RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 ATG3Q9NT62 314 aa22.33■■□□□ 1.17
TRIM54-203ENST00000485306 HMOX1P09601 288 aa22.32■■□□□ 1.16
TRIM54-203ENST00000485306 ADRA2BP18089 450 aa22.31■■□□□ 1.16
TRIM54-203ENST00000485306 AKAP4Q5JQC9 854 aa22.31■■□□□ 1.16
TRIM54-203ENST00000485306 C4BP0C0L5 1744 aa22.31■■□□□ 1.16
TRIM54-203ENST00000485306 COL3A1P02461 1466 aaPredicted RBP22.29■■□□□ 1.16
TRIM54-203ENST00000485306 CFAP53Q96M91 514 aa22.29■■□□□ 1.16
TRIM54-203ENST00000485306 RBM42Q9BTD8 480 aaKnown RBP22.29■■□□□ 1.16
TRIM54-203ENST00000485306 KDM6AO15550 1401 aaPredicted RBP22.29■■□□□ 1.16
TRIM54-203ENST00000485306 U2SURPO15042 1029 aaKnown RBP22.28■■□□□ 1.16
TRIM54-203ENST00000485306 NFATC2IPQ8NCF5 419 aa22.28■■□□□ 1.16
TRIM54-203ENST00000485306 COL24A1Q17RW2 1714 aa22.28■■□□□ 1.16
TRIM54-203ENST00000485306 LINC00116Q8NCU8 138 aa22.27■■□□□ 1.16
TRIM54-203ENST00000485306 MAP3K5Q99683 1374 aa22.26■■□□□ 1.15
TRIM54-203ENST00000485306 SSFA2P28290 1259 aa22.26■■□□□ 1.15
TRIM54-203ENST00000485306 ITPK1Q13572 414 aa22.26■■□□□ 1.15
TRIM54-203ENST00000485306 KLHL34Q8N239 644 aa22.26■■□□□ 1.15
TRIM54-203ENST00000485306 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.25■■□□□ 1.15
TRIM54-203ENST00000485306 PHF14O94880 888 aa22.25■■□□□ 1.15
TRIM54-203ENST00000485306 PPP2R1AP30153 589 aa22.25■■□□□ 1.15
TRIM54-203ENST00000485306 GNPATO15228 680 aa22.24■■□□□ 1.15
TRIM54-203ENST00000485306 UBR3Q6ZT12 1888 aa22.24■■□□□ 1.15
TRIM54-203ENST00000485306 SCN11AQ9UI33 1791 aa22.23■■□□□ 1.15
TRIM54-203ENST00000485306 MTHFSDQ2M296 383 aaKnown RBP22.23■■□□□ 1.15
TRIM54-203ENST00000485306 MSL1Q68DK7 614 aa22.23■■□□□ 1.15
TRIM54-203ENST00000485306 NUDCQ9Y266 331 aa22.23■■□□□ 1.15
TRIM54-203ENST00000485306 ZNF831Q5JPB2 1677 aa22.22■■□□□ 1.15
TRIM54-203ENST00000485306 PTCD1O75127 700 aaKnown RBP22.21■■□□□ 1.15
TRIM54-203ENST00000485306 RC3H1Q5TC82 1133 aaKnown RBP22.21■■□□□ 1.15
TRIM54-203ENST00000485306 SLC52A2Q9HAB3 445 aa22.21■■□□□ 1.15
TRIM54-203ENST00000485306 LGR6Q9HBX8 967 aa22.21■■□□□ 1.15
TRIM54-203ENST00000485306 RTCBQ9Y3I0 505 aaKnown RBP22.21■■□□□ 1.15
TRIM54-203ENST00000485306 RNMTO43148 476 aaKnown RBP22.2■■□□□ 1.14
TRIM54-203ENST00000485306 YY1P25490 414 aa22.2■■□□□ 1.14
TRIM54-203ENST00000485306 SLC4A9Q96Q91 983 aa22.2■■□□□ 1.14
TRIM54-203ENST00000485306 TRAPPC3LQ5T215 181 aa22.19■■□□□ 1.14
TRIM54-203ENST00000485306 AMIGO3Q86WK7 504 aa22.19■■□□□ 1.14
TRIM54-203ENST00000485306 GAS2L2Q8NHY3 880 aa22.19■■□□□ 1.14
TRIM54-203ENST00000485306 SMIM5Q71RC9 77 aa22.18■■□□□ 1.14
TRIM54-203ENST00000485306 CNTNAP4Q9C0A0 1308 aa22.17■■□□□ 1.14
TRIM54-203ENST00000485306 GPR162Q16538 588 aa22.17■■□□□ 1.14
TRIM54-203ENST00000485306 VIRMAQ69YN4 1812 aaKnown RBP22.16■■□□□ 1.14
TRIM54-203ENST00000485306 GNAT3A8MTJ3 354 aa22.15■■□□□ 1.14
TRIM54-203ENST00000485306 RPS6KA4O75676 772 aa22.15■■□□□ 1.14
TRIM54-203ENST00000485306 DIEXFQ68CQ4 756 aaKnown RBP22.15■■□□□ 1.14
TRIM54-203ENST00000485306 U2AF1L5P0DN76 240 aaPredicted RBP22.14■■□□□ 1.13
TRIM54-203ENST00000485306 U2AF1Q01081 240 aaKnown RBP eCLIP22.14■■□□□ 1.13
TRIM54-203ENST00000485306 CD2APQ9Y5K6 639 aa22.14■■□□□ 1.13
TRIM54-203ENST00000485306 COL5A3P25940 1745 aaPredicted RBP22.14■■□□□ 1.13
TRIM54-203ENST00000485306 RFC4P35249 363 aa22.13■■□□□ 1.13
TRIM54-203ENST00000485306 PRKAR2BP31323 418 aa22.12■■□□□ 1.13
TRIM54-203ENST00000485306 CRKLP46109 303 aaKnown RBP22.12■■□□□ 1.13
TRIM54-203ENST00000485306 TEFQ10587 303 aa22.12■■□□□ 1.13
TRIM54-203ENST00000485306 PELP1Q8IZL8 1130 aaKnown RBP22.12■■□□□ 1.13
TRIM54-203ENST00000485306 NLGN1Q8N2Q7 840 aa22.12■■□□□ 1.13
TRIM54-203ENST00000485306 NLGN2Q8NFZ4 835 aa22.12■■□□□ 1.13
TRIM54-203ENST00000485306 ARHGEF1Q92888 912 aaKnown RBP22.12■■□□□ 1.13
TRIM54-203ENST00000485306 MRC1P22897 1456 aa22.11■■□□□ 1.13
TRIM54-203ENST00000485306 FCHSD2O94868 740 aa22.11■■□□□ 1.13
TRIM54-203ENST00000485306 SLC39A6Q13433 755 aa22.11■■□□□ 1.13
TRIM54-203ENST00000485306 RALBP1Q15311 655 aa22.11■■□□□ 1.13
TRIM54-203ENST00000485306 RSPH6AQ9H0K4 717 aa22.11■■□□□ 1.13
TRIM54-203ENST00000485306 ADAMTS7Q9UKP4 1686 aa22.11■■□□□ 1.13
TRIM54-203ENST00000485306 ANP32CO43423 234 aa22.1■■□□□ 1.13
TRIM54-203ENST00000485306 TTC5Q8N0Z6 440 aa22.1■■□□□ 1.13
TRIM54-203ENST00000485306 IL17REQ8NFR9 667 aa22.09■■□□□ 1.13
TRIM54-203ENST00000485306 PHACTR3Q96KR7 559 aa22.09■■□□□ 1.13
TRIM54-203ENST00000485306 MYH14Q7Z406 1995 aaKnown RBP22.08■■□□□ 1.13
TRIM54-203ENST00000485306 VSIG10Q8N0Z9 540 aa22.08■■□□□ 1.13
TRIM54-203ENST00000485306 NEFMP07197 916 aa22.07■■□□□ 1.12
TRIM54-203ENST00000485306 DNAJC10Q8IXB1 793 aa22.07■■□□□ 1.12
TRIM54-203ENST00000485306 PRKRIP1Q9H875 184 aaPredicted RBP22.07■■□□□ 1.12
TRIM54-203ENST00000485306 CHD4Q14839 1912 aa22.07■■□□□ 1.12
TRIM54-203ENST00000485306 CICQ96RK0 1608 aaPredicted RBP22.06■■□□□ 1.12
TRIM54-203ENST00000485306 TJP1Q07157 1748 aa22.06■■□□□ 1.12
TRIM54-203ENST00000485306 GRIN3BO60391 1043 aa22.06■■□□□ 1.12
TRIM54-203ENST00000485306 MMP10P09238 476 aa22.06■■□□□ 1.12
TRIM54-203ENST00000485306 RTF1Q92541 710 aaKnown RBP22.06■■□□□ 1.12
TRIM54-203ENST00000485306 CCDC87Q9NVE4 849 aa22.06■■□□□ 1.12
TRIM54-203ENST00000485306 INTS5Q6P9B9 1019 aaKnown RBP22.05■■□□□ 1.12
TRIM54-203ENST00000485306 CYP19A1P11511 503 aaPredicted RBP22.04■■□□□ 1.12
TRIM54-203ENST00000485306 GYS1P13807 737 aa22.04■■□□□ 1.12
TRIM54-203ENST00000485306 ZNF790Q6PG37 636 aa22.03■■□□□ 1.12
TRIM54-203ENST00000485306 PARP3Q9Y6F1 533 aa22.03■■□□□ 1.12
TRIM54-203ENST00000485306 KCPQ6ZWJ8 1503 aa22.02■■□□□ 1.12
TRIM54-203ENST00000485306 ZPR1O75312 459 aa22.02■■□□□ 1.12
TRIM54-203ENST00000485306 STARD3NLO95772 234 aa22.02■■□□□ 1.12
TRIM54-203ENST00000485306 TEX13AQ9BXU3 409 aaPredicted RBP22.02■■□□□ 1.12
TRIM54-203ENST00000485306 PNNQ9H307 717 aaKnown RBP22.02■■□□□ 1.12
TRIM54-203ENST00000485306 UTRNP46939 3433 aa22.02■■□□□ 1.12
TRIM54-203ENST00000485306 MYBBP1AQ9BQG0 1328 aaKnown RBP22.02■■□□□ 1.12
TRIM54-203ENST00000485306 CEMIPQ8WUJ3 1361 aa22.01■■□□□ 1.11
TRIM54-203ENST00000485306 BTBD11A6QL63 1104 aa22.01■■□□□ 1.11
TRIM54-203ENST00000485306 HTATSF1O43719 755 aaKnown RBP22.01■■□□□ 1.11
TRIM54-203ENST00000485306 UBR2Q8IWV8 1755 aa22■■□□□ 1.11
TRIM54-203ENST00000485306 USP42Q9H9J4 1324 aaKnown RBP22■■□□□ 1.11
TRIM54-203ENST00000485306 C4AP0C0L4 1744 aa22■■□□□ 1.11
TRIM54-203ENST00000485306 YBX3P16989 372 aaKnown RBP eCLIP21.99■■□□□ 1.11
TRIM54-203ENST00000485306 ZNF496Q96IT1 587 aaPredicted RBP21.99■■□□□ 1.11
TRIM54-203ENST00000485306 FMNL2Q96PY5 1086 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms