENST00000489406 L3MBTL2Q969R5 705 aa21.35■■□□□ 1.01
UFD1-209ENST00000489406 COL5A3P25940 1745 aaPredicted RBP21.35■■□□□ 1.01
UFD1-209ENST00000489406 MYH14Q7Z406 1995 aaKnown RBP21.34■■□□□ 1.01
UFD1-209ENST00000489406 MCOLN1Q9GZU1 580 aa21.34■■□□□ 1.01
UFD1-209ENST00000489406 BEGAINQ9BUH8 593 aa21.33■■□□□ 1.01
UFD1-209ENST00000489406 PHKG2P15735 406 aa21.32■■□□□ 1
UFD1-209ENST00000489406 IFNL2Q8IZJ0 200 aa21.32■■□□□ 1
UFD1-209ENST00000489406 TSKSQ9UJT2 592 aa21.32■■□□□ 1
UFD1-209ENST00000489406 ZNF831Q5JPB2 1677 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms