RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 ZNF831Q5JPB2 1677 aa31.18■■■□□ 2.58
COL9A3-213ENST00000489045 VIRMAQ69YN4 1812 aaKnown RBP31.17■■■□□ 2.58
COL9A3-213ENST00000489045 LINC00116Q8NCU8 138 aa31.17■■■□□ 2.58
COL9A3-213ENST00000489045 FLAD1Q8NFF5 587 aa31.17■■■□□ 2.58
COL9A3-213ENST00000489045 ATP6V1AP38606 617 aa31.15■■■□□ 2.58
COL9A3-213ENST00000489045 ITPK1Q13572 414 aa31.15■■■□□ 2.58
COL9A3-213ENST00000489045 MSL1Q68DK7 614 aa31.15■■■□□ 2.58
COL9A3-213ENST00000489045 AMIGO3Q86WK7 504 aa31.15■■■□□ 2.58
COL9A3-213ENST00000489045 KLHL34Q8N239 644 aa31.15■■■□□ 2.58
COL9A3-213ENST00000489045 COL3A1P02461 1466 aaPredicted RBP31.14■■■□□ 2.58
COL9A3-213ENST00000489045 DIAPH1O60610 1272 aaKnown RBP31.14■■■□□ 2.58
COL9A3-213ENST00000489045 HMOX1P09601 288 aa31.14■■■□□ 2.58
COL9A3-213ENST00000489045 COL5A3P25940 1745 aaPredicted RBP31.14■■■□□ 2.58
COL9A3-213ENST00000489045 CABP4P57796 275 aa31.13■■■□□ 2.57
COL9A3-213ENST00000489045 PHF14O94880 888 aa31.12■■■□□ 2.57
COL9A3-213ENST00000489045 SMIM5Q71RC9 77 aa31.11■■■□□ 2.57
COL9A3-213ENST00000489045 YY1P25490 414 aa31.1■■■□□ 2.57
COL9A3-213ENST00000489045 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP31.09■■■□□ 2.57
COL9A3-213ENST00000489045 RBM42Q9BTD8 480 aaKnown RBP31.09■■■□□ 2.57
COL9A3-213ENST00000489045 SSFA2P28290 1259 aa31.08■■■□□ 2.57
COL9A3-213ENST00000489045 SLC4A9Q96Q91 983 aa31.08■■■□□ 2.57
COL9A3-213ENST00000489045 GNPATO15228 680 aa31.07■■■□□ 2.56
COL9A3-213ENST00000489045 AKAP4Q5JQC9 854 aa31.07■■■□□ 2.56
COL9A3-213ENST00000489045 NFATC2IPQ8NCF5 419 aa31.06■■■□□ 2.56
COL9A3-213ENST00000489045 CHD4Q14839 1912 aa31.04■■■□□ 2.56
COL9A3-213ENST00000489045 ADAMTS7Q9UKP4 1686 aa31.04■■■□□ 2.56
COL9A3-213ENST00000489045 NLGN2Q8NFZ4 835 aa31.03■■■□□ 2.56
COL9A3-213ENST00000489045 TJP1Q07157 1748 aa31.03■■■□□ 2.56
COL9A3-213ENST00000489045 CICQ96RK0 1608 aaPredicted RBP31.02■■■□□ 2.56
COL9A3-213ENST00000489045 MRC1P22897 1456 aa31.02■■■□□ 2.56
COL9A3-213ENST00000489045 MYH14Q7Z406 1995 aaKnown RBP31.02■■■□□ 2.56
COL9A3-213ENST00000489045 U2SURPO15042 1029 aaKnown RBP31.01■■■□□ 2.55
COL9A3-213ENST00000489045 MTHFSDQ2M296 383 aaKnown RBP31.01■■■□□ 2.55
COL9A3-213ENST00000489045 UTRNP46939 3433 aa31.01■■■□□ 2.55
COL9A3-213ENST00000489045 PTCD1O75127 700 aaKnown RBP31■■■□□ 2.55
COL9A3-213ENST00000489045 LGR6Q9HBX8 967 aa31■■■□□ 2.55
COL9A3-213ENST00000489045 RNMTO43148 476 aaKnown RBP30.98■■■□□ 2.55
COL9A3-213ENST00000489045 SLC52A2Q9HAB3 445 aa30.98■■■□□ 2.55
COL9A3-213ENST00000489045 CNTNAP4Q9C0A0 1308 aa30.98■■■□□ 2.55
COL9A3-213ENST00000489045 GPR162Q16538 588 aa30.97■■■□□ 2.55
COL9A3-213ENST00000489045 RTCBQ9Y3I0 505 aaKnown RBP30.97■■■□□ 2.55
COL9A3-213ENST00000489045 C4AP0C0L4 1744 aa30.97■■■□□ 2.55
COL9A3-213ENST00000489045 RC3H1Q5TC82 1133 aaKnown RBP30.96■■■□□ 2.55
COL9A3-213ENST00000489045 CFAP53Q96M91 514 aa30.95■■■□□ 2.55
COL9A3-213ENST00000489045 PELP1Q8IZL8 1130 aaKnown RBP30.94■■■□□ 2.54
COL9A3-213ENST00000489045 TRAPPC3LQ5T215 181 aa30.93■■■□□ 2.54
COL9A3-213ENST00000489045 PPP2R1AP30153 589 aa30.92■■■□□ 2.54
COL9A3-213ENST00000489045 CD2APQ9Y5K6 639 aa30.92■■■□□ 2.54
COL9A3-213ENST00000489045 UBR2Q8IWV8 1755 aa30.9■■■□□ 2.54
COL9A3-213ENST00000489045 KCPQ6ZWJ8 1503 aa30.9■■■□□ 2.54
COL9A3-213ENST00000489045 RPS6KA4O75676 772 aa30.9■■■□□ 2.54
COL9A3-213ENST00000489045 ADRA2BP18089 450 aa30.9■■■□□ 2.54
COL9A3-213ENST00000489045 GOLGB1Q14789 3259 aaKnown RBP30.89■■■□□ 2.54
COL9A3-213ENST00000489045 CRKLP46109 303 aaKnown RBP30.89■■■□□ 2.54
COL9A3-213ENST00000489045 ARHGEF1Q92888 912 aaKnown RBP30.89■■■□□ 2.54
COL9A3-213ENST00000489045 SIPA1L3O60292 1781 aaPredicted RBP30.89■■■□□ 2.54
COL9A3-213ENST00000489045 SLC39A6Q13433 755 aa30.88■■■□□ 2.53
COL9A3-213ENST00000489045 GAS2L2Q8NHY3 880 aa30.87■■■□□ 2.53
COL9A3-213ENST00000489045 RSPH6AQ9H0K4 717 aa30.85■■■□□ 2.53
COL9A3-213ENST00000489045 NUDCQ9Y266 331 aa30.85■■■□□ 2.53
COL9A3-213ENST00000489045 KIF13BQ9NQT8 1826 aa30.84■■■□□ 2.53
COL9A3-213ENST00000489045 GNAT3A8MTJ3 354 aa30.84■■■□□ 2.53
COL9A3-213ENST00000489045 MMP10P09238 476 aa30.84■■■□□ 2.53
COL9A3-213ENST00000489045 YBX3P16989 372 aaKnown RBP eCLIP30.84■■■□□ 2.53
COL9A3-213ENST00000489045 PRKAR2BP31323 418 aa30.84■■■□□ 2.53
COL9A3-213ENST00000489045 RFC4P35249 363 aa30.84■■■□□ 2.53
COL9A3-213ENST00000489045 DNAJC10Q8IXB1 793 aa30.84■■■□□ 2.53
COL9A3-213ENST00000489045 GYS1P13807 737 aa30.82■■■□□ 2.52
COL9A3-213ENST00000489045 NLGN1Q8N2Q7 840 aa30.82■■■□□ 2.52
COL9A3-213ENST00000489045 PHACTR3Q96KR7 559 aa30.82■■■□□ 2.52
COL9A3-213ENST00000489045 U2AF1L5P0DN76 240 aaPredicted RBP30.8■■■□□ 2.52
COL9A3-213ENST00000489045 U2AF1Q01081 240 aaKnown RBP eCLIP30.8■■■□□ 2.52
COL9A3-213ENST00000489045 INTS5Q6P9B9 1019 aaKnown RBP30.8■■■□□ 2.52
COL9A3-213ENST00000489045 IL17REQ8NFR9 667 aa30.8■■■□□ 2.52
COL9A3-213ENST00000489045 TEFQ10587 303 aa30.79■■■□□ 2.52
COL9A3-213ENST00000489045 CCDC87Q9NVE4 849 aa30.79■■■□□ 2.52
COL9A3-213ENST00000489045 KIAA1551Q9HCM1 1747 aa30.78■■■□□ 2.52
COL9A3-213ENST00000489045 GRIN3BO60391 1043 aa30.78■■■□□ 2.52
COL9A3-213ENST00000489045 CYP19A1P11511 503 aaPredicted RBP30.77■■■□□ 2.52
COL9A3-213ENST00000489045 ZNF784Q8NCA9 323 aaPredicted RBP30.77■■■□□ 2.52
COL9A3-213ENST00000489045 SRP68Q9UHB9 627 aaKnown RBP30.77■■■□□ 2.52
COL9A3-213ENST00000489045 N4BP2Q86UW6 1770 aaPredicted RBP30.77■■■□□ 2.52
COL9A3-213ENST00000489045 TTC5Q8N0Z6 440 aa30.76■■■□□ 2.51
COL9A3-213ENST00000489045 USP42Q9H9J4 1324 aaKnown RBP30.75■■■□□ 2.51
COL9A3-213ENST00000489045 VSIG10Q8N0Z9 540 aa30.75■■■□□ 2.51
COL9A3-213ENST00000489045 CEMIPQ8WUJ3 1361 aa30.75■■■□□ 2.51
COL9A3-213ENST00000489045 C10orf71Q711Q0 1435 aa30.74■■■□□ 2.51
COL9A3-213ENST00000489045 SOS1Q07889 1333 aaPredicted RBP30.73■■■□□ 2.51
COL9A3-213ENST00000489045 FCHSD2O94868 740 aa30.73■■■□□ 2.51
COL9A3-213ENST00000489045 PXDNLA1KZ92 1463 aa30.72■■■□□ 2.51
COL9A3-213ENST00000489045 WWC3Q9ULE0 1092 aa30.72■■■□□ 2.51
COL9A3-213ENST00000489045 ZNF790Q6PG37 636 aa30.71■■■□□ 2.51
COL9A3-213ENST00000489045 ZBTB1Q9Y2K1 713 aa30.71■■■□□ 2.51
COL9A3-213ENST00000489045 PARP3Q9Y6F1 533 aa30.71■■■□□ 2.51
COL9A3-213ENST00000489045 FKBP8Q14318 412 aa30.7■■■□□ 2.51
COL9A3-213ENST00000489045 ZNF496Q96IT1 587 aaPredicted RBP30.7■■■□□ 2.51
COL9A3-213ENST00000489045 COL15A1P39059 1388 aa30.69■■■□□ 2.5
COL9A3-213ENST00000489045 HEG1Q9ULI3 1381 aa30.68■■■□□ 2.5
COL9A3-213ENST00000489045 DLG5Q8TDM6 1919 aa30.68■■■□□ 2.5
COL9A3-213ENST00000489045 BRCA1P38398 1863 aaKnown RBP30.67■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms