RNA–Protein interactions for RNA: ENST00000488920.2

CCHCR1-215, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 3

Gene CCHCR1, Length 715 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-215ENST00000488920 ITGB4P16144 1822 aa16.17■□□□□ 0.18
CCHCR1-215ENST00000488920 KDRP35968 1356 aa16.16■□□□□ 0.18
CCHCR1-215ENST00000488920 MAP3K5Q99683 1374 aa16.16■□□□□ 0.18
CCHCR1-215ENST00000488920 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.16■□□□□ 0.18
CCHCR1-215ENST00000488920 DIAPH1O60610 1272 aaKnown RBP16.16■□□□□ 0.18
CCHCR1-215ENST00000488920 KDM6AO15550 1401 aaPredicted RBP16.15■□□□□ 0.18
CCHCR1-215ENST00000488920 NFATC2IPQ8NCF5 419 aa16.15■□□□□ 0.18
CCHCR1-215ENST00000488920 SLC4A9Q96Q91 983 aa16.15■□□□□ 0.18
CCHCR1-215ENST00000488920 TUBGCP6Q96RT7 1819 aa16.15■□□□□ 0.18
CCHCR1-215ENST00000488920 QSER1Q2KHR3 1735 aa16.14■□□□□ 0.17
CCHCR1-215ENST00000488920 GNPATO15228 680 aa16.14■□□□□ 0.17
CCHCR1-215ENST00000488920 GPR162Q16538 588 aa16.14■□□□□ 0.17
CCHCR1-215ENST00000488920 NLGN2Q8NFZ4 835 aa16.14■□□□□ 0.17
CCHCR1-215ENST00000488920 C5P01031 1676 aa16.14■□□□□ 0.17
CCHCR1-215ENST00000488920 NPC1L1Q9UHC9 1359 aa16.13■□□□□ 0.17
CCHCR1-215ENST00000488920 SSFA2P28290 1259 aa16.13■□□□□ 0.17
CCHCR1-215ENST00000488920 AKAP4Q5JQC9 854 aa16.13■□□□□ 0.17
CCHCR1-215ENST00000488920 C4BP0C0L5 1744 aa16.13■□□□□ 0.17
CCHCR1-215ENST00000488920 PTCD1O75127 700 aaKnown RBP16.12■□□□□ 0.17
CCHCR1-215ENST00000488920 PELP1Q8IZL8 1130 aaKnown RBP16.12■□□□□ 0.17
CCHCR1-215ENST00000488920 LGR6Q9HBX8 967 aa16.12■□□□□ 0.17
CCHCR1-215ENST00000488920 U2SURPO15042 1029 aaKnown RBP16.11■□□□□ 0.17
CCHCR1-215ENST00000488920 MTHFSDQ2M296 383 aaKnown RBP16.11■□□□□ 0.17
CCHCR1-215ENST00000488920 TRAPPC3LQ5T215 181 aa16.09■□□□□ 0.17
CCHCR1-215ENST00000488920 RTCBQ9Y3I0 505 aaKnown RBP16.09■□□□□ 0.17
CCHCR1-215ENST00000488920 TAF1LQ8IZX4 1826 aa16.09■□□□□ 0.17
CCHCR1-215ENST00000488920 UTRNP46939 3433 aa16.09■□□□□ 0.17
CCHCR1-215ENST00000488920 RNMTO43148 476 aaKnown RBP16.08■□□□□ 0.16
CCHCR1-215ENST00000488920 RC3H1Q5TC82 1133 aaKnown RBP16.08■□□□□ 0.16
CCHCR1-215ENST00000488920 SLC52A2Q9HAB3 445 aa16.08■□□□□ 0.16
CCHCR1-215ENST00000488920 COL24A1Q17RW2 1714 aa16.08■□□□□ 0.16
CCHCR1-215ENST00000488920 ARHGEF1Q92888 912 aaKnown RBP16.07■□□□□ 0.16
CCHCR1-215ENST00000488920 CD2APQ9Y5K6 639 aa16.07■□□□□ 0.16
CCHCR1-215ENST00000488920 CNTNAP4Q9C0A0 1308 aa16.06■□□□□ 0.16
CCHCR1-215ENST00000488920 RPS6KA4O75676 772 aa16.06■□□□□ 0.16
CCHCR1-215ENST00000488920 YBX3P16989 372 aaKnown RBP eCLIP16.05■□□□□ 0.16
CCHCR1-215ENST00000488920 SLC39A6Q13433 755 aa16.05■□□□□ 0.16
CCHCR1-215ENST00000488920 CFAP53Q96M91 514 aa16.05■□□□□ 0.16
CCHCR1-215ENST00000488920 COL3A1P02461 1466 aaPredicted RBP16.04■□□□□ 0.16
CCHCR1-215ENST00000488920 MMP10P09238 476 aa16.04■□□□□ 0.16
CCHCR1-215ENST00000488920 PPP2R1AP30153 589 aa16.04■□□□□ 0.16
CCHCR1-215ENST00000488920 RFC4P35249 363 aa16.04■□□□□ 0.16
CCHCR1-215ENST00000488920 CRKLP46109 303 aaKnown RBP16.04■□□□□ 0.16
CCHCR1-215ENST00000488920 UBR3Q6ZT12 1888 aa16.03■□□□□ 0.16
CCHCR1-215ENST00000488920 ADRA2BP18089 450 aa16.03■□□□□ 0.16
CCHCR1-215ENST00000488920 NLGN1Q8N2Q7 840 aa16.03■□□□□ 0.16
CCHCR1-215ENST00000488920 GOLGB1Q14789 3259 aaKnown RBP16.03■□□□□ 0.16
CCHCR1-215ENST00000488920 INTS5Q6P9B9 1019 aaKnown RBP16.02■□□□□ 0.16
CCHCR1-215ENST00000488920 DNAJC10Q8IXB1 793 aa16.02■□□□□ 0.16
CCHCR1-215ENST00000488920 ZNF784Q8NCA9 323 aaPredicted RBP16.02■□□□□ 0.16
CCHCR1-215ENST00000488920 GRIN3BO60391 1043 aa16.01■□□□□ 0.15
CCHCR1-215ENST00000488920 GYS1P13807 737 aa16.01■□□□□ 0.15
CCHCR1-215ENST00000488920 IL17REQ8NFR9 667 aa16.01■□□□□ 0.15
CCHCR1-215ENST00000488920 GAS2L2Q8NHY3 880 aa16.01■□□□□ 0.15
CCHCR1-215ENST00000488920 PHACTR3Q96KR7 559 aa16.01■□□□□ 0.15
CCHCR1-215ENST00000488920 WWC3Q9ULE0 1092 aa16.01■□□□□ 0.15
CCHCR1-215ENST00000488920 NUDCQ9Y266 331 aa16.01■□□□□ 0.15
CCHCR1-215ENST00000488920 GNAT3A8MTJ3 354 aa16■□□□□ 0.15
CCHCR1-215ENST00000488920 U2AF1L5P0DN76 240 aaPredicted RBP16■□□□□ 0.15
CCHCR1-215ENST00000488920 PRKAR2BP31323 418 aa16■□□□□ 0.15
CCHCR1-215ENST00000488920 U2AF1Q01081 240 aaKnown RBP eCLIP16■□□□□ 0.15
CCHCR1-215ENST00000488920 RSPH6AQ9H0K4 717 aa16■□□□□ 0.15
CCHCR1-215ENST00000488920 SRP68Q9UHB9 627 aaKnown RBP16■□□□□ 0.15
CCHCR1-215ENST00000488920 CYP19A1P11511 503 aaPredicted RBP15.99■□□□□ 0.15
CCHCR1-215ENST00000488920 CCDC87Q9NVE4 849 aa15.99■□□□□ 0.15
CCHCR1-215ENST00000488920 TEFQ10587 303 aa15.98■□□□□ 0.15
CCHCR1-215ENST00000488920 ZNF831Q5JPB2 1677 aa15.98■□□□□ 0.15
CCHCR1-215ENST00000488920 SCN11AQ9UI33 1791 aa15.98■□□□□ 0.15
CCHCR1-215ENST00000488920 TTC5Q8N0Z6 440 aa15.97■□□□□ 0.15
CCHCR1-215ENST00000488920 PARP3Q9Y6F1 533 aa15.97■□□□□ 0.15
CCHCR1-215ENST00000488920 MRC1P22897 1456 aa15.97■□□□□ 0.15
CCHCR1-215ENST00000488920 FKBP8Q14318 412 aa15.96■□□□□ 0.15
CCHCR1-215ENST00000488920 VSIG10Q8N0Z9 540 aa15.96■□□□□ 0.15
CCHCR1-215ENST00000488920 USP42Q9H9J4 1324 aaKnown RBP15.95■□□□□ 0.14
CCHCR1-215ENST00000488920 COL5A3P25940 1745 aaPredicted RBP15.95■□□□□ 0.14
CCHCR1-215ENST00000488920 A0A0G2JLW4 131 aa15.95■□□□□ 0.14
CCHCR1-215ENST00000488920 FCHSD2O94868 740 aa15.95■□□□□ 0.14
CCHCR1-215ENST00000488920 SOS1Q07889 1333 aaPredicted RBP15.94■□□□□ 0.14
CCHCR1-215ENST00000488920 ZPR1O75312 459 aa15.94■□□□□ 0.14
CCHCR1-215ENST00000488920 ZNF790Q6PG37 636 aa15.94■□□□□ 0.14
CCHCR1-215ENST00000488920 ZNF496Q96IT1 587 aaPredicted RBP15.94■□□□□ 0.14
CCHCR1-215ENST00000488920 ZBTB1Q9Y2K1 713 aa15.94■□□□□ 0.14
CCHCR1-215ENST00000488920 MYH14Q7Z406 1995 aaKnown RBP15.94■□□□□ 0.14
CCHCR1-215ENST00000488920 KCPQ6ZWJ8 1503 aa15.94■□□□□ 0.14
CCHCR1-215ENST00000488920 CANXP27824 592 aaKnown RBP15.93■□□□□ 0.14
CCHCR1-215ENST00000488920 TGFB2P61812 414 aa15.93■□□□□ 0.14
CCHCR1-215ENST00000488920 USPL1Q5W0Q7 1092 aa15.93■□□□□ 0.14
CCHCR1-215ENST00000488920 TJP1Q07157 1748 aa15.92■□□□□ 0.14
CCHCR1-215ENST00000488920 KCNQ3O43525 872 aa15.92■□□□□ 0.14
CCHCR1-215ENST00000488920 STARD3NLO95772 234 aa15.92■□□□□ 0.14
CCHCR1-215ENST00000488920 DDR1Q08345 913 aa15.92■□□□□ 0.14
CCHCR1-215ENST00000488920 MCM10Q7L590 875 aa15.92■□□□□ 0.14
CCHCR1-215ENST00000488920 ADAMTS7Q9UKP4 1686 aa15.92■□□□□ 0.14
CCHCR1-215ENST00000488920 CEMIPQ8WUJ3 1361 aa15.91■□□□□ 0.14
CCHCR1-215ENST00000488920 CICQ96RK0 1608 aaPredicted RBP15.91■□□□□ 0.14
CCHCR1-215ENST00000488920 BTBD11A6QL63 1104 aa15.91■□□□□ 0.14
CCHCR1-215ENST00000488920 DPEP1P16444 411 aa15.91■□□□□ 0.14
CCHCR1-215ENST00000488920 TM4SF1P30408 202 aa15.91■□□□□ 0.14
CCHCR1-215ENST00000488920 RTF1Q92541 710 aaKnown RBP15.91■□□□□ 0.14
CCHCR1-215ENST00000488920 DCTN1Q14203 1278 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms