RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 ITPK1Q13572 414 aa19.14■□□□□ 0.65
SQSTM1-208ENST00000485412 ATP6V1AP38606 617 aa19.13■□□□□ 0.65
SQSTM1-208ENST00000485412 COL5A3P25940 1745 aaPredicted RBP19.12■□□□□ 0.65
SQSTM1-208ENST00000485412 CICQ96RK0 1608 aaPredicted RBP19.12■□□□□ 0.65
SQSTM1-208ENST00000485412 TIMELESSQ9UNS1 1208 aa19.12■□□□□ 0.65
SQSTM1-208ENST00000485412 N4BP2Q86UW6 1770 aaPredicted RBP19.11■□□□□ 0.65
SQSTM1-208ENST00000485412 HSPA5P11021 654 aaKnown RBP19.11■□□□□ 0.65
SQSTM1-208ENST00000485412 KIF13BQ9NQT8 1826 aa19.11■□□□□ 0.65
SQSTM1-208ENST00000485412 MMP10P09238 476 aa19.1■□□□□ 0.65
SQSTM1-208ENST00000485412 IFNL2Q8IZJ0 200 aa19.1■□□□□ 0.65
SQSTM1-208ENST00000485412 ATG3Q9NT62 314 aa19.1■□□□□ 0.65
SQSTM1-208ENST00000485412 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.1■□□□□ 0.65
SQSTM1-208ENST00000485412 KIAA1551Q9HCM1 1747 aa19.1■□□□□ 0.65
SQSTM1-208ENST00000485412 KDRP35968 1356 aa19.09■□□□□ 0.65
SQSTM1-208ENST00000485412 KIF3CO14782 793 aa19.09■□□□□ 0.65
SQSTM1-208ENST00000485412 PANK3Q9H999 370 aa19.09■□□□□ 0.65
SQSTM1-208ENST00000485412 MYH14Q7Z406 1995 aaKnown RBP19.09■□□□□ 0.65
SQSTM1-208ENST00000485412 KDM6AO15550 1401 aaPredicted RBP19.08■□□□□ 0.65
SQSTM1-208ENST00000485412 CLSPNQ9HAW4 1339 aa19.08■□□□□ 0.65
SQSTM1-208ENST00000485412 SLC4A9Q96Q91 983 aa19.08■□□□□ 0.64
SQSTM1-208ENST00000485412 PXDNLA1KZ92 1463 aa19.08■□□□□ 0.64
SQSTM1-208ENST00000485412 C4AP0C0L4 1744 aa19.08■□□□□ 0.64
SQSTM1-208ENST00000485412 BCS1LQ9Y276 419 aa19.07■□□□□ 0.64
SQSTM1-208ENST00000485412 ZNF831Q5JPB2 1677 aa19.07■□□□□ 0.64
SQSTM1-208ENST00000485412 TRAPPC3LQ5T215 181 aa19.06■□□□□ 0.64
SQSTM1-208ENST00000485412 AEBP1Q8IUX7 1158 aa19.06■□□□□ 0.64
SQSTM1-208ENST00000485412 RTCBQ9Y3I0 505 aaKnown RBP19.06■□□□□ 0.64
SQSTM1-208ENST00000485412 APLP1P51693 650 aa19.05■□□□□ 0.64
SQSTM1-208ENST00000485412 TGFB2P61812 414 aa19.05■□□□□ 0.64
SQSTM1-208ENST00000485412 EIF4G2P78344 907 aaKnown RBP eCLIP19.05■□□□□ 0.64
SQSTM1-208ENST00000485412 VIRMAQ69YN4 1812 aaKnown RBP19.04■□□□□ 0.64
SQSTM1-208ENST00000485412 NLGN1Q8N2Q7 840 aa19.04■□□□□ 0.64
SQSTM1-208ENST00000485412 RBM42Q9BTD8 480 aaKnown RBP19.04■□□□□ 0.64
SQSTM1-208ENST00000485412 C10orf71Q711Q0 1435 aa19.03■□□□□ 0.64
SQSTM1-208ENST00000485412 A0A0G2JLW4 131 aa19.03■□□□□ 0.64
SQSTM1-208ENST00000485412 ARHGAP27Q6ZUM4 889 aa19.03■□□□□ 0.64
SQSTM1-208ENST00000485412 CCDC87Q9NVE4 849 aa19.03■□□□□ 0.64
SQSTM1-208ENST00000485412 TJP1Q07157 1748 aa19.03■□□□□ 0.64
SQSTM1-208ENST00000485412 SCN11AQ9UI33 1791 aa19.02■□□□□ 0.64
SQSTM1-208ENST00000485412 BRCA1P38398 1863 aaKnown RBP19.02■□□□□ 0.64
SQSTM1-208ENST00000485412 TOMM70O94826 608 aa19.01■□□□□ 0.63
SQSTM1-208ENST00000485412 FCHSD2O94868 740 aa19.01■□□□□ 0.63
SQSTM1-208ENST00000485412 ADRA2BP18089 450 aa19.01■□□□□ 0.63
SQSTM1-208ENST00000485412 PARP3Q9Y6F1 533 aa19.01■□□□□ 0.63
SQSTM1-208ENST00000485412 DPEP1P16444 411 aa19■□□□□ 0.63
SQSTM1-208ENST00000485412 RFC4P35249 363 aa19■□□□□ 0.63
SQSTM1-208ENST00000485412 ZNF530Q6P9A1 599 aaPredicted RBP19■□□□□ 0.63
SQSTM1-208ENST00000485412 ARHGEF1Q92888 912 aaKnown RBP19■□□□□ 0.63
SQSTM1-208ENST00000485412 PLEKHG2Q9H7P9 1386 aa19■□□□□ 0.63
SQSTM1-208ENST00000485412 ARFGEF1Q9Y6D6 1849 aa19■□□□□ 0.63
SQSTM1-208ENST00000485412 ERVV-2B6SEH9 535 aa18.99■□□□□ 0.63
SQSTM1-208ENST00000485412 HSP90AB1P08238 724 aaKnown RBP18.99■□□□□ 0.63
SQSTM1-208ENST00000485412 RC3H1Q5TC82 1133 aaKnown RBP18.99■□□□□ 0.63
SQSTM1-208ENST00000485412 CNTNAP4Q9C0A0 1308 aa18.99■□□□□ 0.63
SQSTM1-208ENST00000485412 GYS1P13807 737 aa18.98■□□□□ 0.63
SQSTM1-208ENST00000485412 MORC1Q86VD1 984 aa18.98■□□□□ 0.63
SQSTM1-208ENST00000485412 DCAF5Q96JK2 942 aa18.98■□□□□ 0.63
SQSTM1-208ENST00000485412 NMRK2Q9NPI5 230 aa18.98■□□□□ 0.63
SQSTM1-208ENST00000485412 WDR90Q96KV7 1748 aa18.97■□□□□ 0.63
SQSTM1-208ENST00000485412 RPS6KA4O75676 772 aa18.97■□□□□ 0.63
SQSTM1-208ENST00000485412 PLEKHO1Q53GL0 409 aaPredicted RBP18.97■□□□□ 0.63
SQSTM1-208ENST00000485412 C16orf71Q8IYS4 520 aaPredicted RBP18.97■□□□□ 0.63
SQSTM1-208ENST00000485412 ADAMTS7Q9UKP4 1686 aa18.97■□□□□ 0.63
SQSTM1-208ENST00000485412 CABP4P57796 275 aa18.96■□□□□ 0.63
SQSTM1-208ENST00000485412 PTCD1O75127 700 aaKnown RBP18.95■□□□□ 0.62
SQSTM1-208ENST00000485412 C9orf131Q5VYM1 1079 aa18.95■□□□□ 0.62
SQSTM1-208ENST00000485412 SULT6B1Q6IMI4 303 aa18.95■□□□□ 0.62
SQSTM1-208ENST00000485412 IL13P35225 146 aa18.94■□□□□ 0.62
SQSTM1-208ENST00000485412 CCER1Q8TC90 406 aaPredicted RBP18.94■□□□□ 0.62
SQSTM1-208ENST00000485412 MTHFSP49914 203 aa18.93■□□□□ 0.62
SQSTM1-208ENST00000485412 AMOTQ4VCS5 1084 aa18.93■□□□□ 0.62
SQSTM1-208ENST00000485412 AMER1Q5JTC6 1135 aaPredicted RBP18.93■□□□□ 0.62
SQSTM1-208ENST00000485412 DNAJC5GQ8N7S2 189 aa18.93■□□□□ 0.62
SQSTM1-208ENST00000485412 NFATC2IPQ8NCF5 419 aa18.93■□□□□ 0.62
SQSTM1-208ENST00000485412 RBM46Q8TBY0 533 aaKnown RBP18.93■□□□□ 0.62
SQSTM1-208ENST00000485412 PIM2Q9P1W9 311 aa18.93■□□□□ 0.62
SQSTM1-208ENST00000485412 SRP68Q9UHB9 627 aaKnown RBP18.92■□□□□ 0.62
SQSTM1-208ENST00000485412 DALRD3Q5D0E6 543 aaKnown RBP18.91■□□□□ 0.62
SQSTM1-208ENST00000485412 C1orf141Q5JVX7 400 aa18.91■□□□□ 0.62
SQSTM1-208ENST00000485412 KNSTRNQ9Y448 316 aa18.91■□□□□ 0.62
SQSTM1-208ENST00000485412 KIF7Q2M1P5 1343 aa18.91■□□□□ 0.62
SQSTM1-208ENST00000485412 KCNA3P22001 575 aa18.9■□□□□ 0.62
SQSTM1-208ENST00000485412 CRKLP46109 303 aaKnown RBP18.9■□□□□ 0.62
SQSTM1-208ENST00000485412 KDM2BQ8NHM5 1336 aa18.9■□□□□ 0.62
SQSTM1-208ENST00000485412 KCPQ6ZWJ8 1503 aa18.9■□□□□ 0.62
SQSTM1-208ENST00000485412 SBF1O95248 1867 aa18.89■□□□□ 0.61
SQSTM1-208ENST00000485412 RNF181Q9P0P0 153 aa18.89■□□□□ 0.61
SQSTM1-208ENST00000485412 MRC1P22897 1456 aa18.89■□□□□ 0.61
SQSTM1-208ENST00000485412 TNRC6CQ9HCJ0 1690 aaKnown RBP18.89■□□□□ 0.61
SQSTM1-208ENST00000485412 FKBP8Q14318 412 aa18.88■□□□□ 0.61
SQSTM1-208ENST00000485412 LGR6Q9HBX8 967 aa18.88■□□□□ 0.61
SQSTM1-208ENST00000485412 USP42Q9H9J4 1324 aaKnown RBP18.88■□□□□ 0.61
SQSTM1-208ENST00000485412 HMOX1P09601 288 aa18.87■□□□□ 0.61
SQSTM1-208ENST00000485412 AFDNP55196 1824 aaKnown RBP18.87■□□□□ 0.61
SQSTM1-208ENST00000485412 DDR1Q08345 913 aa18.87■□□□□ 0.61
SQSTM1-208ENST00000485412 FSTL1Q12841 308 aa18.87■□□□□ 0.61
SQSTM1-208ENST00000485412 UBR2Q8IWV8 1755 aa18.86■□□□□ 0.61
SQSTM1-208ENST00000485412 HTRA3P83110 453 aa18.86■□□□□ 0.61
SQSTM1-208ENST00000485412 INTS5Q6P9B9 1019 aaKnown RBP18.86■□□□□ 0.61
SQSTM1-208ENST00000485412 KLRG1Q96E93 195 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms