RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 GOLGB1Q14789 3259 aaKnown RBP30.69■■■□□ 2.5
PTPN4-211ENST00000488279 C4BP0C0L5 1744 aa30.68■■■□□ 2.5
PTPN4-211ENST00000488279 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP30.68■■■□□ 2.5
PTPN4-211ENST00000488279 CABP4P57796 275 aa30.68■■■□□ 2.5
PTPN4-211ENST00000488279 ITPK1Q13572 414 aa30.68■■■□□ 2.5
PTPN4-211ENST00000488279 CC2D1BQ5T0F9 858 aaKnown RBP30.68■■■□□ 2.5
PTPN4-211ENST00000488279 AMIGO3Q86WK7 504 aa30.68■■■□□ 2.5
PTPN4-211ENST00000488279 SSFA2P28290 1259 aa30.67■■■□□ 2.5
PTPN4-211ENST00000488279 TAF1LQ8IZX4 1826 aa30.67■■■□□ 2.5
PTPN4-211ENST00000488279 NLGN2Q8NFZ4 835 aa30.66■■■□□ 2.5
PTPN4-211ENST00000488279 KDRP35968 1356 aa30.66■■■□□ 2.5
PTPN4-211ENST00000488279 SMIM5Q71RC9 77 aa30.65■■■□□ 2.5
PTPN4-211ENST00000488279 RBM42Q9BTD8 480 aaKnown RBP30.64■■■□□ 2.5
PTPN4-211ENST00000488279 GNPATO15228 680 aa30.63■■■□□ 2.49
PTPN4-211ENST00000488279 PELP1Q8IZL8 1130 aaKnown RBP30.63■■■□□ 2.49
PTPN4-211ENST00000488279 KDM6AO15550 1401 aaPredicted RBP30.62■■■□□ 2.49
PTPN4-211ENST00000488279 NFATC2IPQ8NCF5 419 aa30.6■■■□□ 2.49
PTPN4-211ENST00000488279 SLC4A9Q96Q91 983 aa30.6■■■□□ 2.49
PTPN4-211ENST00000488279 CD2APQ9Y5K6 639 aa30.6■■■□□ 2.49
PTPN4-211ENST00000488279 DIAPH1O60610 1272 aaKnown RBP30.59■■■□□ 2.49
PTPN4-211ENST00000488279 NPC1L1Q9UHC9 1359 aa30.57■■■□□ 2.48
PTPN4-211ENST00000488279 HMOX1P09601 288 aa30.57■■■□□ 2.48
PTPN4-211ENST00000488279 CNGB1Q14028 1251 aaPredicted RBP30.57■■■□□ 2.48
PTPN4-211ENST00000488279 AKAP4Q5JQC9 854 aa30.57■■■□□ 2.48
PTPN4-211ENST00000488279 RTCBQ9Y3I0 505 aaKnown RBP30.57■■■□□ 2.48
PTPN4-211ENST00000488279 TRAPPC3LQ5T215 181 aa30.55■■■□□ 2.48
PTPN4-211ENST00000488279 RC3H1Q5TC82 1133 aaKnown RBP30.55■■■□□ 2.48
PTPN4-211ENST00000488279 PTCD1O75127 700 aaKnown RBP30.54■■■□□ 2.48
PTPN4-211ENST00000488279 ZNF784Q8NCA9 323 aaPredicted RBP30.54■■■□□ 2.48
PTPN4-211ENST00000488279 UBR3Q6ZT12 1888 aa30.54■■■□□ 2.48
PTPN4-211ENST00000488279 GRIN3BO60391 1043 aa30.52■■■□□ 2.48
PTPN4-211ENST00000488279 CNTNAP4Q9C0A0 1308 aa30.5■■■□□ 2.47
PTPN4-211ENST00000488279 ADRA2BP18089 450 aa30.5■■■□□ 2.47
PTPN4-211ENST00000488279 YBX3P16989 372 aaKnown RBP eCLIP30.49■■■□□ 2.47
PTPN4-211ENST00000488279 LGR6Q9HBX8 967 aa30.49■■■□□ 2.47
PTPN4-211ENST00000488279 RPS6KA4O75676 772 aa30.48■■■□□ 2.47
PTPN4-211ENST00000488279 MTHFSDQ2M296 383 aaKnown RBP30.48■■■□□ 2.47
PTPN4-211ENST00000488279 ARHGEF1Q92888 912 aaKnown RBP30.48■■■□□ 2.47
PTPN4-211ENST00000488279 SLC52A2Q9HAB3 445 aa30.48■■■□□ 2.47
PTPN4-211ENST00000488279 RNMTO43148 476 aaKnown RBP30.46■■■□□ 2.47
PTPN4-211ENST00000488279 RFC4P35249 363 aa30.46■■■□□ 2.47
PTPN4-211ENST00000488279 NLGN1Q8N2Q7 840 aa30.46■■■□□ 2.47
PTPN4-211ENST00000488279 ZNF831Q5JPB2 1677 aa30.46■■■□□ 2.47
PTPN4-211ENST00000488279 U2SURPO15042 1029 aaKnown RBP30.45■■■□□ 2.47
PTPN4-211ENST00000488279 MMP10P09238 476 aa30.45■■■□□ 2.47
PTPN4-211ENST00000488279 CHD4Q14839 1912 aa30.45■■■□□ 2.46
PTPN4-211ENST00000488279 CRKLP46109 303 aaKnown RBP30.43■■■□□ 2.46
PTPN4-211ENST00000488279 GYS1P13807 737 aa30.39■■■□□ 2.46
PTPN4-211ENST00000488279 CFAP53Q96M91 514 aa30.39■■■□□ 2.46
PTPN4-211ENST00000488279 SLC39A6Q13433 755 aa30.38■■■□□ 2.45
PTPN4-211ENST00000488279 SCN11AQ9UI33 1791 aa30.38■■■□□ 2.45
PTPN4-211ENST00000488279 COL3A1P02461 1466 aaPredicted RBP30.38■■■□□ 2.45
PTPN4-211ENST00000488279 GAS2L2Q8NHY3 880 aa30.36■■■□□ 2.45
PTPN4-211ENST00000488279 COL5A3P25940 1745 aaPredicted RBP30.36■■■□□ 2.45
PTPN4-211ENST00000488279 INTS5Q6P9B9 1019 aaKnown RBP30.35■■■□□ 2.45
PTPN4-211ENST00000488279 DNAJC10Q8IXB1 793 aa30.35■■■□□ 2.45
PTPN4-211ENST00000488279 PARP3Q9Y6F1 533 aa30.34■■■□□ 2.45
PTPN4-211ENST00000488279 GNAT3A8MTJ3 354 aa30.33■■■□□ 2.45
PTPN4-211ENST00000488279 MRC1P22897 1456 aa30.32■■■□□ 2.44
PTPN4-211ENST00000488279 CCDC87Q9NVE4 849 aa30.32■■■□□ 2.44
PTPN4-211ENST00000488279 WWC3Q9ULE0 1092 aa30.32■■■□□ 2.44
PTPN4-211ENST00000488279 NUDCQ9Y266 331 aa30.32■■■□□ 2.44
PTPN4-211ENST00000488279 TGFB2P61812 414 aa30.31■■■□□ 2.44
PTPN4-211ENST00000488279 MYH14Q7Z406 1995 aaKnown RBP30.31■■■□□ 2.44
PTPN4-211ENST00000488279 CYP19A1P11511 503 aaPredicted RBP30.3■■■□□ 2.44
PTPN4-211ENST00000488279 PPP2R1AP30153 589 aa30.3■■■□□ 2.44
PTPN4-211ENST00000488279 VSIG10Q8N0Z9 540 aa30.3■■■□□ 2.44
PTPN4-211ENST00000488279 SRP68Q9UHB9 627 aaKnown RBP30.3■■■□□ 2.44
PTPN4-211ENST00000488279 USP42Q9H9J4 1324 aaKnown RBP30.29■■■□□ 2.44
PTPN4-211ENST00000488279 TEFQ10587 303 aa30.29■■■□□ 2.44
PTPN4-211ENST00000488279 TTC5Q8N0Z6 440 aa30.29■■■□□ 2.44
PTPN4-211ENST00000488279 IL17REQ8NFR9 667 aa30.29■■■□□ 2.44
PTPN4-211ENST00000488279 ZPR1O75312 459 aa30.27■■■□□ 2.44
PTPN4-211ENST00000488279 PRKAR2BP31323 418 aa30.27■■■□□ 2.44
PTPN4-211ENST00000488279 FKBP8Q14318 412 aa30.27■■■□□ 2.44
PTPN4-211ENST00000488279 CICQ96RK0 1608 aaPredicted RBP30.26■■■□□ 2.44
PTPN4-211ENST00000488279 TJP1Q07157 1748 aa30.26■■■□□ 2.43
PTPN4-211ENST00000488279 PHACTR3Q96KR7 559 aa30.26■■■□□ 2.43
PTPN4-211ENST00000488279 RSPH6AQ9H0K4 717 aa30.26■■■□□ 2.43
PTPN4-211ENST00000488279 A0A0G2JLW4 131 aa30.25■■■□□ 2.43
PTPN4-211ENST00000488279 SOS1Q07889 1333 aaPredicted RBP30.24■■■□□ 2.43
PTPN4-211ENST00000488279 ADAMTS7Q9UKP4 1686 aa30.24■■■□□ 2.43
PTPN4-211ENST00000488279 U2AF1L5P0DN76 240 aaPredicted RBP30.24■■■□□ 2.43
PTPN4-211ENST00000488279 U2AF1Q01081 240 aaKnown RBP eCLIP30.24■■■□□ 2.43
PTPN4-211ENST00000488279 C10orf71Q711Q0 1435 aa30.23■■■□□ 2.43
PTPN4-211ENST00000488279 KCPQ6ZWJ8 1503 aa30.23■■■□□ 2.43
PTPN4-211ENST00000488279 STARD3NLO95772 234 aa30.23■■■□□ 2.43
PTPN4-211ENST00000488279 USPL1Q5W0Q7 1092 aa30.22■■■□□ 2.43
PTPN4-211ENST00000488279 ZNF790Q6PG37 636 aa30.22■■■□□ 2.43
PTPN4-211ENST00000488279 PXDNLA1KZ92 1463 aa30.22■■■□□ 2.43
PTPN4-211ENST00000488279 GIGYF1O75420 1035 aaPredicted RBP30.21■■■□□ 2.43
PTPN4-211ENST00000488279 C1QTNF8P60827 252 aa30.21■■■□□ 2.43
PTPN4-211ENST00000488279 ZBTB1Q9Y2K1 713 aa30.21■■■□□ 2.43
PTPN4-211ENST00000488279 FCHSD2O94868 740 aa30.2■■■□□ 2.43
PTPN4-211ENST00000488279 DPEP1P16444 411 aa30.2■■■□□ 2.43
PTPN4-211ENST00000488279 TM4SF1P30408 202 aa30.2■■■□□ 2.43
PTPN4-211ENST00000488279 NARFQ9UHQ1 456 aa30.2■■■□□ 2.43
PTPN4-211ENST00000488279 BCS1LQ9Y276 419 aa30.2■■■□□ 2.43
PTPN4-211ENST00000488279 C4AP0C0L4 1744 aa30.19■■■□□ 2.42
PTPN4-211ENST00000488279 DDR1Q08345 913 aa30.19■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 117.7 ms