RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 NEURL4Q96JN8 1562 aa8.89□□□□□ -0.99
SF3B1-209ENST00000479532 CLSPNQ9HAW4 1339 aa8.88□□□□□ -0.99
SF3B1-209ENST00000479532 PLEKHG3A1L390 1219 aa8.88□□□□□ -0.99
SF3B1-209ENST00000479532 ANKLE2Q86XL3 938 aa8.88□□□□□ -0.99
SF3B1-209ENST00000479532 NPAS3Q8IXF0 933 aa8.88□□□□□ -0.99
SF3B1-209ENST00000479532 KCTD17Q8N5Z5 321 aa8.88□□□□□ -0.99
SF3B1-209ENST00000479532 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.88□□□□□ -0.99
SF3B1-209ENST00000479532 HPS1Q92902 700 aa8.88□□□□□ -0.99
SF3B1-209ENST00000479532 ADGRG1Q9Y653 693 aa8.88□□□□□ -0.99
SF3B1-209ENST00000479532 SLIT1O75093 1534 aa8.87□□□□□ -0.99
SF3B1-209ENST00000479532 PPP1R15AO75807 674 aaPredicted RBP8.87□□□□□ -0.99
SF3B1-209ENST00000479532 VEGFBP49765 207 aa8.87□□□□□ -0.99
SF3B1-209ENST00000479532 GIGYF2Q6Y7W6 1299 aaKnown RBP8.87□□□□□ -0.99
SF3B1-209ENST00000479532 MRGPRX2Q96LB1 330 aa8.87□□□□□ -0.99
SF3B1-209ENST00000479532 TMEM2Q9UHN6 1383 aa8.86□□□□□ -0.99
SF3B1-209ENST00000479532 RPGRIP1LQ68CZ1 1315 aa8.86□□□□□ -0.99
SF3B1-209ENST00000479532 SCAF11Q99590 1463 aaKnown RBP8.86□□□□□ -0.99
SF3B1-209ENST00000479532 HSPA2P54652 639 aa8.86□□□□□ -0.99
SF3B1-209ENST00000479532 REPIN1Q9BWE0 567 aaKnown RBP8.86□□□□□ -0.99
SF3B1-209ENST00000479532 RIMS2Q9UQ26 1411 aa8.86□□□□□ -0.99
SF3B1-209ENST00000479532 ARHGAP23Q9P227 1491 aa8.85□□□□□ -0.99
SF3B1-209ENST00000479532 FMNL1O95466 1100 aaPredicted RBP8.85□□□□□ -0.99
SF3B1-209ENST00000479532 NEUROD1Q13562 356 aa8.85□□□□□ -0.99
SF3B1-209ENST00000479532 RGL3Q3MIN7 710 aa8.85□□□□□ -0.99
SF3B1-209ENST00000479532 TXNDC2Q86VQ3 553 aa8.85□□□□□ -0.99
SF3B1-209ENST00000479532 PPLO60437 1756 aa8.85□□□□□ -0.99
SF3B1-209ENST00000479532 MS4A1P11836 297 aa8.84□□□□□ -0.99
SF3B1-209ENST00000479532 MDM2Q00987 491 aaPredicted RBP8.84□□□□□ -0.99
SF3B1-209ENST00000479532 FAM161AQ3B820 660 aa8.84□□□□□ -0.99
SF3B1-209ENST00000479532 SPATA31E1Q6ZUB1 1445 aa8.84□□□□□ -0.99
SF3B1-209ENST00000479532 PHOX2BQ99453 314 aa8.84□□□□□ -0.99
SF3B1-209ENST00000479532 IFT172Q9UG01 1749 aa8.84□□□□□ -0.99
SF3B1-209ENST00000479532 IQGAP1P46940 1657 aa8.84□□□□□ -0.99
SF3B1-209ENST00000479532 NEXMIFQ5QGS0 1516 aa8.84□□□□□ -0.99
SF3B1-209ENST00000479532 TONSLQ96HA7 1378 aa8.84□□□□□ -0.99
SF3B1-209ENST00000479532 ZFYVE9O95405 1425 aa8.83□□□□□ -1
SF3B1-209ENST00000479532 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.83□□□□□ -1
SF3B1-209ENST00000479532 CLCN1P35523 988 aa8.83□□□□□ -1
SF3B1-209ENST00000479532 FAM160A2Q8N612 972 aaPredicted RBP8.83□□□□□ -1
SF3B1-209ENST00000479532 STRCQ7RTU9 1775 aa8.83□□□□□ -1
SF3B1-209ENST00000479532 NPHP4O75161 1426 aaPredicted RBP8.82□□□□□ -1
SF3B1-209ENST00000479532 H3BM21 787 aa8.82□□□□□ -1
SF3B1-209ENST00000479532 SIN3AQ96ST3 1273 aa8.82□□□□□ -1
SF3B1-209ENST00000479532 GPCPD1Q9NPB8 672 aa8.82□□□□□ -1
SF3B1-209ENST00000479532 PLEKHG1Q9ULL1 1385 aa8.82□□□□□ -1
SF3B1-209ENST00000479532 MED14O60244 1454 aa8.82□□□□□ -1
SF3B1-209ENST00000479532 TRIM32Q13049 653 aa8.81□□□□□ -1
SF3B1-209ENST00000479532 METTL3Q86U44 580 aaKnown RBP8.81□□□□□ -1
SF3B1-209ENST00000479532 MYOM2P54296 1465 aa8.81□□□□□ -1
SF3B1-209ENST00000479532 DIP2AQ14689 1571 aa8.81□□□□□ -1
SF3B1-209ENST00000479532 OATP04181 439 aa8.8□□□□□ -1
SF3B1-209ENST00000479532 LTKP29376 864 aa8.8□□□□□ -1
SF3B1-209ENST00000479532 KCNMA1Q12791 1236 aa8.8□□□□□ -1
SF3B1-209ENST00000479532 MORN1Q5T089 497 aa8.8□□□□□ -1
SF3B1-209ENST00000479532 NUTM2DQ5VT03 806 aaPredicted RBP8.8□□□□□ -1
SF3B1-209ENST00000479532 DCAF11Q8TEB1 546 aa8.8□□□□□ -1
SF3B1-209ENST00000479532 NLRP7Q8WX94 980 aa8.8□□□□□ -1
SF3B1-209ENST00000479532 THAP11Q96EK4 314 aa8.8□□□□□ -1
SF3B1-209ENST00000479532 LAMC1P11047 1609 aa8.8□□□□□ -1
SF3B1-209ENST00000479532 ERBB4Q15303 1308 aa8.8□□□□□ -1
SF3B1-209ENST00000479532 SETBP1Q9Y6X0 1596 aa8.79□□□□□ -1
SF3B1-209ENST00000479532 TMEM151AQ8N4L1 468 aa8.79□□□□□ -1
SF3B1-209ENST00000479532 PRDM9Q9NQV7 894 aa8.79□□□□□ -1
SF3B1-209ENST00000479532 PXYLP1Q8TE99 480 aa8.78□□□□□ -1
SF3B1-209ENST00000479532 SSTR3P32745 418 aaPredicted RBP8.77□□□□□ -1.01
SF3B1-209ENST00000479532 ATP6V1AP38606 617 aa8.77□□□□□ -1.01
SF3B1-209ENST00000479532 RDH13Q8NBN7 331 aa8.77□□□□□ -1.01
SF3B1-209ENST00000479532 SLC27A5Q9Y2P5 690 aa8.77□□□□□ -1.01
SF3B1-209ENST00000479532 ZEB1P37275 1124 aaPredicted RBP8.76□□□□□ -1.01
SF3B1-209ENST00000479532 L3MBTL2Q969R5 705 aa8.76□□□□□ -1.01
SF3B1-209ENST00000479532 GOPCQ9HD26 462 aa8.76□□□□□ -1.01
SF3B1-209ENST00000479532 TBX22Q9Y458 520 aa8.76□□□□□ -1.01
SF3B1-209ENST00000479532 PIK3C2GO75747 1445 aa8.76□□□□□ -1.01
SF3B1-209ENST00000479532 KIAA1210Q9ULL0 1709 aa8.76□□□□□ -1.01
SF3B1-209ENST00000479532 ADGRF5Q8IZF2 1346 aa8.76□□□□□ -1.01
SF3B1-209ENST00000479532 NRXN1Q9ULB1 1477 aa8.76□□□□□ -1.01
SF3B1-209ENST00000479532 ALKQ9UM73 1620 aa8.76□□□□□ -1.01
SF3B1-209ENST00000479532 NRXN3Q9Y4C0 1643 aa8.76□□□□□ -1.01
SF3B1-209ENST00000479532 PIK3R4Q99570 1358 aa8.75□□□□□ -1.01
SF3B1-209ENST00000479532 GDF11O95390 407 aa8.75□□□□□ -1.01
SF3B1-209ENST00000479532 ALDH1A1P00352 501 aa8.75□□□□□ -1.01
SF3B1-209ENST00000479532 FUT2Q10981 343 aa8.75□□□□□ -1.01
SF3B1-209ENST00000479532 SLC26A8Q96RN1 970 aa8.75□□□□□ -1.01
SF3B1-209ENST00000479532 FAM217BQ9NTX9 383 aaPredicted RBP8.75□□□□□ -1.01
SF3B1-209ENST00000479532 ADAMTS13Q76LX8 1427 aa8.74□□□□□ -1.01
SF3B1-209ENST00000479532 PRAG1Q86YV5 1406 aa8.74□□□□□ -1.01
SF3B1-209ENST00000479532 BMP1P13497 986 aa8.74□□□□□ -1.01
SF3B1-209ENST00000479532 RC3H1Q5TC82 1133 aaKnown RBP8.74□□□□□ -1.01
SF3B1-209ENST00000479532 BRICD5Q6PL45 260 aa8.74□□□□□ -1.01
SF3B1-209ENST00000479532 SALL2Q9Y467 1007 aaPredicted RBP8.74□□□□□ -1.01
SF3B1-209ENST00000479532 CHD2O14647 1828 aaKnown RBP8.74□□□□□ -1.01
SF3B1-209ENST00000479532 SETD1AO15047 1707 aaKnown RBP8.74□□□□□ -1.01
SF3B1-209ENST00000479532 CAPN5O15484 640 aaPredicted RBP8.73□□□□□ -1.01
SF3B1-209ENST00000479532 PCMTD1Q96MG8 357 aaPredicted RBP8.73□□□□□ -1.01
SF3B1-209ENST00000479532 BEGAINQ9BUH8 593 aa8.73□□□□□ -1.01
SF3B1-209ENST00000479532 C14orf93Q9H972 538 aaKnown RBP8.73□□□□□ -1.01
SF3B1-209ENST00000479532 CPS1P31327 1500 aa8.73□□□□□ -1.01
SF3B1-209ENST00000479532 SH3D19Q5HYK7 790 aa8.72□□□□□ -1.01
SF3B1-209ENST00000479532 CFAP70Q5T0N1 1121 aa8.72□□□□□ -1.01
SF3B1-209ENST00000479532 NWD1Q149M9 1564 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms