RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 ASAP1Q9ULH1 1129 aa17.31■□□□□ 0.36
CHMP3-208ENST00000486404 MRC1P22897 1456 aa17.31■□□□□ 0.36
CHMP3-208ENST00000486404 ADAMTS7Q9UKP4 1686 aa17.3■□□□□ 0.36
CHMP3-208ENST00000486404 POLD1P28340 1107 aa17.3■□□□□ 0.36
CHMP3-208ENST00000486404 PTGER2P43116 358 aa17.3■□□□□ 0.36
CHMP3-208ENST00000486404 AKAP4Q5JQC9 854 aa17.3■□□□□ 0.36
CHMP3-208ENST00000486404 SLC16A10Q8TF71 515 aa17.3■□□□□ 0.36
CHMP3-208ENST00000486404 PPP2R1AP30153 589 aa17.29■□□□□ 0.36
CHMP3-208ENST00000486404 NUDCQ9Y266 331 aa17.29■□□□□ 0.36
CHMP3-208ENST00000486404 TJP1Q07157 1748 aa17.29■□□□□ 0.36
CHMP3-208ENST00000486404 CICQ96RK0 1608 aaPredicted RBP17.29■□□□□ 0.36
CHMP3-208ENST00000486404 ATP6V1AP38606 617 aa17.28■□□□□ 0.36
CHMP3-208ENST00000486404 FLAD1Q8NFF5 587 aa17.28■□□□□ 0.36
CHMP3-208ENST00000486404 ATG3Q9NT62 314 aa17.28■□□□□ 0.36
CHMP3-208ENST00000486404 DCAF8L1A6NGE4 600 aa17.27■□□□□ 0.36
CHMP3-208ENST00000486404 RBM42Q9BTD8 480 aaKnown RBP17.27■□□□□ 0.36
CHMP3-208ENST00000486404 PHF14O94880 888 aa17.26■□□□□ 0.35
CHMP3-208ENST00000486404 LINC00116Q8NCU8 138 aa17.26■□□□□ 0.35
CHMP3-208ENST00000486404 ARXQ96QS3 562 aa17.26■□□□□ 0.35
CHMP3-208ENST00000486404 MAP3K5Q99683 1374 aa17.26■□□□□ 0.35
CHMP3-208ENST00000486404 SIPA1L3O60292 1781 aaPredicted RBP17.25■□□□□ 0.35
CHMP3-208ENST00000486404 C4AP0C0L4 1744 aa17.25■□□□□ 0.35
CHMP3-208ENST00000486404 MTHFSDQ2M296 383 aaKnown RBP17.25■□□□□ 0.35
CHMP3-208ENST00000486404 COL23A1Q86Y22 540 aaPredicted RBP17.25■□□□□ 0.35
CHMP3-208ENST00000486404 KLHL34Q8N239 644 aa17.25■□□□□ 0.35
CHMP3-208ENST00000486404 GAS2L2Q8NHY3 880 aa17.25■□□□□ 0.35
CHMP3-208ENST00000486404 UBR2Q8IWV8 1755 aa17.25■□□□□ 0.35
CHMP3-208ENST00000486404 GNPATO15228 680 aa17.24■□□□□ 0.35
CHMP3-208ENST00000486404 ITPK1Q13572 414 aa17.24■□□□□ 0.35
CHMP3-208ENST00000486404 NFATC2IPQ8NCF5 419 aa17.24■□□□□ 0.35
CHMP3-208ENST00000486404 SGIP1Q9BQI5 828 aa17.24■□□□□ 0.35
CHMP3-208ENST00000486404 FHDC1Q9C0D6 1143 aaPredicted RBP17.24■□□□□ 0.35
CHMP3-208ENST00000486404 U2AF1L5P0DN76 240 aaPredicted RBP17.23■□□□□ 0.35
CHMP3-208ENST00000486404 PRKAR2BP31323 418 aa17.23■□□□□ 0.35
CHMP3-208ENST00000486404 U2AF1Q01081 240 aaKnown RBP eCLIP17.23■□□□□ 0.35
CHMP3-208ENST00000486404 MSL1Q68DK7 614 aa17.23■□□□□ 0.35
CHMP3-208ENST00000486404 SLC52A2Q9HAB3 445 aa17.23■□□□□ 0.35
CHMP3-208ENST00000486404 RNMTO43148 476 aaKnown RBP17.22■□□□□ 0.35
CHMP3-208ENST00000486404 PTCD1O75127 700 aaKnown RBP17.22■□□□□ 0.35
CHMP3-208ENST00000486404 SSFA2P28290 1259 aa17.22■□□□□ 0.35
CHMP3-208ENST00000486404 MYH14Q7Z406 1995 aaKnown RBP17.21■□□□□ 0.35
CHMP3-208ENST00000486404 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.21■□□□□ 0.35
CHMP3-208ENST00000486404 DLG5Q8TDM6 1919 aa17.2■□□□□ 0.34
CHMP3-208ENST00000486404 GNAT3A8MTJ3 354 aa17.2■□□□□ 0.34
CHMP3-208ENST00000486404 ZEB1P37275 1124 aaPredicted RBP17.2■□□□□ 0.34
CHMP3-208ENST00000486404 RSPH6AQ9H0K4 717 aa17.2■□□□□ 0.34
CHMP3-208ENST00000486404 LGR6Q9HBX8 967 aa17.2■□□□□ 0.34
CHMP3-208ENST00000486404 KCPQ6ZWJ8 1503 aa17.2■□□□□ 0.34
CHMP3-208ENST00000486404 CNTNAP4Q9C0A0 1308 aa17.2■□□□□ 0.34
CHMP3-208ENST00000486404 TEFQ10587 303 aa17.19■□□□□ 0.34
CHMP3-208ENST00000486404 DDX10Q13206 875 aaKnown RBP17.19■□□□□ 0.34
CHMP3-208ENST00000486404 SYT17Q9BSW7 474 aa17.19■□□□□ 0.34
CHMP3-208ENST00000486404 NEFMP07197 916 aa17.18■□□□□ 0.34
CHMP3-208ENST00000486404 TTC5Q8N0Z6 440 aa17.18■□□□□ 0.34
CHMP3-208ENST00000486404 SLC4A9Q96Q91 983 aa17.18■□□□□ 0.34
CHMP3-208ENST00000486404 RTCBQ9Y3I0 505 aaKnown RBP17.18■□□□□ 0.34
CHMP3-208ENST00000486404 RALBP1Q15311 655 aa17.17■□□□□ 0.34
CHMP3-208ENST00000486404 AMIGO3Q86WK7 504 aa17.17■□□□□ 0.34
CHMP3-208ENST00000486404 SMIM5Q71RC9 77 aa17.16■□□□□ 0.34
CHMP3-208ENST00000486404 FCHSD2O94868 740 aa17.15■□□□□ 0.34
CHMP3-208ENST00000486404 SLC39A6Q13433 755 aa17.15■□□□□ 0.34
CHMP3-208ENST00000486404 RC3H1Q5TC82 1133 aaKnown RBP17.15■□□□□ 0.34
CHMP3-208ENST00000486404 PHACTR3Q96KR7 559 aa17.15■□□□□ 0.34
CHMP3-208ENST00000486404 CHD4Q14839 1912 aa17.15■□□□□ 0.34
CHMP3-208ENST00000486404 CRKLP46109 303 aaKnown RBP17.14■□□□□ 0.33
CHMP3-208ENST00000486404 TRAPPC3LQ5T215 181 aa17.14■□□□□ 0.33
CHMP3-208ENST00000486404 RTF1Q92541 710 aaKnown RBP17.14■□□□□ 0.33
CHMP3-208ENST00000486404 RPS6KA4O75676 772 aa17.12■□□□□ 0.33
CHMP3-208ENST00000486404 RFC4P35249 363 aa17.12■□□□□ 0.33
CHMP3-208ENST00000486404 DNAJC10Q8IXB1 793 aa17.12■□□□□ 0.33
CHMP3-208ENST00000486404 PELP1Q8IZL8 1130 aaKnown RBP17.12■□□□□ 0.33
CHMP3-208ENST00000486404 MYBBP1AQ9BQG0 1328 aaKnown RBP17.12■□□□□ 0.33
CHMP3-208ENST00000486404 MAPK8IP3Q9UPT6 1336 aa17.12■□□□□ 0.33
CHMP3-208ENST00000486404 CEMIPQ8WUJ3 1361 aa17.12■□□□□ 0.33
CHMP3-208ENST00000486404 LAMB4A4D0S4 1761 aa17.1■□□□□ 0.33
CHMP3-208ENST00000486404 KIF13BQ9NQT8 1826 aa17.1■□□□□ 0.33
CHMP3-208ENST00000486404 VSIG10Q8N0Z9 540 aa17.1■□□□□ 0.33
CHMP3-208ENST00000486404 IL17REQ8NFR9 667 aa17.1■□□□□ 0.33
CHMP3-208ENST00000486404 PNNQ9H307 717 aaKnown RBP17.1■□□□□ 0.33
CHMP3-208ENST00000486404 CCDC87Q9NVE4 849 aa17.1■□□□□ 0.33
CHMP3-208ENST00000486404 GPR162Q16538 588 aa17.09■□□□□ 0.33
CHMP3-208ENST00000486404 NLGN2Q8NFZ4 835 aa17.09■□□□□ 0.33
CHMP3-208ENST00000486404 ARHGEF1Q92888 912 aaKnown RBP17.09■□□□□ 0.33
CHMP3-208ENST00000486404 KDM3BQ7LBC6 1761 aa17.08■□□□□ 0.33
CHMP3-208ENST00000486404 SCN7AQ01118 1682 aa17.08■□□□□ 0.32
CHMP3-208ENST00000486404 COL15A1P39059 1388 aa17.08■□□□□ 0.32
CHMP3-208ENST00000486404 HEG1Q9ULI3 1381 aa17.08■□□□□ 0.32
CHMP3-208ENST00000486404 BTBD11A6QL63 1104 aa17.08■□□□□ 0.32
CHMP3-208ENST00000486404 MMP10P09238 476 aa17.08■□□□□ 0.32
CHMP3-208ENST00000486404 ZNF790Q6PG37 636 aa17.08■□□□□ 0.32
CHMP3-208ENST00000486404 MCM10Q7L590 875 aa17.08■□□□□ 0.32
CHMP3-208ENST00000486404 CD2APQ9Y5K6 639 aa17.08■□□□□ 0.32
CHMP3-208ENST00000486404 NLGN1Q8N2Q7 840 aa17.07■□□□□ 0.32
CHMP3-208ENST00000486404 FMNL2Q96PY5 1086 aa17.07■□□□□ 0.32
CHMP3-208ENST00000486404 SOS1Q07889 1333 aaPredicted RBP17.06■□□□□ 0.32
CHMP3-208ENST00000486404 USP42Q9H9J4 1324 aaKnown RBP17.06■□□□□ 0.32
CHMP3-208ENST00000486404 HTATSF1O43719 755 aaKnown RBP17.06■□□□□ 0.32
CHMP3-208ENST00000486404 STARD3NLO95772 234 aa17.06■□□□□ 0.32
CHMP3-208ENST00000486404 CYP19A1P11511 503 aaPredicted RBP17.06■□□□□ 0.32
CHMP3-208ENST00000486404 YY1P25490 414 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms