RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 SMIM5Q71RC9 77 aa20.17■□□□□ 0.82
LIMS3-204ENST00000482065 AK7Q96M32 723 aa20.17■□□□□ 0.82
LIMS3-204ENST00000482065 DCAF8L1A6NGE4 600 aa20.16■□□□□ 0.82
LIMS3-204ENST00000482065 KLHL34Q8N239 644 aa20.16■□□□□ 0.82
LIMS3-204ENST00000482065 COL3A1P02461 1466 aaPredicted RBP20.16■□□□□ 0.82
LIMS3-204ENST00000482065 UBR3Q6ZT12 1888 aa20.16■□□□□ 0.82
LIMS3-204ENST00000482065 HMGB2P26583 209 aaKnown RBP20.15■□□□□ 0.82
LIMS3-204ENST00000482065 ATP6V1AP38606 617 aa20.15■□□□□ 0.82
LIMS3-204ENST00000482065 CABP4P57796 275 aa20.15■□□□□ 0.82
LIMS3-204ENST00000482065 MAP3K5Q99683 1374 aa20.14■□□□□ 0.81
LIMS3-204ENST00000482065 PHF14O94880 888 aa20.14■□□□□ 0.81
LIMS3-204ENST00000482065 FLAD1Q8NFF5 587 aa20.13■□□□□ 0.81
LIMS3-204ENST00000482065 SLC4A9Q96Q91 983 aa20.13■□□□□ 0.81
LIMS3-204ENST00000482065 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.12■□□□□ 0.81
LIMS3-204ENST00000482065 RBM42Q9BTD8 480 aaKnown RBP20.12■□□□□ 0.81
LIMS3-204ENST00000482065 SCN11AQ9UI33 1791 aa20.12■□□□□ 0.81
LIMS3-204ENST00000482065 AKAP4Q5JQC9 854 aa20.11■□□□□ 0.81
LIMS3-204ENST00000482065 NFATC2IPQ8NCF5 419 aa20.11■□□□□ 0.81
LIMS3-204ENST00000482065 UTRNP46939 3433 aa20.11■□□□□ 0.81
LIMS3-204ENST00000482065 GNPATO15228 680 aa20.1■□□□□ 0.81
LIMS3-204ENST00000482065 U2SURPO15042 1029 aaKnown RBP20.09■□□□□ 0.81
LIMS3-204ENST00000482065 YY1P25490 414 aa20.09■□□□□ 0.81
LIMS3-204ENST00000482065 SSFA2P28290 1259 aa20.09■□□□□ 0.81
LIMS3-204ENST00000482065 MTHFSDQ2M296 383 aaKnown RBP20.09■□□□□ 0.81
LIMS3-204ENST00000482065 LGR6Q9HBX8 967 aa20.09■□□□□ 0.81
LIMS3-204ENST00000482065 ZNF831Q5JPB2 1677 aa20.08■□□□□ 0.81
LIMS3-204ENST00000482065 NLGN2Q8NFZ4 835 aa20.08■□□□□ 0.81
LIMS3-204ENST00000482065 PTCD1O75127 700 aaKnown RBP20.07■□□□□ 0.8
LIMS3-204ENST00000482065 COL5A3P25940 1745 aaPredicted RBP20.07■□□□□ 0.8
LIMS3-204ENST00000482065 VIRMAQ69YN4 1812 aaKnown RBP20.06■□□□□ 0.8
LIMS3-204ENST00000482065 RNMTO43148 476 aaKnown RBP20.06■□□□□ 0.8
LIMS3-204ENST00000482065 SLC52A2Q9HAB3 445 aa20.05■□□□□ 0.8
LIMS3-204ENST00000482065 MRC1P22897 1456 aa20.05■□□□□ 0.8
LIMS3-204ENST00000482065 PPP2R1AP30153 589 aa20.04■□□□□ 0.8
LIMS3-204ENST00000482065 CNTNAP4Q9C0A0 1308 aa20.03■□□□□ 0.8
LIMS3-204ENST00000482065 MYH14Q7Z406 1995 aaKnown RBP20.03■□□□□ 0.8
LIMS3-204ENST00000482065 CFAP53Q96M91 514 aa20.03■□□□□ 0.8
LIMS3-204ENST00000482065 RTCBQ9Y3I0 505 aaKnown RBP20.03■□□□□ 0.8
LIMS3-204ENST00000482065 ADAMTS7Q9UKP4 1686 aa20.03■□□□□ 0.8
LIMS3-204ENST00000482065 GOLGB1Q14789 3259 aaKnown RBP20.03■□□□□ 0.8
LIMS3-204ENST00000482065 TJP1Q07157 1748 aa20.02■□□□□ 0.8
LIMS3-204ENST00000482065 GPR162Q16538 588 aa20.02■□□□□ 0.8
LIMS3-204ENST00000482065 RC3H1Q5TC82 1133 aaKnown RBP20.02■□□□□ 0.8
LIMS3-204ENST00000482065 SLC39A6Q13433 755 aa20.01■□□□□ 0.79
LIMS3-204ENST00000482065 PELP1Q8IZL8 1130 aaKnown RBP20.01■□□□□ 0.79
LIMS3-204ENST00000482065 TRAPPC3LQ5T215 181 aa20■□□□□ 0.79
LIMS3-204ENST00000482065 RPS6KA4O75676 772 aa19.99■□□□□ 0.79
LIMS3-204ENST00000482065 CRKLP46109 303 aaKnown RBP19.99■□□□□ 0.79
LIMS3-204ENST00000482065 ARHGEF1Q92888 912 aaKnown RBP19.99■□□□□ 0.79
LIMS3-204ENST00000482065 RSPH6AQ9H0K4 717 aa19.99■□□□□ 0.79
LIMS3-204ENST00000482065 CICQ96RK0 1608 aaPredicted RBP19.98■□□□□ 0.79
LIMS3-204ENST00000482065 PRKAR2BP31323 418 aa19.98■□□□□ 0.79
LIMS3-204ENST00000482065 GAS2L2Q8NHY3 880 aa19.98■□□□□ 0.79
LIMS3-204ENST00000482065 CD2APQ9Y5K6 639 aa19.98■□□□□ 0.79
LIMS3-204ENST00000482065 KCPQ6ZWJ8 1503 aa19.97■□□□□ 0.79
LIMS3-204ENST00000482065 C4AP0C0L4 1744 aa19.97■□□□□ 0.79
LIMS3-204ENST00000482065 ADRA2BP18089 450 aa19.97■□□□□ 0.79
LIMS3-204ENST00000482065 DNAJC10Q8IXB1 793 aa19.97■□□□□ 0.79
LIMS3-204ENST00000482065 PHACTR3Q96KR7 559 aa19.97■□□□□ 0.79
LIMS3-204ENST00000482065 NUDCQ9Y266 331 aa19.97■□□□□ 0.79
LIMS3-204ENST00000482065 CHD4Q14839 1912 aa19.96■□□□□ 0.79
LIMS3-204ENST00000482065 GNAT3A8MTJ3 354 aa19.96■□□□□ 0.79
LIMS3-204ENST00000482065 MMP10P09238 476 aa19.96■□□□□ 0.79
LIMS3-204ENST00000482065 U2AF1L5P0DN76 240 aaPredicted RBP19.96■□□□□ 0.79
LIMS3-204ENST00000482065 U2AF1Q01081 240 aaKnown RBP eCLIP19.96■□□□□ 0.79
LIMS3-204ENST00000482065 IL17REQ8NFR9 667 aa19.96■□□□□ 0.79
LIMS3-204ENST00000482065 YBX3P16989 372 aaKnown RBP eCLIP19.95■□□□□ 0.78
LIMS3-204ENST00000482065 RFC4P35249 363 aa19.95■□□□□ 0.78
LIMS3-204ENST00000482065 INTS5Q6P9B9 1019 aaKnown RBP19.94■□□□□ 0.78
LIMS3-204ENST00000482065 GYS1P13807 737 aa19.93■□□□□ 0.78
LIMS3-204ENST00000482065 UBR2Q8IWV8 1755 aa19.93■□□□□ 0.78
LIMS3-204ENST00000482065 TEFQ10587 303 aa19.92■□□□□ 0.78
LIMS3-204ENST00000482065 NLGN1Q8N2Q7 840 aa19.92■□□□□ 0.78
LIMS3-204ENST00000482065 CCDC87Q9NVE4 849 aa19.92■□□□□ 0.78
LIMS3-204ENST00000482065 SRP68Q9UHB9 627 aaKnown RBP19.92■□□□□ 0.78
LIMS3-204ENST00000482065 SIPA1L3O60292 1781 aaPredicted RBP19.92■□□□□ 0.78
LIMS3-204ENST00000482065 CYP19A1P11511 503 aaPredicted RBP19.91■□□□□ 0.78
LIMS3-204ENST00000482065 WWC3Q9ULE0 1092 aa19.91■□□□□ 0.78
LIMS3-204ENST00000482065 TTC5Q8N0Z6 440 aa19.9■□□□□ 0.78
LIMS3-204ENST00000482065 FCHSD2O94868 740 aa19.89■□□□□ 0.77
LIMS3-204ENST00000482065 SOS1Q07889 1333 aaPredicted RBP19.89■□□□□ 0.77
LIMS3-204ENST00000482065 CEMIPQ8WUJ3 1361 aa19.89■□□□□ 0.77
LIMS3-204ENST00000482065 USP42Q9H9J4 1324 aaKnown RBP19.89■□□□□ 0.77
LIMS3-204ENST00000482065 ZBTB1Q9Y2K1 713 aa19.89■□□□□ 0.77
LIMS3-204ENST00000482065 FKBP8Q14318 412 aa19.88■□□□□ 0.77
LIMS3-204ENST00000482065 ZNF790Q6PG37 636 aa19.88■□□□□ 0.77
LIMS3-204ENST00000482065 VSIG10Q8N0Z9 540 aa19.88■□□□□ 0.77
LIMS3-204ENST00000482065 ZNF784Q8NCA9 323 aaPredicted RBP19.88■□□□□ 0.77
LIMS3-204ENST00000482065 ZNF496Q96IT1 587 aaPredicted RBP19.88■□□□□ 0.77
LIMS3-204ENST00000482065 GRIN3BO60391 1043 aa19.87■□□□□ 0.77
LIMS3-204ENST00000482065 C10orf71Q711Q0 1435 aa19.86■□□□□ 0.77
LIMS3-204ENST00000482065 KIF13BQ9NQT8 1826 aa19.86■□□□□ 0.77
LIMS3-204ENST00000482065 KCNQ3O43525 872 aa19.86■□□□□ 0.77
LIMS3-204ENST00000482065 DDX10Q13206 875 aaKnown RBP19.86■□□□□ 0.77
LIMS3-204ENST00000482065 PARP3Q9Y6F1 533 aa19.86■□□□□ 0.77
LIMS3-204ENST00000482065 KIAA1551Q9HCM1 1747 aa19.85■□□□□ 0.77
LIMS3-204ENST00000482065 HEG1Q9ULI3 1381 aa19.85■□□□□ 0.77
LIMS3-204ENST00000482065 MCM10Q7L590 875 aa19.85■□□□□ 0.77
LIMS3-204ENST00000482065 PXDNLA1KZ92 1463 aa19.85■□□□□ 0.77
LIMS3-204ENST00000482065 COL15A1P39059 1388 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms