RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 GNPATO15228 680 aa17.96■□□□□ 0.47
HDAC6-227ENST00000485102 HSP90AB1P08238 724 aaKnown RBP17.96■□□□□ 0.47
HDAC6-227ENST00000485102 RC3H1Q5TC82 1133 aaKnown RBP17.96■□□□□ 0.47
HDAC6-227ENST00000485102 SMIM5Q71RC9 77 aa17.96■□□□□ 0.47
HDAC6-227ENST00000485102 GPBP1L1Q9HC44 474 aaPredicted RBP17.96■□□□□ 0.47
HDAC6-227ENST00000485102 KDRP35968 1356 aa17.95■□□□□ 0.46
HDAC6-227ENST00000485102 ADRA2BP18089 450 aa17.94■□□□□ 0.46
HDAC6-227ENST00000485102 NLGN1Q8N2Q7 840 aa17.94■□□□□ 0.46
HDAC6-227ENST00000485102 DCAF5Q96JK2 942 aa17.94■□□□□ 0.46
HDAC6-227ENST00000485102 TGFB2P61812 414 aa17.93■□□□□ 0.46
HDAC6-227ENST00000485102 SLC4A9Q96Q91 983 aa17.93■□□□□ 0.46
HDAC6-227ENST00000485102 RTCBQ9Y3I0 505 aaKnown RBP17.93■□□□□ 0.46
HDAC6-227ENST00000485102 KIF13BQ9NQT8 1826 aa17.93■□□□□ 0.46
HDAC6-227ENST00000485102 MMP10P09238 476 aa17.92■□□□□ 0.46
HDAC6-227ENST00000485102 AMOTQ4VCS5 1084 aa17.92■□□□□ 0.46
HDAC6-227ENST00000485102 TRAPPC3LQ5T215 181 aa17.92■□□□□ 0.46
HDAC6-227ENST00000485102 PLEKHO1Q53GL0 409 aaPredicted RBP17.91■□□□□ 0.46
HDAC6-227ENST00000485102 CNTNAP4Q9C0A0 1308 aa17.91■□□□□ 0.46
HDAC6-227ENST00000485102 CICQ96RK0 1608 aaPredicted RBP17.9■□□□□ 0.46
HDAC6-227ENST00000485102 RPS6KA4O75676 772 aa17.9■□□□□ 0.46
HDAC6-227ENST00000485102 HSPA6P17066 643 aa17.89■□□□□ 0.45
HDAC6-227ENST00000485102 TNNT2P45379 298 aaPredicted RBP17.89■□□□□ 0.45
HDAC6-227ENST00000485102 ARHGEF1Q92888 912 aaKnown RBP17.89■□□□□ 0.45
HDAC6-227ENST00000485102 PXDNLA1KZ92 1463 aa17.88■□□□□ 0.45
HDAC6-227ENST00000485102 EIF4G2P78344 907 aaKnown RBP eCLIP17.88■□□□□ 0.45
HDAC6-227ENST00000485102 PANK3Q9H999 370 aa17.88■□□□□ 0.45
HDAC6-227ENST00000485102 COL5A3P25940 1745 aaPredicted RBP17.87■□□□□ 0.45
HDAC6-227ENST00000485102 GYS1P13807 737 aa17.87■□□□□ 0.45
HDAC6-227ENST00000485102 RBM42Q9BTD8 480 aaKnown RBP17.87■□□□□ 0.45
HDAC6-227ENST00000485102 MYH14Q7Z406 1995 aaKnown RBP17.87■□□□□ 0.45
HDAC6-227ENST00000485102 KDM6AO15550 1401 aaPredicted RBP17.87■□□□□ 0.45
HDAC6-227ENST00000485102 KIAA1551Q9HCM1 1747 aa17.86■□□□□ 0.45
HDAC6-227ENST00000485102 KIF3CO14782 793 aa17.86■□□□□ 0.45
HDAC6-227ENST00000485102 CABP4P57796 275 aa17.86■□□□□ 0.45
HDAC6-227ENST00000485102 ZNF530Q6P9A1 599 aaPredicted RBP17.86■□□□□ 0.45
HDAC6-227ENST00000485102 C10orf71Q711Q0 1435 aa17.86■□□□□ 0.45
HDAC6-227ENST00000485102 RFC4P35249 363 aa17.85■□□□□ 0.45
HDAC6-227ENST00000485102 MTHFSP49914 203 aa17.85■□□□□ 0.45
HDAC6-227ENST00000485102 POLR3GLQ9BT43 218 aa17.85■□□□□ 0.45
HDAC6-227ENST00000485102 CCDC87Q9NVE4 849 aa17.85■□□□□ 0.45
HDAC6-227ENST00000485102 IFFO2Q5TF58 517 aa17.84■□□□□ 0.45
HDAC6-227ENST00000485102 ZNF526Q8TF50 670 aaPredicted RBP17.84■□□□□ 0.45
HDAC6-227ENST00000485102 WWC3Q9ULE0 1092 aa17.84■□□□□ 0.45
HDAC6-227ENST00000485102 A0A0G2JLW4 131 aa17.83■□□□□ 0.44
HDAC6-227ENST00000485102 HSPA5P11021 654 aaKnown RBP17.83■□□□□ 0.44
HDAC6-227ENST00000485102 C4AP0C0L4 1744 aa17.82■□□□□ 0.44
HDAC6-227ENST00000485102 C1orf141Q5JVX7 400 aa17.82■□□□□ 0.44
HDAC6-227ENST00000485102 MORC1Q86VD1 984 aa17.82■□□□□ 0.44
HDAC6-227ENST00000485102 AEBP1Q8IUX7 1158 aa17.82■□□□□ 0.44
HDAC6-227ENST00000485102 NFATC2IPQ8NCF5 419 aa17.82■□□□□ 0.44
HDAC6-227ENST00000485102 BCS1LQ9Y276 419 aa17.82■□□□□ 0.44
HDAC6-227ENST00000485102 PARP3Q9Y6F1 533 aa17.82■□□□□ 0.44
HDAC6-227ENST00000485102 BRCA1P38398 1863 aaKnown RBP17.82■□□□□ 0.44
HDAC6-227ENST00000485102 N4BP2Q86UW6 1770 aaPredicted RBP17.81■□□□□ 0.44
HDAC6-227ENST00000485102 DPEP1P16444 411 aa17.81■□□□□ 0.44
HDAC6-227ENST00000485102 KCNA3P22001 575 aa17.81■□□□□ 0.44
HDAC6-227ENST00000485102 IL13P35225 146 aa17.8■□□□□ 0.44
HDAC6-227ENST00000485102 CRKLP46109 303 aaKnown RBP17.8■□□□□ 0.44
HDAC6-227ENST00000485102 SULT6B1Q6IMI4 303 aa17.8■□□□□ 0.44
HDAC6-227ENST00000485102 PTCD1O75127 700 aaKnown RBP17.79■□□□□ 0.44
HDAC6-227ENST00000485102 TOMM70O94826 608 aa17.79■□□□□ 0.44
HDAC6-227ENST00000485102 USP42Q9H9J4 1324 aaKnown RBP17.78■□□□□ 0.44
HDAC6-227ENST00000485102 FCHSD2O94868 740 aa17.78■□□□□ 0.44
HDAC6-227ENST00000485102 ARHGAP27Q6ZUM4 889 aa17.78■□□□□ 0.44
HDAC6-227ENST00000485102 PIM2Q9P1W9 311 aa17.78■□□□□ 0.44
HDAC6-227ENST00000485102 KNSTRNQ9Y448 316 aa17.78■□□□□ 0.44
HDAC6-227ENST00000485102 ARFGEF1Q9Y6D6 1849 aa17.77■□□□□ 0.44
HDAC6-227ENST00000485102 SCN11AQ9UI33 1791 aa17.77■□□□□ 0.44
HDAC6-227ENST00000485102 AKAP4Q5JQC9 854 aa17.77■□□□□ 0.44
HDAC6-227ENST00000485102 INTS5Q6P9B9 1019 aaKnown RBP17.77■□□□□ 0.44
HDAC6-227ENST00000485102 PCGF6Q9BYE7 350 aa17.77■□□□□ 0.44
HDAC6-227ENST00000485102 TM4SF1P30408 202 aa17.76■□□□□ 0.43
HDAC6-227ENST00000485102 FKBP8Q14318 412 aa17.76■□□□□ 0.43
HDAC6-227ENST00000485102 AMER1Q5JTC6 1135 aaPredicted RBP17.76■□□□□ 0.43
HDAC6-227ENST00000485102 APLP1P51693 650 aa17.75■□□□□ 0.43
HDAC6-227ENST00000485102 TJP1Q07157 1748 aa17.75■□□□□ 0.43
HDAC6-227ENST00000485102 DDR1Q08345 913 aa17.74■□□□□ 0.43
HDAC6-227ENST00000485102 SLC52A2Q9HAB3 445 aa17.74■□□□□ 0.43
HDAC6-227ENST00000485102 SRP68Q9UHB9 627 aaKnown RBP17.74■□□□□ 0.43
HDAC6-227ENST00000485102 ADAMTS7Q9UKP4 1686 aa17.74■□□□□ 0.43
HDAC6-227ENST00000485102 POLRMTO00411 1230 aaKnown RBP17.73■□□□□ 0.43
HDAC6-227ENST00000485102 DALRD3Q5D0E6 543 aaKnown RBP17.73■□□□□ 0.43
HDAC6-227ENST00000485102 C9orf131Q5VYM1 1079 aa17.72■□□□□ 0.43
HDAC6-227ENST00000485102 DNAJC5GQ8N7S2 189 aa17.72■□□□□ 0.43
HDAC6-227ENST00000485102 SOS1Q07889 1333 aaPredicted RBP17.72■□□□□ 0.43
HDAC6-227ENST00000485102 MRC1P22897 1456 aa17.71■□□□□ 0.43
HDAC6-227ENST00000485102 CYP19A1P11511 503 aaPredicted RBP17.71■□□□□ 0.43
HDAC6-227ENST00000485102 DNAJC10Q8IXB1 793 aa17.71■□□□□ 0.43
HDAC6-227ENST00000485102 VSIG10Q8N0Z9 540 aa17.71■□□□□ 0.43
HDAC6-227ENST00000485102 RBM46Q8TBY0 533 aaKnown RBP17.71■□□□□ 0.43
HDAC6-227ENST00000485102 LGR6Q9HBX8 967 aa17.71■□□□□ 0.43
HDAC6-227ENST00000485102 NMRK2Q9NPI5 230 aa17.71■□□□□ 0.43
HDAC6-227ENST00000485102 RNMTO43148 476 aaKnown RBP17.7■□□□□ 0.42
HDAC6-227ENST00000485102 ZPR1O75312 459 aa17.7■□□□□ 0.42
HDAC6-227ENST00000485102 NARFQ9UHQ1 456 aa17.7■□□□□ 0.42
HDAC6-227ENST00000485102 PER1O15534 1290 aaPredicted RBP17.69■□□□□ 0.42
HDAC6-227ENST00000485102 SBF1O95248 1867 aa17.68■□□□□ 0.42
HDAC6-227ENST00000485102 USPL1Q5W0Q7 1092 aa17.68■□□□□ 0.42
HDAC6-227ENST00000485102 ZC3H4Q9UPT8 1303 aaKnown RBP17.68■□□□□ 0.42
HDAC6-227ENST00000485102 CHRNA5P30532 468 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms