RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 NUP62CLQ9H1M0 184 aa7.44□□□□□ -1.22
VPS13D-209ENST00000487188 ABCA6Q8N139 1617 aa7.44□□□□□ -1.22
VPS13D-209ENST00000487188 RPAP2Q8IXW5 612 aaPredicted RBP7.44□□□□□ -1.22
VPS13D-209ENST00000487188 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.44□□□□□ -1.22
VPS13D-209ENST00000487188 KIF18AQ8NI77 898 aa7.44□□□□□ -1.22
VPS13D-209ENST00000487188 FAM200AQ8TCP9 573 aa7.44□□□□□ -1.22
VPS13D-209ENST00000487188 HECW2Q9P2P5 1572 aa7.43□□□□□ -1.22
VPS13D-209ENST00000487188 DIP2CQ9Y2E4 1556 aa7.43□□□□□ -1.22
VPS13D-209ENST00000487188 TRAPPC8Q9Y2L5 1435 aa7.43□□□□□ -1.22
VPS13D-209ENST00000487188 NSD2O96028 1365 aa7.43□□□□□ -1.22
VPS13D-209ENST00000487188 NRDCO43847 1150 aa7.43□□□□□ -1.22
VPS13D-209ENST00000487188 HMOX1P09601 288 aa7.43□□□□□ -1.22
VPS13D-209ENST00000487188 ZSCAN22P10073 491 aaPredicted RBP7.43□□□□□ -1.22
VPS13D-209ENST00000487188 HAP1P54257 671 aaPredicted RBP7.43□□□□□ -1.22
VPS13D-209ENST00000487188 PTPN14Q15678 1187 aa7.43□□□□□ -1.22
VPS13D-209ENST00000487188 TMEM132EQ6IEE7 984 aa7.43□□□□□ -1.22
VPS13D-209ENST00000487188 KCNF1Q9H3M0 494 aa7.43□□□□□ -1.22
VPS13D-209ENST00000487188 CABP2Q9NPB3 220 aa7.43□□□□□ -1.22
VPS13D-209ENST00000487188 ATP10AO60312 1499 aa7.43□□□□□ -1.22
VPS13D-209ENST00000487188 SLFN14P0C7P3 912 aa7.43□□□□□ -1.22
VPS13D-209ENST00000487188 NAA30Q147X3 362 aaPredicted RBP7.43□□□□□ -1.22
VPS13D-209ENST00000487188 SLC4A10Q6U841 1118 aa7.43□□□□□ -1.22
VPS13D-209ENST00000487188 ATAD2Q6PL18 1390 aa7.43□□□□□ -1.22
VPS13D-209ENST00000487188 STX6O43752 255 aa7.43□□□□□ -1.22
VPS13D-209ENST00000487188 LMOD3Q0VAK6 560 aa7.43□□□□□ -1.22
VPS13D-209ENST00000487188 GPS2Q13227 327 aa7.43□□□□□ -1.22
VPS13D-209ENST00000487188 CAMK4Q16566 473 aa7.43□□□□□ -1.22
VPS13D-209ENST00000487188 TNMDQ9H2S6 317 aa7.43□□□□□ -1.22
VPS13D-209ENST00000487188 SHPRHQ149N8 1683 aa7.42□□□□□ -1.22
VPS13D-209ENST00000487188 MLH3Q9UHC1 1453 aa7.42□□□□□ -1.22
VPS13D-209ENST00000487188 KIF3BO15066 747 aa7.42□□□□□ -1.22
VPS13D-209ENST00000487188 LRMPQ12912 555 aa7.42□□□□□ -1.22
VPS13D-209ENST00000487188 CUL4AQ13619 759 aa7.42□□□□□ -1.22
VPS13D-209ENST00000487188 EFCAB2Q5VUJ9 269 aa7.42□□□□□ -1.22
VPS13D-209ENST00000487188 TSPYL6Q8N831 410 aa7.42□□□□□ -1.22
VPS13D-209ENST00000487188 ANKRD44Q8N8A2 993 aa7.42□□□□□ -1.22
VPS13D-209ENST00000487188 ARGLU1Q9NWB6 273 aaPredicted RBP7.42□□□□□ -1.22
VPS13D-209ENST00000487188 TERF2IPQ9NYB0 399 aa7.42□□□□□ -1.22
VPS13D-209ENST00000487188 CLIP2Q9UDT6 1046 aa7.42□□□□□ -1.22
VPS13D-209ENST00000487188 INO80Q9ULG1 1556 aaPredicted RBP7.42□□□□□ -1.22
VPS13D-209ENST00000487188 VAMP4O75379 141 aa7.42□□□□□ -1.22
VPS13D-209ENST00000487188 BMS1Q14692 1282 aaKnown RBP7.42□□□□□ -1.22
VPS13D-209ENST00000487188 RNF20Q5VTR2 975 aa7.42□□□□□ -1.22
VPS13D-209ENST00000487188 ESYT1Q9BSJ8 1104 aa7.42□□□□□ -1.22
VPS13D-209ENST00000487188 MORC2Q9Y6X9 1032 aaPredicted RBP7.42□□□□□ -1.22
VPS13D-209ENST00000487188 ELF2Q15723 593 aa7.42□□□□□ -1.22
VPS13D-209ENST00000487188 TSHZ3Q63HK5 1081 aa7.42□□□□□ -1.22
VPS13D-209ENST00000487188 CKAP2LQ8IYA6 745 aa7.42□□□□□ -1.22
VPS13D-209ENST00000487188 ABCC4O15439 1325 aa7.41□□□□□ -1.22
VPS13D-209ENST00000487188 CCDC171Q6TFL3 1326 aa7.41□□□□□ -1.22
VPS13D-209ENST00000487188 F13A1P00488 732 aa7.41□□□□□ -1.22
VPS13D-209ENST00000487188 ANAPC15P60006 121 aa7.41□□□□□ -1.22
VPS13D-209ENST00000487188 LUZP1Q86V48 1076 aa7.41□□□□□ -1.22
VPS13D-209ENST00000487188 CREBRFQ8IUR6 639 aa7.41□□□□□ -1.22
VPS13D-209ENST00000487188 BICD2Q8TD16 824 aa7.41□□□□□ -1.22
VPS13D-209ENST00000487188 BECN2A8MW95 431 aa7.41□□□□□ -1.22
VPS13D-209ENST00000487188 TPM4P67936 248 aa7.41□□□□□ -1.22
VPS13D-209ENST00000487188 HDGFL2Q7Z4V5 671 aaPredicted RBP7.41□□□□□ -1.22
VPS13D-209ENST00000487188 GTF3C6Q969F1 213 aa7.41□□□□□ -1.22
VPS13D-209ENST00000487188 POLR3GO15318 223 aaPredicted RBP7.41□□□□□ -1.22
VPS13D-209ENST00000487188 TYRO3Q06418 890 aa7.41□□□□□ -1.22
VPS13D-209ENST00000487188 NFE2L2Q16236 605 aa7.41□□□□□ -1.22
VPS13D-209ENST00000487188 CERS3Q8IU89 383 aa7.41□□□□□ -1.22
VPS13D-209ENST00000487188 PLEKHF1Q96S99 279 aa7.41□□□□□ -1.22
VPS13D-209ENST00000487188 TRMT1Q9NXH9 659 aaKnown RBP7.41□□□□□ -1.22
VPS13D-209ENST00000487188 CWC15Q9P013 229 aaKnown RBP7.41□□□□□ -1.22
VPS13D-209ENST00000487188 ZNF215Q9UL58 517 aaPredicted RBP7.41□□□□□ -1.22
VPS13D-209ENST00000487188 PALD1Q9ULE6 856 aa7.41□□□□□ -1.22
VPS13D-209ENST00000487188 FCHSD2O94868 740 aa7.4□□□□□ -1.22
VPS13D-209ENST00000487188 PDE1AP54750 535 aa7.4□□□□□ -1.22
VPS13D-209ENST00000487188 KRT85P78386 507 aa7.4□□□□□ -1.22
VPS13D-209ENST00000487188 ZRSR1Q15695 479 aaKnown RBP7.4□□□□□ -1.22
VPS13D-209ENST00000487188 GOLGA6L1Q8N7Z2 621 aa7.4□□□□□ -1.22
VPS13D-209ENST00000487188 ERO1AQ96HE7 468 aa7.4□□□□□ -1.22
VPS13D-209ENST00000487188 LARP6Q9BRS8 491 aaKnown RBP7.4□□□□□ -1.22
VPS13D-209ENST00000487188 STK26Q9P289 416 aa7.4□□□□□ -1.22
VPS13D-209ENST00000487188 MED14O60244 1454 aa7.4□□□□□ -1.22
VPS13D-209ENST00000487188 SPHKAPQ2M3C7 1700 aa7.4□□□□□ -1.22
VPS13D-209ENST00000487188 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.4□□□□□ -1.22
VPS13D-209ENST00000487188 SLU7O95391 586 aaKnown RBP7.4□□□□□ -1.22
VPS13D-209ENST00000487188 DNM1Q05193 864 aaKnown RBP7.4□□□□□ -1.22
VPS13D-209ENST00000487188 ANO6Q4KMQ2 910 aa7.4□□□□□ -1.22
VPS13D-209ENST00000487188 GORABQ5T7V8 394 aa7.4□□□□□ -1.22
VPS13D-209ENST00000487188 CEP85Q6P2H3 762 aa7.4□□□□□ -1.22
VPS13D-209ENST00000487188 FILIP1Q7Z7B0 1213 aa7.4□□□□□ -1.22
VPS13D-209ENST00000487188 ZSCAN25Q6NSZ9 544 aa7.4□□□□□ -1.23
VPS13D-209ENST00000487188 MBIPQ9NS73 344 aa7.4□□□□□ -1.23
VPS13D-209ENST00000487188 EXOC6BQ9Y2D4 811 aa7.4□□□□□ -1.23
VPS13D-209ENST00000487188 RGS12O14924 1447 aa7.4□□□□□ -1.23
VPS13D-209ENST00000487188 PTCH1Q13635 1447 aa7.4□□□□□ -1.23
VPS13D-209ENST00000487188 CCDC83Q8IWF9 413 aa7.39□□□□□ -1.23
VPS13D-209ENST00000487188 TMEM87AQ8NBN3 555 aa7.39□□□□□ -1.23
VPS13D-209ENST00000487188 MNS1Q8NEH6 495 aa7.39□□□□□ -1.23
VPS13D-209ENST00000487188 SBNO2Q9Y2G9 1366 aa7.39□□□□□ -1.23
VPS13D-209ENST00000487188 SYT1P21579 422 aa7.39□□□□□ -1.23
VPS13D-209ENST00000487188 ZNF75DP51815 510 aa7.39□□□□□ -1.23
VPS13D-209ENST00000487188 TMCO3Q6UWJ1 677 aa7.39□□□□□ -1.23
VPS13D-209ENST00000487188 HOMER1Q86YM7 354 aa7.39□□□□□ -1.23
VPS13D-209ENST00000487188 TRPM2O94759 1503 aa7.39□□□□□ -1.23
VPS13D-209ENST00000487188 KIF2AO00139 706 aaPredicted RBP7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms