RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 R3HDM1Q15032 1099 aaKnown RBP9.9□□□□□ -0.82
HDAC3-209ENST00000486618 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.9□□□□□ -0.82
HDAC3-209ENST00000486618 BTG4Q9NY30 223 aa9.9□□□□□ -0.82
HDAC3-209ENST00000486618 NRXN1Q9ULB1 1477 aa9.9□□□□□ -0.83
HDAC3-209ENST00000486618 RGPD1P0DJD0 1748 aa9.9□□□□□ -0.83
HDAC3-209ENST00000486618 IFT172Q9UG01 1749 aa9.9□□□□□ -0.83
HDAC3-209ENST00000486618 DHX57Q6P158 1386 aaKnown RBP9.89□□□□□ -0.83
HDAC3-209ENST00000486618 NUDT18Q6ZVK8 323 aa9.89□□□□□ -0.83
HDAC3-209ENST00000486618 LRCH3Q96II8 777 aa9.89□□□□□ -0.83
HDAC3-209ENST00000486618 PIK3C2GO75747 1445 aa9.89□□□□□ -0.83
HDAC3-209ENST00000486618 TESPA1A2RU30 521 aaPredicted RBP9.88□□□□□ -0.83
HDAC3-209ENST00000486618 PTGDRQ13258 359 aa9.88□□□□□ -0.83
HDAC3-209ENST00000486618 PMFBP1Q8TBY8 1022 aa9.88□□□□□ -0.83
HDAC3-209ENST00000486618 C14orf93Q9H972 538 aaKnown RBP9.88□□□□□ -0.83
HDAC3-209ENST00000486618 WBP1LQ9NX94 342 aa9.88□□□□□ -0.83
HDAC3-209ENST00000486618 SPATA31E1Q6ZUB1 1445 aa9.88□□□□□ -0.83
HDAC3-209ENST00000486618 GPRASP1Q5JY77 1395 aa9.88□□□□□ -0.83
HDAC3-209ENST00000486618 ABCA3Q99758 1704 aa9.87□□□□□ -0.83
HDAC3-209ENST00000486618 SPATA31A5Q5VU36 1347 aa9.87□□□□□ -0.83
HDAC3-209ENST00000486618 SPATA31A7Q8IWB4 1347 aa9.87□□□□□ -0.83
HDAC3-209ENST00000486618 SAMD7Q7Z3H4 446 aa9.87□□□□□ -0.83
HDAC3-209ENST00000486618 POGKQ9P215 609 aa9.87□□□□□ -0.83
HDAC3-209ENST00000486618 DISP2A7MBM2 1401 aa9.87□□□□□ -0.83
HDAC3-209ENST00000486618 ANKARQ7Z5J8 1434 aa9.87□□□□□ -0.83
HDAC3-209ENST00000486618 COL14A1Q05707 1796 aaKnown RBP9.86□□□□□ -0.83
HDAC3-209ENST00000486618 SAFB2Q14151 953 aaKnown RBP eCLIP9.86□□□□□ -0.83
HDAC3-209ENST00000486618 FAM182BQ5T319 152 aa9.86□□□□□ -0.83
HDAC3-209ENST00000486618 FAM196AQ6ZSG2 479 aa9.86□□□□□ -0.83
HDAC3-209ENST00000486618 NRAPQ86VF7 1730 aa9.86□□□□□ -0.83
HDAC3-209ENST00000486618 PRAM1Q96QH2 718 aa9.86□□□□□ -0.83
HDAC3-209ENST00000486618 TSR3Q9UJK0 312 aaKnown RBP9.86□□□□□ -0.83
HDAC3-209ENST00000486618 EZH2Q15910 746 aaKnown RBP9.85□□□□□ -0.83
HDAC3-209ENST00000486618 MPHOSPH9Q99550 1183 aa9.85□□□□□ -0.83
HDAC3-209ENST00000486618 PRDM11Q9NQV5 511 aa9.85□□□□□ -0.83
HDAC3-209ENST00000486618 HPS5Q9UPZ3 1129 aa9.85□□□□□ -0.83
HDAC3-209ENST00000486618 EIF3AQ14152 1382 aaKnown RBP9.85□□□□□ -0.83
HDAC3-209ENST00000486618 PARD3Q8TEW0 1356 aa9.85□□□□□ -0.83
HDAC3-209ENST00000486618 TRIM37O94972 964 aa9.84□□□□□ -0.83
HDAC3-209ENST00000486618 HMGB1P09429 215 aaKnown RBP9.84□□□□□ -0.83
HDAC3-209ENST00000486618 YY1P25490 414 aa9.84□□□□□ -0.83
HDAC3-209ENST00000486618 NBPF8Q3BBV2 869 aa9.84□□□□□ -0.83
HDAC3-209ENST00000486618 CFAP70Q5T0N1 1121 aa9.84□□□□□ -0.83
HDAC3-209ENST00000486618 NBPF14Q5TI25 921 aa9.84□□□□□ -0.83
HDAC3-209ENST00000486618 NYAP1Q6ZVC0 841 aa9.84□□□□□ -0.83
HDAC3-209ENST00000486618 CAMKK2Q96RR4 588 aa9.84□□□□□ -0.83
HDAC3-209ENST00000486618 ADGRB2O60241 1585 aa9.84□□□□□ -0.83
HDAC3-209ENST00000486618 APBA3O96018 575 aa9.83□□□□□ -0.84
HDAC3-209ENST00000486618 NGDNQ8NEJ9 315 aaKnown RBP9.83□□□□□ -0.84
HDAC3-209ENST00000486618 SPATA31A1Q5TZJ5 1347 aa9.82□□□□□ -0.84
HDAC3-209ENST00000486618 ACIN1Q9UKV3 1341 aaKnown RBP9.82□□□□□ -0.84
HDAC3-209ENST00000486618 DLC1Q96QB1 1528 aa9.82□□□□□ -0.84
HDAC3-209ENST00000486618 TNS1Q9HBL0 1735 aaKnown RBP9.82□□□□□ -0.84
HDAC3-209ENST00000486618 TRPM3Q9HCF6 1732 aaPredicted RBP9.82□□□□□ -0.84
HDAC3-209ENST00000486618 RBM26Q5T8P6 1007 aaKnown RBP9.82□□□□□ -0.84
HDAC3-209ENST00000486618 ALS2Q96Q42 1657 aa9.82□□□□□ -0.84
HDAC3-209ENST00000486618 THSD7AQ9UPZ6 1657 aa9.82□□□□□ -0.84
HDAC3-209ENST00000486618 PDE3BQ13370 1112 aa9.81□□□□□ -0.84
HDAC3-209ENST00000486618 IFFO2Q5TF58 517 aa9.81□□□□□ -0.84
HDAC3-209ENST00000486618 EYA1Q99502 592 aa9.81□□□□□ -0.84
HDAC3-209ENST00000486618 PPP1R1BQ9UD71 204 aaPredicted RBP9.81□□□□□ -0.84
HDAC3-209ENST00000486618 FCHSD2O94868 740 aa9.8□□□□□ -0.84
HDAC3-209ENST00000486618 EVA1CP58658 441 aa9.8□□□□□ -0.84
HDAC3-209ENST00000486618 PPP4CP60510 307 aa9.8□□□□□ -0.84
HDAC3-209ENST00000486618 SMYD5Q6GMV2 418 aa9.8□□□□□ -0.84
HDAC3-209ENST00000486618 HIRIP3Q9BW71 556 aaPredicted RBP9.8□□□□□ -0.84
HDAC3-209ENST00000486618 SPON1Q9HCB6 807 aa9.8□□□□□ -0.84
HDAC3-209ENST00000486618 STRN4Q9NRL3 753 aa9.8□□□□□ -0.84
HDAC3-209ENST00000486618 MINK1Q8N4C8 1332 aaPredicted RBP9.8□□□□□ -0.84
HDAC3-209ENST00000486618 C11orf95C9JLR9 678 aaPredicted RBP9.79□□□□□ -0.84
HDAC3-209ENST00000486618 WASLO00401 505 aaPredicted RBP9.79□□□□□ -0.84
HDAC3-209ENST00000486618 ITGBL1O95965 494 aaPredicted RBP9.79□□□□□ -0.84
HDAC3-209ENST00000486618 BARGINQ6ZT62 677 aa9.79□□□□□ -0.84
HDAC3-209ENST00000486618 TRAK1Q9UPV9 953 aa9.79□□□□□ -0.84
HDAC3-209ENST00000486618 KIAA0232Q92628 1395 aa9.78□□□□□ -0.84
HDAC3-209ENST00000486618 TULP4Q9NRJ4 1543 aa9.78□□□□□ -0.84
HDAC3-209ENST00000486618 RNF40O75150 1001 aa9.78□□□□□ -0.84
HDAC3-209ENST00000486618 CHRNA2Q15822 529 aa9.78□□□□□ -0.84
HDAC3-209ENST00000486618 SWT1Q5T5J6 900 aaKnown RBP9.78□□□□□ -0.84
HDAC3-209ENST00000486618 USP35Q9P2H5 1018 aa9.78□□□□□ -0.84
HDAC3-209ENST00000486618 ADGRG1Q9Y653 693 aa9.78□□□□□ -0.84
HDAC3-209ENST00000486618 PRR36Q9H6K5 1346 aa9.78□□□□□ -0.84
HDAC3-209ENST00000486618 CRYBG1Q9Y4K1 1723 aa9.77□□□□□ -0.85
HDAC3-209ENST00000486618 KCNQ2O43526 872 aa9.77□□□□□ -0.85
HDAC3-209ENST00000486618 ZC3H6P61129 1189 aaKnown RBP9.77□□□□□ -0.85
HDAC3-209ENST00000486618 FAM161AQ3B820 660 aa9.77□□□□□ -0.85
HDAC3-209ENST00000486618 NINLQ9Y2I6 1382 aa9.76□□□□□ -0.85
HDAC3-209ENST00000486618 CDK11BP21127 795 aaKnown RBP9.76□□□□□ -0.85
HDAC3-209ENST00000486618 HIC1Q14526 733 aa9.76□□□□□ -0.85
HDAC3-209ENST00000486618 TCP11L2Q8N4U5 519 aa9.76□□□□□ -0.85
HDAC3-209ENST00000486618 THRAP3Q9Y2W1 955 aaKnown RBP9.76□□□□□ -0.85
HDAC3-209ENST00000486618 RREB1Q92766 1687 aa9.76□□□□□ -0.85
HDAC3-209ENST00000486618 ATP7BP35670 1465 aa9.75□□□□□ -0.85
HDAC3-209ENST00000486618 GPR37O15354 613 aa9.75□□□□□ -0.85
HDAC3-209ENST00000486618 PDIA4P13667 645 aaKnown RBP9.75□□□□□ -0.85
HDAC3-209ENST00000486618 RBM46Q8TBY0 533 aaKnown RBP9.75□□□□□ -0.85
HDAC3-209ENST00000486618 NUDT16Q96DE0 195 aaKnown RBP9.75□□□□□ -0.85
HDAC3-209ENST00000486618 ITSN1Q15811 1721 aa9.75□□□□□ -0.85
HDAC3-209ENST00000486618 NUP188Q5SRE5 1749 aa9.75□□□□□ -0.85
HDAC3-209ENST00000486618 SSH2Q76I76 1423 aa9.74□□□□□ -0.85
HDAC3-209ENST00000486618 DNAJB2P25686 324 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms