RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-212	ENST00000488896	FHDC1	Q9C0D6	1143 aa	Predicted RBP	10.12	□□□□□ -0.79
PTPN4-212	ENST00000488896	CUEDC1	Q9NWM3	386 aa	Predicted RBP	10.12	□□□□□ -0.79
PTPN4-212	ENST00000488896	TFIP11	Q9UBB9	837 aa	Known RBP	10.12	□□□□□ -0.79
PTPN4-212	ENST00000488896	LZTS3	O60299	673 aa	Predicted RBP	10.11	□□□□□ -0.79
PTPN4-212	ENST00000488896	GNAS	Q5JWF2	1037 aa		10.11	□□□□□ -0.79
PTPN4-212	ENST00000488896	GPR161	Q8N6U8	529 aa	Known RBP	10.11	□□□□□ -0.79
PTPN4-212	ENST00000488896	TIMMDC1	Q9NPL8	285 aa		10.11	□□□□□ -0.79
PTPN4-212	ENST00000488896	SPATA31C2	B4DYI2	1134 aa		10.1	□□□□□ -0.79
PTPN4-212	ENST00000488896	WIPF1	O43516	503 aa		10.1	□□□□□ -0.79
PTPN4-212	ENST00000488896	VSIG8	P0DPA2	414 aa		10.1	□□□□□ -0.79
PTPN4-212	ENST00000488896	TMEM229A	B2RXF0	380 aa		10.09	□□□□□ -0.79
PTPN4-212	ENST00000488896	SV2A	Q7L0J3	742 aa		10.09	□□□□□ -0.79
PTPN4-212	ENST00000488896	DYRK1B	Q9Y463	629 aa		10.09	□□□□□ -0.79
PTPN4-212	ENST00000488896	C4orf17	Q53FE4	359 aa		10.08	□□□□□ -0.8
PTPN4-212	ENST00000488896	PLEKHM2	Q8IWE5	1019 aa		10.08	□□□□□ -0.8
PTPN4-212	ENST00000488896	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	10.08	□□□□□ -0.8
PTPN4-212	ENST00000488896	GPAM	Q9HCL2	828 aa		10.08	□□□□□ -0.8
PTPN4-212	ENST00000488896	MKRN1	Q9UHC7	482 aa	Known RBP	10.08	□□□□□ -0.8
PTPN4-212	ENST00000488896	PALM3	A6NDB9	673 aa	Predicted RBP	10.07	□□□□□ -0.8
PTPN4-212	ENST00000488896	SMTN	P53814	917 aa		10.07	□□□□□ -0.8
PTPN4-212	ENST00000488896	TRIM50	Q86XT4	487 aa		10.07	□□□□□ -0.8
PTPN4-212	ENST00000488896	NANOS1	Q8WY41	292 aa	Known RBP	10.07	□□□□□ -0.8
PTPN4-212	ENST00000488896	CLDN10	P78369	228 aa		10.06	□□□□□ -0.8
PTPN4-212	ENST00000488896	INSM1	Q01101	510 aa	Predicted RBP	10.06	□□□□□ -0.8
PTPN4-212	ENST00000488896	PPARGC1B	Q86YN6	1023 aa	Known RBP	10.06	□□□□□ -0.8
PTPN4-212	ENST00000488896	COL25A1	Q9BXS0	654 aa	Predicted RBP	10.06	□□□□□ -0.8
PTPN4-212	ENST00000488896	KIAA1024	Q9UPX6	916 aa		10.06	□□□□□ -0.8
PTPN4-212	ENST00000488896	MAFB	Q9Y5Q3	323 aa	Predicted RBP	10.06	□□□□□ -0.8
PTPN4-212	ENST00000488896	PLA2G4A	P47712	749 aa		10.05	□□□□□ -0.8
PTPN4-212	ENST00000488896	DBN1	Q16643	649 aa		10.05	□□□□□ -0.8
PTPN4-212	ENST00000488896	WDR44	Q5JSH3	913 aa		10.05	□□□□□ -0.8
PTPN4-212	ENST00000488896	OGFOD1	Q8N543	542 aa		10.05	□□□□□ -0.8
PTPN4-212	ENST00000488896	TPCN2	Q8NHX9	752 aa		10.05	□□□□□ -0.8
PTPN4-212	ENST00000488896	RHBDD1	Q8TEB9	315 aa		10.05	□□□□□ -0.8
PTPN4-212	ENST00000488896	ZNF594	Q96JF6	807 aa	Predicted RBP	10.05	□□□□□ -0.8
PTPN4-212	ENST00000488896	CNTNAP3B	Q96NU0	1288 aa		10.05	□□□□□ -0.8
PTPN4-212	ENST00000488896	CNTNAP3	Q9BZ76	1288 aa		10.05	□□□□□ -0.8
PTPN4-212	ENST00000488896	PPP1R12C	Q9BZL4	782 aa		10.05	□□□□□ -0.8
PTPN4-212	ENST00000488896	DNAAF2	Q9NVR5	837 aa	Known RBP	10.05	□□□□□ -0.8
PTPN4-212	ENST00000488896	ZNF358	Q9NW07	568 aa		10.05	□□□□□ -0.8
PTPN4-212	ENST00000488896	F11	P03951	625 aa		10.04	□□□□□ -0.8
PTPN4-212	ENST00000488896	ATP1A2	P50993	1020 aa		10.04	□□□□□ -0.8
PTPN4-212	ENST00000488896	CCDC102B	Q68D86	513 aa		10.04	□□□□□ -0.8
PTPN4-212	ENST00000488896	TRIM22	Q8IYM9	498 aa		10.04	□□□□□ -0.8
PTPN4-212	ENST00000488896	ZNF837	Q96EG3	531 aa	Predicted RBP	10.04	□□□□□ -0.8
PTPN4-212	ENST00000488896	ZMYND15	Q9H091	742 aa		10.04	□□□□□ -0.8
PTPN4-212	ENST00000488896		A6NJY4	79 aa		10.03	□□□□□ -0.8
PTPN4-212	ENST00000488896	GPR25	O00155	361 aa		10.03	□□□□□ -0.8
PTPN4-212	ENST00000488896	BACH1	O14867	736 aa		10.03	□□□□□ -0.8
PTPN4-212	ENST00000488896	LMOD1	P29536	600 aa	Predicted RBP	10.03	□□□□□ -0.8
PTPN4-212	ENST00000488896	KRT76	Q01546	638 aa		10.03	□□□□□ -0.8
PTPN4-212	ENST00000488896	RNFT1	Q5M7Z0	435 aa		10.03	□□□□□ -0.8
PTPN4-212	ENST00000488896	AIDA	Q96BJ3	306 aa		10.03	□□□□□ -0.8
PTPN4-212	ENST00000488896	SLC4A9	Q96Q91	983 aa		10.03	□□□□□ -0.8
PTPN4-212	ENST00000488896	USP3	Q9Y6I4	520 aa		10.03	□□□□□ -0.8
PTPN4-212	ENST00000488896	ZBTB7B	O15156	539 aa	Predicted RBP	10.02	□□□□□ -0.81
PTPN4-212	ENST00000488896	RASA1	P20936	1047 aa		10.02	□□□□□ -0.81
PTPN4-212	ENST00000488896	GTPBP3	Q969Y2	492 aa	Known RBP	10.02	□□□□□ -0.81
PTPN4-212	ENST00000488896	NIFK	Q9BYG3	293 aa	Known RBP	10.02	□□□□□ -0.81
PTPN4-212	ENST00000488896		A0A1B0GTH6	734 aa		10.01	□□□□□ -0.81
PTPN4-212	ENST00000488896		H7C1W4	665 aa		10.01	□□□□□ -0.81
PTPN4-212	ENST00000488896	MSX1	P28360	303 aa		10.01	□□□□□ -0.81
PTPN4-212	ENST00000488896	TBCEL	Q5QJ74	424 aa		10.01	□□□□□ -0.81
PTPN4-212	ENST00000488896	TNS4	Q8IZW8	715 aa		10.01	□□□□□ -0.81
PTPN4-212	ENST00000488896	RUBCNL	Q9H714	662 aa		10.01	□□□□□ -0.81
PTPN4-212	ENST00000488896	CABP1	Q9NZU7	370 aa		10.01	□□□□□ -0.81
PTPN4-212	ENST00000488896	PARP3	Q9Y6F1	533 aa		10.01	□□□□□ -0.81
PTPN4-212	ENST00000488896	CDK2AP1	O14519	115 aa		10	□□□□□ -0.81
PTPN4-212	ENST00000488896	ZSCAN1	Q8NBB4	408 aa		10	□□□□□ -0.81
PTPN4-212	ENST00000488896	NUCKS1	Q9H1E3	243 aa	Known RBP	10	□□□□□ -0.81
PTPN4-212	ENST00000488896	RBM19	Q9Y4C8	960 aa	Known RBP	10	□□□□□ -0.81
PTPN4-212	ENST00000488896	SFI1	A8K8P3	1242 aa		9.99	□□□□□ -0.81
PTPN4-212	ENST00000488896	CSB-PGBD3	P0DP91	1061 aa		9.99	□□□□□ -0.81
PTPN4-212	ENST00000488896	RFX1	P22670	979 aa		9.99	□□□□□ -0.81
PTPN4-212	ENST00000488896	MTFR1	Q15390	333 aa		9.99	□□□□□ -0.81
PTPN4-212	ENST00000488896	FOXR1	Q6PIV2	292 aa		9.99	□□□□□ -0.81
PTPN4-212	ENST00000488896	PGBD3	Q8N328	593 aa		9.99	□□□□□ -0.81
PTPN4-212	ENST00000488896	LARGE2	Q8N3Y3	721 aa		9.99	□□□□□ -0.81
PTPN4-212	ENST00000488896	CDCA8	Q53HL2	280 aa		9.98	□□□□□ -0.81
PTPN4-212	ENST00000488896	LARP1	Q6PKG0	1096 aa	Known RBP	9.98	□□□□□ -0.81
PTPN4-212	ENST00000488896	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	9.98	□□□□□ -0.81
PTPN4-212	ENST00000488896	SLC9A9	Q8IVB4	645 aa		9.97	□□□□□ -0.81
PTPN4-212	ENST00000488896	GMCL1	Q96IK5	515 aa		9.97	□□□□□ -0.81
PTPN4-212	ENST00000488896	VRTN	Q9H8Y1	702 aa		9.97	□□□□□ -0.81
PTPN4-212	ENST00000488896	SCHIP1	Q9P0W5	487 aa	Predicted RBP	9.97	□□□□□ -0.81
PTPN4-212	ENST00000488896	GAS6	Q14393	721 aa		9.96	□□□□□ -0.82
PTPN4-212	ENST00000488896	KANK4	Q5T7N3	995 aa	Predicted RBP	9.96	□□□□□ -0.82
PTPN4-212	ENST00000488896	TSEN2	Q8NCE0	465 aa	Known RBP	9.96	□□□□□ -0.82
PTPN4-212	ENST00000488896	TRERF1	Q96PN7	1200 aa		9.96	□□□□□ -0.82
PTPN4-212	ENST00000488896	ARID3C	A6NKF2	412 aa		9.95	□□□□□ -0.82
PTPN4-212	ENST00000488896	LGR5	O75473	907 aa		9.95	□□□□□ -0.82
PTPN4-212	ENST00000488896	THBS1	P07996	1170 aa		9.95	□□□□□ -0.82
PTPN4-212	ENST00000488896	LOR	P23490	312 aa	Predicted RBP	9.95	□□□□□ -0.82
PTPN4-212	ENST00000488896	NBPF1	Q3BBV0	1214 aa		9.95	□□□□□ -0.82
PTPN4-212	ENST00000488896	CRTC2	Q53ET0	693 aa	Predicted RBP	9.95	□□□□□ -0.82
PTPN4-212	ENST00000488896	CFAP70	Q5T0N1	1121 aa		9.95	□□□□□ -0.82
PTPN4-212	ENST00000488896	SIX5	Q8N196	739 aa		9.95	□□□□□ -0.82
PTPN4-212	ENST00000488896	ZNF232	Q9UNY5	417 aa		9.95	□□□□□ -0.82
PTPN4-212	ENST00000488896	EPHA4	P54764	986 aa		9.94	□□□□□ -0.82
PTPN4-212	ENST00000488896	ARSJ	Q5FYB0	599 aa	Predicted RBP	9.94	□□□□□ -0.82

Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms